Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq14 174 2e-38 seq320 113 5e-20 seq30 82.4 9e-11 >seq14 Length=2234412 Score = 174 bits (192), Expect = 2e-38 Identities = 733/1144 (64%), Gaps = 30/1144 (3%) Strand=Plus/Minus Query 109411 AGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGT 109470 ||||| ||||| || || || | ||||| | ||| || | | |||||| || | ||| Sbjct 232948 AGATAGTACATCCCAGTCTTCAATCCAGCTTCCCAACCGAAGAAATGCATGGACGTGAGC 232889 Query 109471 TTGGAAAGTGTCGGACTCTCCATA--AACAAGTTCATCGACTGAGACTGATCGATGAATC 109528 || | | || ||||| |||| |||| || ||||||| ||||||||||| || Sbjct 232888 TTCTCAGGGGTTGGACTGGCCATGTGAACA--TTGGTCGACTGGGACTGATCGATAAAAG 232831 Query 109529 GACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGT 109588 || |||||||| ||||| | | ||| | | ||| ||| |||||||| || ||| Sbjct 232830 CCCCTCGATCAGCAGCCATTTTCAGGATCATCCTCTGGGGAATCTCCCAGACTGTTCTGT 232771 Query 109589 ACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCA 109648 ||| |||||| || | || || | | |||| | || || || ||| | | Sbjct 232770 ACAGTGCCTTGATGTCTGCTGGTATTTTCTCGATACTCTGGATCGACCCATTGTTCGCTA 232711 Query 109649 CCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGAT 109708 || |||| |||||| || | ||||||| || | |||| || | | |||| Sbjct 232710 TTATCAGATTCTTCATGTCGTCGTCCCAGAGATCGCGTTCAGTGAGGTCCTTCAGGAGAT 232651 Query 109709 GCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGT 109768 | ||||| || |||||||||| || ||| | | ||||||||| | |||| Sbjct 232650 GGGGATTGACGACCTGGAATTCACCAGACAGCACGCGCCTGGAGTAGATGTTGCTGGTGT 232591 Query 109769 AGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAG 109828 |||| |||| ||| ||||| || ||||| || || || || ||||| ||||| || | Sbjct 232590 AGGGCTCGATGGCCTCGTTGTTACCCAGGATCTGGGCTGTTGATGCTGTTGGCATTGGTG 232531 Query 109829 CCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGT----CC 109884 ||| || ||| ||| | || ||| ||| || | | | | ||| || || Sbjct 232530 CCAGTAGCAGAGAGTTCCTGA--CCC--CGTGTTGAGATATTTTCTCCTTGAGTTTAGCC 232475 Query 109885 CAATCATAACGACCACTAAATTTA---GTCTCACCATCCCACATATCTGGTTGAAGTACA 109941 || || ||| | ||| || | || | ||||||| || || || | Sbjct 232474 CAGTC-------CCAG-AGGTTTGTCGGTGTGAC-ACCCCACATGTCGTACTGGAGGATG 232424 Query 109942 CCCTCAGCAG-CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTC 110000 |||| || | | || || || ||| | ||||||| | |||| | | ||| | || Sbjct 232423 CCCTG-GCTGACTGGCGAGCCTTTGTACGTCTCGTAAGTACCCTTCTCTTGGGCGAGTTC 232365 Query 110001 GGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCG 110060 | || ||||| || || ||| || | ||||| || || || || | | Sbjct 232364 ACAGGATGCCTCCAGGGCACCATAGTAGAGGGTCTCGAAGATCTGGATGTTGAGTTTCTG 232305 Query 110061 AGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAAC 110120 | ||| |||| |||||| ||| || || | || |||| || ||||||||||| Sbjct 232304 GGCCTCATCACTGTCGAATGGATAACGCATCAGTAGGAATGCATCTGCCAGACCCTGAAC 232245 Query 110121 ACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAA 110180 || | || ||||| || || ||||||| ||| || || || || || || | Sbjct 232244 TCCAATTCCCATGGGACGGTGTCTCATGTTGGAGACTCTTGCCTCCTCAACTGGATAGTA 232185 Query 110181 GTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTT 110240 ||| ||||||||||| | |||||| | || ||| || || | | |||||| Sbjct 232184 ATTGACGTCGATGACCCTGTCGAGATTTCTGGTGACAACTTTGACGACTGTCTTGAGTTT 232125 Query 110241 GTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAG 110300 |||| | || | || ||| || | || ||| | || || || || || || | Sbjct 232124 GTCGAAGTCATAGGTCTTCTTCACTGGATCCACAAACATGTTGACTGCTATCGATGCCAA 232065 Query 110301 ATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGA 110360 |||||| |||| | || || | | ||| || | || || || ||||||||| Sbjct 232064 ATTGCAGACAGCAACTTCATCGGGGCTCGAGTACTCAACGATCTCGGTGCACAAGTTGCT 232005 Query 110361 ACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAG 110420 | || || || | |||||||||||| ||||| |||||| |||||||| || || Sbjct 232004 GCATTTTATTGTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCAGGCATCCTTGTACAG 231945 Query 110421 CATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGC 110480 |||||| || || ||||| || |||||| | ||||| || |||| | || ||| Sbjct 231944 CATGTAGGGAGTTCCAGTCTCAACTTGTGACATTAGAATTGCTGTCCACAGCTCACGGGC 231885 Query 110481 GGGGACAGTTG-CGTTAGCGA-GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAAT 110538 || || ||| || | | | || | |||||||||||||| ||||||| | || ||| Sbjct 231884 TGG--CACTTGACGCTTGTAACGAGCCTCCTCCTCGTACTTTGTGTACAGCTTATCGAAT 231827 Query 110539 TCCT 110542 |||| Sbjct 231826 TCCT 231823 Score = 156 bits (172), Expect = 5e-33 Identities = 731/1145 (64%), Gaps = 32/1145 (3%) Strand=Plus/Minus Query 109411 AGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGT 109470 ||||| ||||| || || || | ||||| | ||| || | | |||||| || | |||| Sbjct 776501 AGATAGTACATTCCAGTCTTCAATCCAGCTTCCCAACCGAAGAAATGCATGGACGTGAGT 776442 Query 109471 TTGGAAAGTGTCGGACTCTCCATA--AACAAGTTCATCGACTGAGACTGATCGATGAATC 109528 || | || ||| | |||| |||| || | ||||| |||||||||| || Sbjct 776441 TTCTCAGTGGTTGGATTGGCCATGTGAACA--TTGAGTGACTGTGACTGATCGACAAAAG 776384 Query 109529 GACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGT 109588 || |||||||| ||||| | || ||| | | ||| ||| |||||||| || ||| Sbjct 776383 CCCCGCGATCAGCAGCCATTTTGAGGATCATCCTCTGGGGAATCTCCCAGACTGTTCTGT 776324 Query 109589 ACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCA 109648 | | ||||| || | || || ||| | || | ||||| || ||| | | | Sbjct 776323 AGAGTGCCTTGAGGTCTGCTGGTATTTCCTCAATACTCTGAATTGACCCATTATTCGCTA 776264 Query 109649 CCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCG-TCAACAAGA 109707 || |||| |||||| | | ||||||| | | |||| || ||| || || Sbjct 776263 TTATCAGATTCTTCATGTGATCGTCCCAGAGATTGCGATCAGTGAGGTCCCTCAGCA-GA 776205 Query 109708 TGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTG 109767 || ||||| || ||||||||||| || || | | ||||||||| | ||| Sbjct 776204 TGGGGATTGACGACCTGAAATTCACCAGACAGCACACGCCTGGAGTAGATGTTGCTGGTG 776145 Query 109768 TAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGA 109827 ||||| |||| ||| ||||| || ||||| || || || || ||||| ||||| || Sbjct 776144 TAGGGCTCGATGGCCTCGTTGTTACCCAGGATCTGGGCTGTTGATGCTGTTGGCATTGGT 776085 Query 109828 GCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGT----C 109883 |||| || ||| ||| | || ||| ||| || | | | | ||| || | Sbjct 776084 GCCAGTAGCAGAGAGTTCCTGA--CCC--CGTGTTGAGATATTTTCTCCTTGAGTTTAGC 776029 Query 109884 CCAATCATAACGACCACTAAATTTA---GTCTCACCATCCCACATATCTGGTTGAAGTAC 109940 ||| || ||| | ||| || | || | ||||||| || || || | Sbjct 776028 CCAGTC-------CCAG-AGGTTTGTCGGTGTGAC-ACCCCACATGTCGTACTGGAGGAT 775978 Query 109941 ACCCTCAGCAG-CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 |||| || | | || || || ||| | ||||||| | |||| | | ||| | | Sbjct 775977 GCCCTG-GCTGACTGGCGAGCCTTTGTACGTCTCGTAAGTACCCTTCTCTTGGGCGAGTT 775919 Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGC 110059 | | || ||||| || || ||| || | ||||| || || || || | Sbjct 775918 CACAGGATGCCTCCAGGGCACCATAGTAGAGGGTCTCGAAGATCTGGATGTTGAGTTTCT 775859 Query 110060 GAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAA 110119 | | ||| |||| |||||| ||| || || | || |||| || |||||||||| Sbjct 775858 GGGCCTCATCACTGTCGAATGGATAACGCATCAGTAGGAATGCATCTGCCAGACCCTGAA 775799 Query 110120 CACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAA 110179 | || | || ||||| || || ||||||| ||| || || || || || || Sbjct 775798 CTCCAATTCCCATGGGACGGTGTCTCATGTTGGAGACTCTTGCCTCCTCAACTGGATAGT 775739 Query 110180 AGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTT 110239 | ||| ||||||||||| | |||||| | || ||| || || | | ||||| Sbjct 775738 AATTGACGTCGATGACCCTGTCGAGATTTCTGGTGACAACTTTGACGACTGTCTTGAGTT 775679 Query 110240 TGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAA 110299 ||||| | || | || ||| || | || ||| | || || || || || || | Sbjct 775678 TGTCGAAGTCATAGGTCTTCTTCACTGGATCCACAAACATGTTGACTGCTATCGATGCCA 775619 Query 110300 GATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGG 110359 |||||| |||| | || || | | ||| || | || || || ||||||||| Sbjct 775618 AATTGCAGACAGCAACTTCATCGGGGCTCGAGTACTCAACGATCTCGGTGCACAAGTTGC 775559 Query 110360 AACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGA 110419 | || || || | |||||||||||| ||||| |||||| |||||||| || | Sbjct 775558 TGCATTTTATTGTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCAGGCATCCTTGTACA 775499 Query 110420 GCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGG 110479 ||||||| || || ||||| || |||||| | ||||| || |||| | || || Sbjct 775498 GCATGTAGGGAGTTCCAGTCTCAACTTGTGACATTAGAATTGCTGTCCACAGCTCCCGGG 775439 Query 110480 CGGGGACAGTTG-CGTTAGCGA-GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAA 110537 | || || ||| || | | | || | |||||||||||||| ||||||| | || || Sbjct 775438 CTGG--CACTTGACGCTTGTAACGAGCCTCCTCCTCGTACTTTGTGTACAGCTTATCGAA 775381 Query 110538 TTCCT 110542 ||||| Sbjct 775380 TTCCT 775376 >seq320 Length=265502 Score = 113 bits (124), Expect = 5e-20 Identities = 146/201 (73%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCT 119574 |||| |||| ||||| |||||||||||||| || |||||||||||||| | || | Sbjct 15473 CTTCGTCCCTGGAGATAAGCTCATTACTGAAAGTGAGACCAGGCATGAGTCCACGCTTTT 15414 Query 119575 TTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAG 119634 | | ||| ||||||||| ||||| ||||| ||||| || ||||| ||| |||||| | Sbjct 15413 TCAACCAGAAGATGGCAGCGAAACTACCAGAGAAGAAAATTCCCTCGACAGCGGCGAAGG 15354 Query 119635 CGAATAGACGCTCAGCAAAAGGTCGAGACTTGT---CGAACCACTTGAGAGCCCAGTTGG 119691 ||| ||| | || || || | | || | || | | ||| ||||| |||||||| | Sbjct 15353 CGATTAGTCTTTCGGCGAACGTTGCAGTTTCGTTTACAATCCAGTTGAGTGCCCAGTTAG 15294 Query 119692 CCTTACGCTCTATGCAGGGGA 119712 | || | ||| ||||||| Sbjct 15293 CTTTCTTCGCTACACAGGGGA 15273 >seq30 Length=1589435 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 |||| ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| || Sbjct 499291 TCTT-TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCC 499233 Query 136772 CC 136773 || Sbjct 499232 CC 499231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588946786790400