Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq2351 163 3e-35 seq3532 152 5e-32 seq3176 138 1e-27 >seq2351 Length=10305 Score = 163 bits (180), Expect = 3e-35 Identities = 314/461 (68%), Gaps = 4/461 (1%) Strand=Plus/Minus Query 137852 GAACAGAGTGATGTAGTCGTCTTTAATCAGACGTTCAAACATCAGGTCGTTGATTTGAAC 137911 |||||| ||||| | | |||| | ||| || | | ||||||| | ||| | || || Sbjct 3035 GAACAGGGTGATTTCTTGTCCTTTGACCAGGCGCTGATACATCAGCTTGTTCAACTGCAC 2976 Query 137912 ACCATAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGTACGAG 137971 || ||||| | |||||| | ||||| | || ||||| ||||||||| || || || Sbjct 2975 GCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAG 2916 Query 137972 GAGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACAATGTCGCCGCGCCACCACGGAC 138031 ||| | || ||||| || ||||| | || || |||| || ||||| || || || || Sbjct 2915 CAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCTCCGCCGCGCAC 2856 Query 138032 TCCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAATAACTCC 138091 ||||| || || || || || ||||| || |||| ||||| ||||||||||| || Sbjct 2855 ACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTTATAGAAAGGAATACAGCC 2796 Query 138092 AGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCATACCTGCGTT 138151 |||||| |||| || || || ||| |||||||| ||| ||||| Sbjct 2795 AGTATGGAATGCTTCACCACCGCGAATCGGGCTACCCAGCGCACGAATACGACCGGCGTT 2736 Query 138152 AATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTG--ATTCAGCTGATTTGTTA 138209 |||||||||||| ||||| | || | ||| | || || | | || || |||| Sbjct 2735 AATGCCGATACCGGCACGCTGTGAAACGTATTTCACGATAGCACTGGAGGTG--GCGTTA 2678 Query 138210 ATTGACTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACGAGTAGGA 138269 || || | ||| || || ||||| | ||||| || ||||| ||||| || || Sbjct 2677 ATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACTGACGGGTTGGG 2618 Query 138270 GTACGAGCACCTGCCATGATTGGAGTTGGCAGAGAAATTTT 138310 ||||| | || | |||||| || ||||||| ||||| || Sbjct 2617 GTACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCTT 2577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 136150 GCTCGTTTCATAATTGCTTCATCGAGAACAATCTCATCAAACACCTTTGCCGGGTCATTC 136209 || ||||||| ||| |||||| | ||| || ||||| |||||| |||||| || || Sbjct 4791 GCACGTTTCAGAATCTCTTCATTGGTAACGATATCATCGAACACCAGTGCCGGATCGTTG 4732 Query 136210 AGCAGGTTACGCATGATGTGAGTATATGAACGAGAGTGAATCGTTTCAGAGAACGTCCAG 136269 | | || || ||||| || ||||| ||||| || || || ||||| || || | |||| Sbjct 4731 ACAATATTGCGGATGATATGGGTATAGGAACGGGAATGGATGGTTTCTGAAAATGCCCAG 4672 Query 136270 GTCTGGTTCCATGTATCGAGTGATGGGTCAGAAATCAGAGCAGAAAGAACAGCA-GCTGG 136328 || | |||| || || | |||| || ||||| | | || || | | | | Sbjct 4671 GTTTCTATCCAGGTTTCCAACTCTGGGATGGAGATCAGCG--GTAACAATGCGACGTTCG 4614 Query 136329 AGCT-CGGCCTTGGATTGAATCCAGAAGGCTTTGATATTTCAGATT 136373 ||| || ||||| || || ||||| || |||| ||||||||||| Sbjct 4613 GGCTGCGTCCTTGAATGGAGTCCAGCAGTGTTTGGTATTTCAGATT 4568 >seq3532 Length=11862 Score = 152 bits (168), Expect = 5e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 62002 GTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACA 62061 ||||||||||| | ||| |||||||| |||||||||| |||| || || || || || Sbjct 11163 GTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACGCACT 11222 Query 62062 GCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCT 62121 ||||||||||||||||| || |||| ||| || |||||||| || |||| || |||||| Sbjct 11223 GCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGCATCT 11282 Query 62122 TCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACCTTCAACTTTAACT 62181 || | ||||| |||||| ||||||||||| ||||| || ||||| || ||| Sbjct 11283 TCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTCCACGCGCACT 11342 Query 62182 ACAGGTTGACTTTCAATTCCAACTTCTCGAGATTCAA 62218 | |||| |||| | |||||| ||| |||||| Sbjct 11343 TCCGGTTTGATTTCCAACGGAACTTCACGATATTCAA 11379 >seq3176 Length=18404 Score = 138 bits (152), Expect = 1e-27 Identities = 145/189 (77%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 61985 GACATTACATTTCCTTGGTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCA 62044 || |||||||| || ||||||||||| | ||||||||| ||||||||||| |||| Sbjct 6311 GAAATTACATTGACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCA 6370 Query 62045 GAGAATTAAATCGGACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTG 62104 | || || || || || ||||||||||||||||| || |||| ||| ||||||||||| | Sbjct 6371 GCGAGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCG 6430 Query 62105 GATGTTGAACTGCATCTTCTAAAG--TTTCTTTAGTCAGAACATTCACGTTCAGATGTTG 62162 | |||| | ||||| | | || |||| ||| || ||||||||||| ||||| Sbjct 6431 GGTGTTCCATGGCATC--CAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTG 6488 Query 62163 GCCACCTTC 62171 |||||||| Sbjct 6489 ACCACCTTC 6497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529573731840000