Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq2333 309 4e-79 seq2351 185 1e-41 seq3516 86.0 9e-12 >seq2333 Length=8475 Score = 309 bits (342), Expect = 4e-79 Identities = 1170/1801 (65%), Gaps = 61/1801 (3%) Strand=Plus/Plus Query 123222 TGTTTGACACGACGCTGGACTTCGTCCTGTTTGCCGACGTTAAATGCGCGAG-ATCCAGG 123280 || |||| || || | ||| || ||||| || ||| ||||||| | || | |||| || Sbjct 3855 TGCTTGATCCGGCGTTTGACCTCTTCCTGCTTCCCGGCGTTAAACGGACGTGCATCC-GG 3913 Query 123281 GTTACCCAAATACCCACAGACGCGACGAATAAC-GTTCATCTTACGGTCATCGTGATTGC 123339 | | |||| ||| ||||| || ||||| | || | | | | ||| |||||||||| Sbjct 3914 GCTGCCCAGATAGCCACATACCCGACGCGTCACAGATACGCGTGCGGAG-TCGTGATTGC 3972 Query 123340 CACACTTCGGACATTCGTATCCTTTAGAAGTAGCGGT-AAACTCACCGTTAAATCCACAT 123398 |||| ||||| || | | ||||| || || | |||||||||| | || ||||| Sbjct 3973 CACATTTCGGGCAGGTGAAGCCTTTGCTGGT-GCACTCAAACTCACCGGTGAAGCCACAC 4031 Query 123399 TCAAAACAAACATCAACTGGAGTGTTTGTTCCATAGTACGGAGTGTTCCGATAAGCATAA 123458 ||| | || |||| | || || || || || || || || | |||| ||| Sbjct 4032 TCATAGCACTCATCGATCGGCGTATTGGTGCCGTAATAGGGCACACGGCTATAACTGTAA 4091 Query 123459 TCCCAAACTGCTTCGAGTGCTTCCAGATTGTGTTTCATATTCGGATATTCACCGTATGAA 123518 ||||| || |||| || |||| || || |||| || |||||||| || ||||| || Sbjct 4092 TCCCAGACGTCTTCCAGCGCTTTAAGGTTATGTTGCAGGTTCGGATACTCGCCGTAGCAA 4151 Query 123519 ATGAAACCACCGGTACTAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATACGGA 123578 ||||| || ||| | ||||| | | || |||||| ||||| || | || ||| Sbjct 4152 ATGAAGCCTCCGTTTGCCAGCGGTGGGTAGGGCAGTTCAAAGTCGATTTTCTGGTAAGGA 4211 Query 123579 TTTGTGTTCATATCCACAGACAGATGGAAGCTGTTTGTGTAATAGTCTTTATCAAACAC- 123637 || ||| | ||||| || ||||||||||| ||||| || ||||||| ||| Sbjct 4212 TTCACCTTCTTCTCCACGTCCAAGTGGAAGCTGTTGGTGTAGTAACCTTTATCGGTCACG 4271 Query 123638 -CTTGTGCTCATACAGA-----GCGTGATCGATCTTAGCGAAACGATAACACAGACTTTC 123691 || || | || | || ||| ||||| ||||| | |||||| |||| Sbjct 4272 CCTGGTAC-CACGCCGAATTCAGCGGTGTCGATACGGCAAAAACGGTCACACAGGTTTTC 4330 Query 123692 AGATGGAGTGCCATACAGACT-AAACGCCAGTCCAGTTTCTGCTTTCCACGCATTAGCCA 123750 | || || | || || || |||| || || |||||| |||||||| || | | Sbjct 4331 ACTCGGCGTACTGTAAAGGCTGAAACCGTAG-CCGGTTTCTTCTTTCCACTGATCGGTCG 4389 Query 123751 TTTCTTTCATGCGAG--ACAATA-CGTCCAGCAAGA-ATGCTTGTTTCTCGGCGTTTTCC 123806 |||||| ||| | || || || || | | || ||| ||| || || Sbjct 4390 CGGCTTTCAGGCGTGCGACGATGGCGACCGCCTTTTCACGCA-GTTGCTCA---TTATCG 4445 Query 123807 ATAACGTGCGATTCATCGTTG---AAC------TTGATGATCTCAGATACTTCATGCAAT 123857 | ||||| | || | |||| ||| || ||| ||||| || | Sbjct 4446 AACACGTGTG--TC-TGGTTGCCAAACAGCGCGTTAATGGTCTCA---------TGAACC 4493 Query 123858 CCAATATAGCC-AATGCTAACAGATGCGCGACCATTTTCAAATGCTTTCATGAT-GTCAT 123915 ||||||||||| |||| | | ||||| ||||| |||| || | | ||| | || | Sbjct 4494 CCAATATAGCCCAATGAGATC-GATGCCCGACCGTTTTTGAA-GATCTCAGCAACGTTGT 4551 Query 123916 CATTTGGTTTCAGACGAACACCACAAGCACCTTCAACATAAAGAATCGGAGCAACGCTTG 123975 | | | |||||| || |||||||| || ||||| | ||| || || ||||| || | | Sbjct 4552 CGTCCGCTTTCAGGCGTACACCACAGGCGCCTTCCATATACAGGATTGGAGCGACACGGG 4611 Query 123976 CCTTGACACCACGCAGACGATCAACGCGAGTCAACAAAGCTTTCTTAACGATTTCCATAC 124035 | ||||| || ||| || | ||| |||| ||| ||||| || | | || || || Sbjct 4612 CTTTGACGTTTTCCAAACGCTCGATGCGCGTCATCAACGCTTTTTTCGCCAGTTGCAGAC 4671 Query 124036 GCTCTTCCAGAATTTCAAAGAAGCGCATTTGATTGCCGTTTGCGTCGAGTGCGATACGCG 124095 | | |||| | | |||| ||| || || | ||| || || ||||| |||| Sbjct 4672 GATTATCCAACAGGTTCCAGAAACGCTCTTCGTTATGTTCTGCTTCCAGCGCGATGCGCG 4731 Query 124096 GCAAGTTCAGAGTAACAACACCGAGATTGTTTCTGCCTTCATGAACTTCATTACCGGTTT 124155 ||| ||| || | | || ||||| ||||| | || || || | | || || || Sbjct 4732 GCAGGTTGAGGCTGATTACCCCGAGGTTGTTGCGACCATCGTGGATCTGCTTGCCCTCTT 4791 Query 124156 CGTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATAGGGAACTTAAAGCTACCAGTCA 124215 | || | | || | | |||||| ||||| |||||||| |||||| || || | Sbjct 4792 CCTCATACACGCCAAG---GAAACTGCGGCAGCCCATAGGCGTCTTAAACGAGCCGGTAA 4848 Query 124216 CTTCTACCACTTTATCATAACTCAAGATGTCTGGATACATACGCTTGGCAGCGCACTCCA 124275 | | ||||| | ||| ||| | | || || || ||||| |||||| ||||| |||| Sbjct 4849 CCTTAACCACCTGATCGTAATTGAGAATATCCGGGTACATCCGCTTGCTGGCGCAATCCA 4908 Query 124276 GTGCCATCTGTTTGATACGATACAGAGGATCAGTTGGTTTCAAGTTGTGTCCGTCTTTCA 124335 |||||| || ||||| ||| ||||| | | || ||| ||||| | Sbjct 4909 GTGCCAGTTGCTTGATGTCATAGTTCGGATCGGCAGCCTTGTGATTGACACCGTCGCGGA 4968 Query 124336 GCGCGAAAACAAGTTTCGGGAAAACGGGAGTAATACCTTCTTTGCCAAGACCTTTCATCC 124395 ||||| || ||||| ||||| || | || ||| | |||||| ||||| || | Sbjct 4969 TAGCGAACACCAGTTTGGGGAACACCGCGGTTTTACGGTTTTTGCCCAGACCGGCAATGC 5028 Query 124396 GAACTTTCAGAATTGCTTCCTGAATGAGTTCGGATTCCCAGCTAGTGCCTAGTCCAAACC 124455 | ||| || | || |||||| || |||||||| | ||||| || || || | Sbjct 5029 GGTTGCGCAGGATGGATTGCTGAATCAGGCGCGATTCCCAACGGGTGCCGAGACCGAAAC 5088 Query 124456 CGAAAGTGCAGAATGGAGTTTGACCATTTGCCGAGTGCAGAGTGTTTACCTCATACTCTA 124515 | || ||| || || || |||||||| || | |||||| || ||||| ||||| || | Sbjct 5089 CAAAGGTGACAAACGGTGTCTGACCATTGGCGGTGTGCAGCGTATTTACTTCATATTCCA 5148 Query 124516 GGCTTTGCATTGCATCATA-CACGGCTTTGCGAGTCTTTTCAATAGCGTATTGCCTTTG- 124573 | || | || || || ||| ||| || | || | || || || | | Sbjct 5149 GCGACTGGAAGGCGTCGTAGCACTCTTTTTCGGTACGAGACAGT-GCATAG-GCGTCCGC 5206 Query 124574 ATCTGGAATTTTCCAATAACGCGCTTCATCCAAATGCTTTTCATGTGTCATCTTAACATA 124633 ||| ||||| | ||| | | || ||| ||||||| | | | | || | Sbjct 5207 ATCGGGAATGTGCCACTCATCAGCAGTTTCCCGGTGCTTTTTAAGGCTGGCGGTGACGAA 5266 Query 124634 AGGTGCCAATGCTTCGTCAATGCGATTAATTGTGTTGCCACCATAAATGTGACTTGCAAC 124693 ||||||| ||| || || || ||||| ||| |||| || || ||||| ||||| || Sbjct 5267 CGGTGCCAGAATTTCATCGATACGGTTAATGGTGGTGCCGCCGTAGATGTGGCTTGCCAC 5326 Query 124694 CTGTGCAATGATTTGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCTTAGGAGTTTCGAT 124753 ||| || |||||||| || || || || | ||||| | |||| || || | || || Sbjct 5327 CTGCGCGATGATTTGGGCCGTCACTGCTGTCGCGGTTGAGATGGATTTTGGTGGCTCAAT 5386 Query 124754 CTGTGCATTACCCATGCGGAACCCAC-GCTCTAACATGCCGTTGAGATCAATCAACATGC 124812 || || |||||||| |||||| | || |||||||| | || || |||| ||| | Sbjct 5387 CTCCGCGTTACCCATCTTGAACCCCTTGGTC-AACATGCCTTCAAGGTCGATCAGCATAC 5445 Query 124813 AGTTAAACATTGGGAAGAACGGAGAGTAATCAAGATCATGGAAGTGAATAAAACCAGCTT 124872 |||| ||||| ||||||||||| ||||| || ||||| ||| ||||||| ||| || Sbjct 5446 AGTTGAACATCGGGAAGAACGGGGAGTAGTCCAGATCGTGGTAGTGAATTTCACCGCGTT 5505 Query 124873 CGTGTGCTTGCAGAACTTCGGTCGGCAG---ATAGTGCTTTGCAAAGTGCTTGCTTACTA 124929 | || || ||| || ||| |||||| || ||||| || |||||||| || | Sbjct 5506 CATGAGCAAGCACCACGTCGCGCGGCAGGATATGTTGCTTGGCGTAGTGCTTGGCAACGA 5565 Query 124930 TGCCCGCGACTAAATCGCGTTGTGTCGGAATAACTTTTGCATCTTTGTTTGCATTCTCAT 124989 | || || | | ||||| || || || || ||||| |||||||| || ||||| | Sbjct 5566 TACCGGCCAGCAGGTCGCGCTGGGTAGGGATTACTTTACTGTCTTTGTTGGCGTTCTCGT 5625 Query 124990 T 124990 | Sbjct 5626 T 5626 >seq2351 Length=10305 Score = 185 bits (204), Expect = 1e-41 Identities = 292/414 (71%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 129056 ACATCAGCTTATTGATTTGGATACCGTAGTCAAGATGTCGGATTCGGTTTTCTTCAACGC 129115 |||||||||| || | || | ||||| || || || || | ||||| |||| |||| Sbjct 2997 ACATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGC 2938 Query 129116 CCTTGTTATTCTTGAGCACAAGGATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATA 129175 | ||| ||||| ||||| || | |||| ||||| || ||||||| |||||| | | Sbjct 2937 CACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACA 2878 Query 129176 GAGTTGCGGCACCGCCGCGAACACCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGT 129235 ||||| || |||||||| ||||| |||||||| ||| || || || |||||||| | Sbjct 2877 ACGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAAT 2818 Query 129236 ATTTCCAAAATGGGATAATACCGGTATGTCGCACTTCACCGCTACGAATGCGAGATCCCT 129295 ||| | || || ||| || ||||| ||||||| | ||||| || | | || Sbjct 2817 GTTTATAGAAAGGAATACAGCCAGTATGGAATGCTTCACCACCGCGAAT-CGGGCTACCC 2759 Query 129296 CG-GCACGAATCGCACCGCCGTTGATGCCGATACCAGCGCGTTTGCTGATA--TAGTCAA 129352 | |||||||| |||| |||| ||||||||||| || || | ||| | || | | Sbjct 2758 AGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACGCT--GTGAAACGTATTTCA 2701 Query 129353 CGATAGAACTAGCGGTAGCGTTGATGCTATCCAGTTCGTCTCCACATTCGATCTTGACAC 129412 |||||| ||| | ||| ||||| ||| |||||| ||| || || || ||| || | Sbjct 2700 CGATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGC 2641 Query 129413 AAGAGCTAAACTGCCGAGTCGGGGTGCGAACACCTGCGAGAATCGGAGTTGGCA 129466 | ||||| ||||| || || ||||| || || || | | ||||| ||||||| Sbjct 2640 AGGAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCA 2587 Score = 120 bits (132), Expect = 4e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 127052 ATACTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAATCAGTTTCATGATCTTAGC 127111 || |||||| || | ||||||| |||||| || || |||||||| || || || || Sbjct 5083 ATGCTGGGTACCGGTCAGGTGCAGCGCTTCATCGCGGGCGATCAGTTTGATAATTTTGGC 5024 Query 127112 GTTGCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGCAGGCGAAGCTTACATAAAA 127171 |||||| ||||||| ||||||||||||| | ||| | ||||||||| || |||||||| Sbjct 5023 GTTGCCCTCCATCAGTTCGCGTTCGGCAAAGGCGAATGAGCAGGCGAAACTGACATAAAA 4964 Query 127172 ACGAATCGCTTCCAAAGCGTTTAC 127195 ||| || ||||||| ||||| || Sbjct 4963 ACGGATGGCTTCCAGCGCGTTGAC 4940 >seq3516 Length=17139 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 191317 TGGCGGGGGTAGCTGGACTCGAACCAGCGAATGACGGAATCAAAATCCGTTGCCTTTCCA 191376 |||| |||||| ||||| ||||||||| ||||| ||| ||||||| ||| |||||| || Sbjct 7692 TGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCG 7633 Query 191377 ACTTGGCGATACCCCTATA 191395 |||||||||||||| ||| Sbjct 7632 -CTTGGCGATACCCCAATA 7615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720693851811840