Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_014595.1 Length=170605 Score E Sequences producing significant alignments: (Bits) Value seq2351 156 5e-33 seq3690 89.7 6e-13 >seq2351 Length=10305 Score = 156 bits (172), Expect = 5e-33 Identities = 293/425 (69%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 142924 CATCAGGTTATTCAGCTGGACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCC 142983 |||||| || |||| ||| || || || || | || | | |||||| |||| ||||| Sbjct 2996 CATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCC 2937 Query 142984 CTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 143043 |||||||||||| || || | |||| ||||||| |||||| | || ||| | Sbjct 2936 ACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAA 2877 Query 143044 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCCGTTTGGAAATG 143103 || || || ||||| || | || || ||||| || ||||| || || || |||||||| Sbjct 2876 CGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATG 2817 Query 143104 TTTCCAGAACGGAATAACACCAGTATGCTTAACTTCGCCCATACCGATTTTCG---AACC 143160 ||| |||| |||||| |||||||| |||| || |||| ||| ||| Sbjct 2816 TTTATAGAAAGGAATACAGCCAGTATGGAATGCTTCACC---ACCGCGAATCGGGCTACC 2760 Query 143161 TTCGGCACGAATCATGCCAACGTTGATACCGATACCTGCACGCTTACTGATA--TATTCG 143218 |||||||| || |||| || |||||||| ||||||| ||| | |||| Sbjct 2759 CAGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACGCT--GTGAAACGTATTTC 2702 Query 143219 ATGATTGAATTAGCAGTCTTATTAATTGACTTCAGGGAGTCAGCCGC-TTCGATAACCAC 143277 | ||| | | | | || ||||| || | |||| ||| ||||| || || | ||| Sbjct 2701 ACGATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTC-GCCGCACTCAATCAACAC 2643 Query 143278 GCAGGAACTGAACTGTCTGGTAGGTGTTCTGGCGCCGGCCATGATAGGCGTGGGCAACGA 143337 |||||| |||||||| | ||| || || | |||||| |||||| ||||| ||||| || Sbjct 2642 GCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAATGA 2583 Query 143338 AACCT 143342 || || Sbjct 2582 AATCT 2578 >seq3690 Length=4460 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 159502 CCAGTCGGTGCCCCAATTCCATGGCCAAGTGATTCAGTTCCTGACGGATTTGCTTTAATG 159561 || || |||||||| || | ||||| ||| |||| | || | ||| | ||| Sbjct 2306 CCTGTTGGTGCCCCTATCGCCTGGCCGTCGGATAATATTCCCGCAGGCTATGCCCTGATG 2365 Query 159562 GAAGGCCAGACTTTTGACACAGGTGCTTATCCTAAGCTCGCTATCGCATATCCTACCGGT 159621 | |||||||||||||| | | || || || ||||| ||||| | ||||| | || Sbjct 2366 CAGGGCCAGACTTTTGATAAAAGTAAATACCC-AAGCTGGCTATAGTTTATCCATCAGGG 2424 Query 159622 ACTATTCCTGATATGCGTGGACAAACTATCAAGGGTACACCTAGTGGACGGGCCGTGTTA 159681 | ||||||||||||||||| || || || || |||| |||| || ||||||| | | Sbjct 2425 ATCATTCCTGATATGCGTGGTCAGACCATAAAAGGTAAACCTGATGAACGGGCCATACTC 2484 Query 159682 AGCGCAGAAGCAGATGGTGTTAAGTCTCATAACCACTCCGCATCGG 159727 ||| |||||| | ||| || | || || | || || ||| ||| Sbjct 2485 AGCAGAGAAGCGGGTGGCATTCAATCCCACACACATTCAGCAACGG 2530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545780927923200