Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq10 134 5e-26 seq162 104 9e-17 seq14 102 3e-16 seq3563 93.3 2e-13 >seq10 Length=2352850 Score = 134 bits (148), Expect = 5e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| ||| ||||||| ||||| || || || || || ||| |||| Sbjct 819890 AATGCAGATTTTTGTTAAGACATTGACTGGCAAAACCATCACCCTGGAAGTCGAAGCATC 819949 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | ||||| |||||||||||||| ||||| || || || ||||| Sbjct 819950 TGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCAGATCA 820009 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||||| || ||| | || |||||| | || || ||||||||| | | || || || Sbjct 820010 ACAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGACGGAAGAACTCTTTCAGACTACAA 820069 Query 391229 TATTGATAAGGA 391240 ||| | || || Sbjct 820070 CATTCAAAAAGA 820081 Score = 104 bits (114), Expect = 9e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || ||||| ||||| ||||||| || || ||||| | || ||||| | Sbjct 818748 ATTATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACCATTACGTTGGAGGTTGAGGCT 818807 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 ||||| | |||||| | | ||| || || || || || || ||||| ||||| || Sbjct 818808 TCTGACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGAC 818867 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 || |||||| | || ||| | || || || || || ||||| ||||| | | |||||| Sbjct 818868 CAGCAACGTCTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTAT 818927 Query 391227 AATATTGATAAGGATGCAACACTTCAC 391253 |||||| | || || | || |||||| Sbjct 818928 AATATTCAGAAAGAGTCCACCCTTCAC 818954 Score = 100 bits (110), Expect = 1e-15 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || |||||||| || || || || || || || || | || Sbjct 820574 AATGCAGATTTTTGTCAAGACTCTGACTGGCAAGACCATCACACTCGAAGTAGAGGCCTC 820633 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | || || || || ||||| || ||||||||||| || || Sbjct 820634 TGACACAATTGAAAACGTCAAGGCGAAGATCCAGGATAAAGAGGGAATTCCTCCAGACCA 820693 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||| | || ||| | || |||||| | |||||||| || ||| | | || || || Sbjct 820694 ACAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTCTCAGACTACAA 820753 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 820754 CATCCAGAAGGAATCCACTCTGCACTTGGT 820783 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || || || || || || | ||| Sbjct 818979 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCT 819038 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| || || || || || || ||||| ||||| || || Sbjct 819039 GACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 819098 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || ||| | || || || || || ||||| ||||| | | ||||||||| Sbjct 819099 CAACGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTATAAT 819158 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | || || | || |||||| Sbjct 819159 ATTCAGAAAGAGTCCACCCTTCAC 819182 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || || || || || || | ||| Sbjct 819207 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCT 819266 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| || || || || || || ||||| ||||| || || Sbjct 819267 GACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 819326 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || ||| | || || || || || ||||| ||||| | | ||||||||| Sbjct 819327 CAACGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTATAAT 819386 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | || || | || |||||| Sbjct 819387 ATTCAGAAAGAGTCCACCCTTCAC 819410 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || || || || || || | ||| Sbjct 819435 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCT 819494 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| || || || || || || ||||| ||||| || || Sbjct 819495 GACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 819554 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || ||| | || || || || || ||||| ||||| | | ||||||||| Sbjct 819555 CAACGTCTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTATAAT 819614 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | || || | || |||||| Sbjct 819615 ATTCAGAAAGAGTCCACCCTTCAC 819638 >seq162 Length=620880 Score = 104 bits (114), Expect = 9e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||| ||||| || || ||| | | | ||||| | ||||||| | ||| Sbjct 49778 AAAATGAGGGAAACCGCCGAGGGCTATTTGAATACGCCAGTGAAGAATGCAGTTGTCACT 49837 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || || |||||||| ||| | || ||||||||||||||||||| || || |||||| Sbjct 49838 GTCCCAGCGTATTTCAACGATTCTCAGAGGCAAGCAACTAAAGATGCTGGTCAAATTGCT 49897 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||| | || || || ||| | || || ||||| || || || || || || |||||| Sbjct 49898 GGTCTCAACGTCCTCCGAGTCATCAACGAACCGACGGCTGCCGCACTTGCCTATGGA 49954 >seq14 Length=2234412 Score = 102 bits (112), Expect = 3e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || ||||| || || || || || || || || | ||| Sbjct 1933398 ATGCAGATCTTCGTAAAAACCCTAACTGGGAAGACCATCACCCTCGAGGTGGAGGCTTCT 1933457 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | ||| |||||||| || ||||| || ||||| || || || Sbjct 1933458 GACACAATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 1933517 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | |||||| | || ||||| || || |||||| | || || | ||||| || Sbjct 1933518 CAGAGGCTGATTTTCGCTGGTAAACAGCTCGAGGATGGACGCACCCTGTCTGATTACAAC 1933577 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGA 391265 ||| | ||||| | ||||||||||| ||| | ||| Sbjct 1933578 ATTCAGAAGGAATCGACACTTCACTTGGTACTCAGA 1933613 >seq3563 Length=5470 Score = 93.3 bits (102), Expect = 2e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 |||||||| |||| |||||| | || | ||| | || ||||| || || || || Sbjct 3917 AAAATGAAGAAAACGGCAGAAGACTACCTCGGTGAAACTGTCACTGAAGCGGTTATCACC 3858 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || || ||||| || ||||| ||||| || ||||| ||||||||||| | || || Sbjct 3857 GTGCCGGCGTATTTTAACGATGCGCAACGTCAGGCAACCAAAGATGCAGGCCGCATCGCA 3798 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||| | | || || || || |||||||| ||||| ||||| || || || || || Sbjct 3797 GGTCTGGAAGTAAAACGTATCATCAATGAACCGACAGCGGCTGCGCTGGCGTACGGTCT 3739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975617954476544