Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq2351 298 6e-76 seq2333 206 3e-48 seq3532 167 3e-36 >seq2351 Length=10305 Score = 298 bits (330), Expect = 6e-76 Identities = 586/843 (70%), Gaps = 45/843 (5%) Strand=Plus/Plus Query 40948 TTCTCTTATGCTGGCGTTCAA-CAGTTGATCGGGAAATATCTGTTGCAGGATCGCACCAA 41006 |||||||| |||| || |||| |||||| |||||||||||| |||| | ||| || Sbjct 2394 TTCTCTTACGCTG-CGGTCAAGCAGTTGGAAGGGAAATATCTGGTGCAAAACCGCGTCAC 2452 Query 41007 CGGCGATATCTACGAAACACCACAGTAT--GCATTCA-TGCTGATTGCGATGTGTTTACA 41063 ||| || |||||||||| | |||| | | || | || || ||| || | | | Sbjct 2453 CGGTGACATCTACGAAAGCGCCCAGTTTCTGTATGTACTGGTGGCTGCC-TGCCTGTTCT 2511 Query 41064 CCAGGATGAACCGCGC--ACCCTGTCGGCGTTTAATCATGTGGTTGACTTCTATAACGCA 41121 || | | | |||||| | | ||| | || ||| | ||||||| |||| Sbjct 2512 CCGG--TTACCCGCGCGAAACGCGTCTGGATTACGTCAAACG-----CTTCTATGACGCG 2564 Query 41122 ATTTCGGATCGTAAAC-TGTCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTAC 41180 ||||| | | | || | ||||| || ||||| || ||| | || |||||||| || || Sbjct 2565 ATTTCT-ACCTTCAAGATTTCATTGCCAACGCCGATCATGTCCGGCGTGCGTACCCCAAC 2623 Query 41181 GCGTCAGTTC---TCCAGTTGTGTTGTAATCGAATCTGGTGATTCTCTGGGTTCTCTGAA 41237 ||||||||| ||| | |||||| || || | || || |||| ||| | || Sbjct 2624 CCGTCAGTTCAGCTCCTGC-GTGTTG--ATTGAGTGCGGCGACAGCCTGGATTCCATTAA 2680 Query 41238 CGCTGTTACGTCC---GCGATCGTGAAATATATCTCTCAACGTGCGGGTATCGGTGTCAA 41294 ||| || ||| || ||||||||||| | || || ||||| |||||||| | || Sbjct 2681 CGCC---ACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCGGTATCGGCATTAA 2737 Query 41295 CGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTCCATACAGG 41354 |||||| | ||||| || ||||| || || |||||||||||| ||||||| || Sbjct 2738 CGCCGGTCGTATTCGTGCGCTGGGTAGCCCGATTCGCGGTGGTGAAGCATTCCATACTGG 2797 Query 41355 CGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCTTGTTCCCAGGGTGGCGT 41414 | ||| || |||| ||||| | ||||| || || ||||| || || ||||| || || Sbjct 2798 CTGTATTCCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTGCTCACAGGGCGGTGT 2857 Query 41415 TCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGCT 41474 || || || || ||||| ||| ||| ||| | |||||||| ||||| |||| |||||| Sbjct 2858 GCGCGGCGGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGAAGTGGAAAGCCTGCT 2917 Query 41475 GGTTCTGAAAAATAACCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGACTATGGCGT 41534 ||| ||||| || ||||||||||| |||| ||||| | |||||||| || || ||||| Sbjct 2918 GGTGCTGAAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCACCTCGATTACGGCGT 2977 Query 41535 ACAGCTTAACGATTTGATGTATAAGCGTTTAATCAATAACGATTACATCACTCTGTTCAG 41594 ||| | ||| | |||||||| |||| | |||| | | ||||| |||||||| Sbjct 2978 GCAGTTGAACAAGCTGATGTATCAGCGCCTGGTCAAAGGACAAGAAATCACCCTGTTCAG 3037 Query 41595 CC---CTGACGTTGCGAATGATCGCCTCTATGACGCGTTCTATCAAGCGGATCAGACTGA 41651 || ||||||| | |||| |||||||| || | || || |||||| ||| Sbjct 3038 CCCCTCTGACGTACC------CGGCCTGTATGACGCATT-TTTC--GCCGATCAGGATGA 3088 Query 41652 GTTTGAAGAACTCTAT-ACCAGTCTGGAAAAAGAC-CCAGCGGTACGCAAGAAACGTATT 41709 ||| ||| | ||| | |||| | ||||||||| |||| | ||||||||| || Sbjct 3089 GTTCGAACGCTTATATCAGCAGTAT-GAAAAAGACGACAGC-ATCCGCAAGAAATCCATG 3146 Query 41710 AAAGCGGTAGATCTGTTCCAGTTGCTTGTTCAGGAACGCGCACAGACCGGACGCAAATAC 41769 |||||||| ||||||||| | || | | || |||||||| ||||| || | ||| Sbjct 3147 AAAGCGGTCGATCTGTTCTCGCTGATGATGCAAGAACGCGCCTCTACCGGCCGTATCTAC 3206 Query 41770 ATT 41772 ||| Sbjct 3207 ATT 3209 Score = 111 bits (122), Expect = 2e-19 Identities = 346/520 (67%), Gaps = 28/520 (5%) Strand=Plus/Plus Query 43933 GTCAACGCTCTGGAAGCGATCCGCTTCTACGTGTC-GTTTA-CCTTCACGTTCAACTTTG 43990 |||||||| |||||||| ||||| || || |||| |||| ||| | | ||| ||||| Sbjct 4940 GTCAACGCGCTGGAAGCCATCCGTTTTTA--TGTCAGTTTCGCCTGCTCATTCGCCTTTG 4997 Query 43991 CCGAACAAGGTAAGATGGAAGGTAACGCGAAGATCATGCGTCTGATTGCCCGTGATGAAG 44050 |||||| | |||||| || ||||| || || || ||||| ||||| ||||||| Sbjct 4998 CCGAACGCGAACTGATGGAGGGCAACGCCAAAATTATCAAACTGATCGCCCGCGATGAAG 5057 Query 44051 CACTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG--GCAAATGGGTAAAGACGA 44108 | || || | || ||||| | |||| | || |||| || || | ||||| Sbjct 5058 CGCTGCACCTGACCGGTACCC--AGCATATGCTGAATCTGATGCGTTCCGGCCAGGACGA 5115 Query 44109 CCCAGAAATGGCAGAAATCGCATTCCAGTATGAAGAGGAA-GCGAC--ACAGATTTTCCT 44165 || ||||||||| ||||||| || || ||||| || || | | || | || Sbjct 5116 TCCGGAAATGGCACAAATCGCCGAAGCGTGCCAACAGGAATGCTACGACCTGTTTGTGCT 5175 Query 44166 TGAAGTATACGAACAGGAAAAAGAATGGGCTGAACACCTGTTCTCTATCGGTGACGTAGA 44225 | | | | ||||| ||||| ||||| ||| |||||||| |||| | || Sbjct 5176 GGCTGCA---CAGCAGGAGAAAGAGTGGGCGGAATACCTGTTCCGCGACGGT----TCGA 5228 Query 44226 CGGCGTATCCCTGAA-AAGTACGATC---GCC--TATATCGAACACCTGACGGATCAGCG 44279 | | |||||| || || || ||| || | ||| || | || || || Sbjct 5229 TG--ATTGGCCTGAACAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCG 5286 Query 44280 TATGCGAGCGGTTGGCCTACAGTCTCCATT-TAAACCTTCACCGAACCCGTATCCGTGGA 44338 |||| |||||| || || | | || || |||| || | |||||| ||||||| Sbjct 5287 CATGCAAGCGGTAGGGCTGCCCTTGCCGTTCCAAACGCGCA-CTAACCCGATCCCGTGGA 5345 Query 44339 TGAATAAATGGTTGAAGTCAGACAACGTACAGGTAGCCCCGCAAGAGGTAGAAGTAAGTT 44398 | ||| ||| || || |||||||| ||||| || |||||||| || ||||| |||| Sbjct 5346 TTAATGCCTGGCTGGTCTCTGACAACGTGCAGGTTGCTCCGCAAGAAGTGGAAGTGAGTT 5405 Query 44399 CTTACCTGGTTGGCAACCTTAACACTGAGATCAGCGACGA 44438 |||| ||||| ||| | || | ||||||||| || ||| Sbjct 5406 CTTATCTGGTCGGCCAAATTGATTCTGAGATCAACGCCGA 5445 Score = 107 bits (118), Expect = 2e-18 Identities = 268/405 (66%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 42328 ATCAAAAAACATGGCTTGCGTAACTCAACACTTTCTGCTTTAATGCCTTGTGAAAGTAGC 42387 ||||||| ||| || | |||||||| || || ||||| || ||||| | |||| Sbjct 3783 ATCAAAACACACGGTCTACGTAACTCCACGCTCTCTGCGTTGATGCCGTCGGAAACCTCG 3842 Query 42388 TCACAGGTGAGTAACTCAACCAACGGGATCGAACCTCCACGCGGCCCTGTGAGTGTGAAA 42447 ||||| | ||| | |||||||| |||||||| |||||||| | | ||| | || Sbjct 3843 TCACAAATTTCCAACGCCACCAACGGTATCGAACCACCACGCGGTCACATCAGTATCAAG 3902 Query 42448 TCTTCTAAGGAAGGTTCATTCAATCAGGTAGTACCGAACCAGAATAATCAGATTGACTTC 42507 | || || || || || ||||| || ||| | | | | | || || | Sbjct 3903 GCGTCAAAAGACGGCATTTTGCGCCAGGTGGTGCCGGATTACGAAACCCTGAAGGATGCC 3962 Query 42508 TATGATTATCTCTGGACAATGGCAAAACGCGGAAATAAAGGTTATCTGGCTCACGTAGCG 42567 || || | || ||| |||| | || ||| | || || ||| | || | | Sbjct 3963 TACGAATTACTGTGGGAAATGCCGAAC------AATGACGGCTACCTGCAACTGGTTGGG 4016 Query 42568 GTTATGCAGAAGTTTGTTGATCAGGCTATCTCTGCAAACACCAACTATGATCCGGCTAAC 42627 | |||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| | Sbjct 4017 CTGATGCAGAAGTTTGTCGATCAGGCTATTTCTGCCAACACCAACTACGATCCGGCGCGC 4076 Query 42628 TTCCCAGATGGTAAAGTGAAATCTGAAATCATCCTTGA-AGATCTGCTGTATGCAAACTA 42686 ||||| || |||||| ||||| | ||| || |||| || | | Sbjct 4077 TTCCCGTCAGGAAAAGTG-CCGATGAAACAGTTGCTGACTGACTTGCTTACCGCCTATAA 4135 Query 42687 TTTCGGCATCAAAACGCTGTACTACCACAACACCCGCGACGGTGC 42731 ||||| | ||||||||||| || || |||||||| |||||||| Sbjct 4136 GTTCGGGTTGAAAACGCTGTATTATCAAAACACCCGTGACGGTGC 4180 >seq2333 Length=8475 Score = 206 bits (228), Expect = 3e-48 Identities = 771/1195 (65%), Gaps = 68/1195 (6%) Strand=Plus/Minus Query 154800 CAACGAGAACGCAAACAAAGACGCACGGGTATTCCCTACACAGCGTGATTTGCTGGCGGG 154859 |||||||||||| ||||||||| ||| ||||||| ||||| || ||||||| || Sbjct 5627 CAACGAGAACGCCAACAAAGACAGTAAAGTAATCCCTACCCAGCGCGACCTGCTGGCCGG 5568 Query 154860 TATTGTAGCGAAGCATTTCGCCCGTAATCATATCCTTCCGAAACATATCGTAGAAGCGCA 154919 ||| || || ||||| | |||| | |||||||| ||| | | || || || Sbjct 5567 TATCGTTGCCAAGCACTACGCCAAGCAACATATCCTGCCGCGCGACGTGGTGCTTGCTCA 5508 Query 154920 TGACTCCGGCGACATCCATTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTAA 154979 ||| ||| || || || || |||||||||||||| ||||||| ||| || Sbjct 5507 TGAACGCGGTGAAATTCACTACCACGATCTGGACTACTCCCCGTTCTTCCCGATGTTCAA 5448 Query 154980 CTGCTGTCTGGTTGACCTGAAAGGTATGCTTGA-GAACGGTTTCAAGATGGGTAACGCGG 155038 ||| ||| | ||||| |||| ||| |||| || || ||||||||||||||||||| Sbjct 5447 CTGTATGCTGATCGACCTTGAAGGCATG-TTGACCAAGGGGTTCAAGATGGGTAACGCGG 5389 Query 155039 ACATTGAACCGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCAC 155098 | ||||| || || ||||| ||| || || || | | ||| || |||| ||| | Sbjct 5388 AGATTGAGCCACCAAAATCCATCTCAACCGCGACAGCAGTGACGGCCCAAATCATCGCGC 5329 Query 155099 AGATTGCCTCTCACCAGTACGGCGGGACAACCTTT--GCGAACGTTGATAAAGTGCTGGC 155156 || | || ||| |||||||| || ||| || || | | ||| || | ||||| Sbjct 5328 AGGTGGCAAGCCACATCTACGGCGGCACCACCATTAACCGTA--TCGATGAAATTCTGGC 5271 Query 155157 TCCATACGTAGAAATGACATTCTTCAAACATCTGCGCGATGCTGAACATTA-TGGTATCG 155215 || | ||| | | || ||| ||| | | || || ||| || | ||| Sbjct 5270 ACCGTTCGT--CACCGCCAGCCTT-AAAAAGCACCGGGAAACTGCTGATGAGTGG----- 5219 Query 155216 AACACTATAACGAT---TATGTGTATGCAATCGAGAAGACCGAAAAAGATGTATTCGATG 155272 ||| | |||| | | |||||| | ||||||||||| | ||| | Sbjct 5218 --CACATTCCCGATGCGGACGCCTATGCACTGTCTCGTACCGAAAAAGAGTGCTACGACG 5161 Query 155273 CGTTCCAGTCCTATGAGTATGAAGTGAATACCCTGCATACTGCCAACGGGCAAACCCCGT 155332 | |||||||| || |||||||| ||||| ||||| || ||||| || || || |||| Sbjct 5160 CCTTCCAGTCGCTGGAATATGAAGTAAATACGCTGCACACCGCCAATGGTCAGACACCGT 5101 Query 155333 TTGTTACCATCACTTTCGGTACTGGTACAAGCGACTATGAA---CGCATGATCCAGAAAG 155389 |||| ||| | ||||||| || || | | ||| ||| |||| ||| || Sbjct 5100 TTGTCACCTTTGGTTTCGGTCTCGGCAC---CCGTTGGGAATCGCGCCTGATTCAGCAAT 5044 Query 155390 CGATTCTGAAAAATCGTATTCGCGGCCTGGGTAAAGAGGGTATCACTCCGGTATTCCCTA 155449 | || ||| || || ||| ||| ||||| ||| | ||| || |||| ||||| | Sbjct 5043 CCATCCTGCGCAACCGCATTGCCGGTCTGGGCAAAAACCGTAAAACCGCGGTGTTCCCCA 4984 Query 155450 AACTGGTTATGTTC---ATGGAAAAAGGAATCAACCTTGATCCAGAGGATCAGAACTATG 155506 |||||| ||||| || | || |||| | | | | |||| |||||||| Sbjct 4983 AACTGG---TGTTCGCTATCCGCGACGGTGTCAATCACAAGGCTGCCGATCCGAACTATG 4927 Query 155507 ACATCAAACAACTTGCCCTTGAATGTGCTTCGAAACGCATGTACCCAGATAT----CATT 155562 ||||||| ||||| || || || || || || || |||||||| ||||| ||| Sbjct 4926 ACATCAAGCAACTGGCACTGGATTGCGCCAGCAAGCGGATGTACCCGGATATTCTCAATT 4867 Query 155563 A-GTTCAGCTAATAACCGCGCTATTACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTG 155621 | | |||| | | | | |||| || | |||| | | |||||||| || Sbjct 4866 ACGATCAGGTGGTTAAGG-----TTACCGGCT----CGTT--TAAGACGCCTATGGGCTG 4818 Query 155622 TCGCAGTTTCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACGTAA 155681 |||||||||||| |||||| |||| || | || || | || | ||||| || || Sbjct 4817 CCGCAGTTTCCTTGGCGTGT---ATGAGGAAGAGGGCAAGCAGATCCACGATGGTCGCAA 4761 Query 155682 TAATCTGGGTGTGGTGACAATCAACCTCCCACGTATTGCGATCGAAGCCGAAGCACAGGA 155741 || || || || | | ||||||| || || || ||| | ||||| || ||| | Sbjct 4760 CAACCTCGGGGTAATCAGCCTCAACCTGCCGCGCATCGCGCTGGAAGC---AGAACATAA 4704 Query 155742 AGAAGAAGACGCACACGATGCATTT-TGGCGTATCCTTGATGAACGTCTGGATCTTTGTT 155800 ||||| || ||| ||| | | ||| | |||||| | || Sbjct 4703 CGAAGA-------------GCGTTTCTGGAACCTGTTGGATAATCGTCTGCAACTGGCGA 4657 Query 155801 ACGATGCTCTGATGACTCGTATCGAAAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGA 155860 | | || ||||||| || ||||| | | || |||||| |||| || || | Sbjct 4656 AAAAAGCGTTGATGACGCGCATCGAGCGTTTGGAAAACGTCAAAGCCCGTGTCGCTCCAA 4597 Query 155861 TCCTGTACACAGAAGGTGCGTTTGGTGTACGCCTGAAACCGGATGATGAAATTCTGGAAC 155920 ||||||| | ||||| || | |||||||||||||||| |||| || | || || Sbjct 4596 TCCTGTATATGGAAGGCGCCTGTGGTGTACGCCTGAAAGCGGACGACAACGTTGCTGAGA 4537 Query 155921 TGTTCAAAAATGGGCGTAGTTCTATCAGTCTGGGCTATATCGGGCTGCATGAAAC 155975 | |||||||| || || || ||| |||||||||| ||| | ||||| || Sbjct 4536 TCTTCAAAAACGGTCGGGCATCGATCTCATTGGGCTATATTGGGGTTCATGAGAC 4482 >seq3532 Length=11862 Score = 167 bits (184), Expect = 3e-36 Identities = 149/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 51304 GTGGAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCT 51363 |||||||| || |||||| | ||||| ||||| ||||||| ||||| ||||||||||| Sbjct 11335 GTGGAAGGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCG 11276 Query 51364 GTGAAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGT 51423 || || || || ||||||||||| ||||| || |||||||| || || |||||||||||| Sbjct 11275 GTAAAACACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGT 11216 Query 51424 TTCAATTCACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51483 ||||| ||| |||| || ||||| || || ||||| || | || || || || || || Sbjct 11215 TTCAACTCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGC 11156 Query 51484 CTATAAT 51490 || |||| Sbjct 11155 CTGTAAT 11149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565565546557440