Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq3496 410 4e-110 seq2494 125 2e-24 seq3888 118 3e-22 seq2827 105 2e-18 seq3621 102 2e-17 seq2954 102 2e-17 >seq3496 Length=5168 Score = 410 bits (454), Expect = 4e-110 Identities = 828/1223 (68%), Gaps = 49/1223 (4%) Strand=Plus/Plus Query 24674 CTATCCAATCAGCCCACCACTGCATCATCTCGCGGCGCTTTTCAATATACTGCGCGTGAT 24733 ||| ||||||||||||||||||||||||||| |||||| || | || || ||||| | Sbjct 504 CTAACCAATCAGCCCACCACTGCATCATCTCTTTGCGCTTGTCGAGGTATTGAGCGTGGT 563 Query 24734 TGTATATGCCGCGAATAGAGCCGCTGTCAGTGTGAGCCAGTTGCCTCTCGATAGCATCGT 24793 | || || || || |||| ||||||| | ||| || || ||| | || || |||| Sbjct 564 TATAAATTCCTCGTATAGTGCCGCTGGTTGCGTGGGCAAGCTGCTTTTCTATCACATCAG 623 Query 24794 GTGGCCATTCGTTTTCGTTCATGACTGTACTGAACTGGTGCCGAAAGCCGTGACCGCTGG 24853 |||||| ||||||| |||| ||||| |||||||||||||| || ||||| ||||| | Sbjct 624 CGGGCCATCCGTTTTCATTCAGTACTGTGCTGAACTGGTGCCGGAACCCGTGCCCGCTTG 683 Query 24854 CAAGACCCTCATAGCCTATCTGCCGAATAACAAGCAATACGGCATTTTCGCTTATCGGCT 24913 | | ||||||||||| || || || || || || |||||||||||||| ||||||| Sbjct 684 CTAATCCCTCATAGCCGATTTGTTTGATGACGAGTAACACGGCATTTTCGCTGATCGGCT 743 Query 24914 TTTTCTTATCATTGCGCCCGGCAAACACGAATGTTGATATTGGGGACGTAATAGGTTGTA 24973 || | || || || | || |||||||| ||| |||||| | || || || | | Sbjct 744 TTCTTTTGTCGTTCCTTCCAGCAAACACAAATTCTGATATATCG---GTCATGGGCTTGA 800 Query 24974 GTGTATTGAGCAAGTCCACTACCTGATGCGACATCGGCACCAGGTGGGTTCTACGCCCCT 25033 |||| | | ||| | | || || |||||||| || || || || | | | || Sbjct 801 GTGTTTGCAACAATGCGGCCACTTGCGTAGACATCGGGACGAGATGAATTTTTCTGCTCT 860 Query 25034 TCATTACTCCTTCGTCGATAGTAATAGTCCTGGTTTCAAAATCGACGTTTTCCCATTGCA 25093 ||||| || || || || || ||||||||||||||| ||||| || Sbjct 861 TCATT------------ATTGTGATCATCATGTTTTCAAAATCGACGTACCGCCATTTCA 908 Query 25094 TAGAGCGCATTTCTTTAGTCCTAAGCGCTGTATACTGTAAGATTTGAGTTGCTATTTTAG 25153 | ||||| | |||||| || || | || || ||||| || | ||| || || || | Sbjct 909 TCGAGCGAAGTTCTTTGGTTCTCATGGCGGTGTACTGCAATACTTGGGTGGCAATGCGTG 968 Query 25154 AAACTATACTCCCGGAAAAGCTGGACAGGGCGCGGTTGAATGCTGGTATCTGATCTGCGG 25213 |||| | || || || || ||| | || | |||||||| |||||||| || || | Sbjct 969 AAACGGTGCTGCCTGAGTAGGTGGCTAATGCCTGATTGAATGCCGGTATCTGGTCGGCAG 1028 Query 25214 GTAGAAACGGATAGTTCTTTTTCCGATAGCCTTTCATCGCATCCGCAAGGTCTGGTGCCG 25273 |||| || ||||| |||| ||| || || |||||||| || || ||||| |||| | Sbjct 1029 GTAGGAAGGGATAATTCTGTTTGCGGTAACCTTTCATGGCTCTGGCGAGGTCAGGTGATG 1088 Query 25274 GGTTGTATTTCGCACGCCCGGTGATGATGGCATAACGGAAAACCTCGCCACACCGACGCC 25333 | || ||||| || | |||||| | ||||| |||| ||| || | ||| || || | Sbjct 1089 GATTATATTTGGCTCTACCGGTGCTTATGGCGTAACTGAACACTGCACCAACGCGTCGAC 1148 Query 25334 GCGCTTTGTTGGCTCTCTCCATCGCGCCGCGCTCTTCAAA---GCGCCTTATC-ACAGAA 25389 | ||||| |||||||||||||| ||||| || | ||||| ||| | | | ||| | Sbjct 1149 GTGCTTTATTGGCTCTCTCCATAGCGCCTCGGTTCTCAAACTTGCGGATAACCGACA-AG 1207 Query 25390 AGAATTTGCATGGGGTCGATTTCGTTGATCTCGATACCGCCGATCATCGGCAAAATGTCA 25449 |||| ||| || || | || | || || | ||| ||||| || | ||| || Sbjct 1208 AGAA---CCATAGGCTCAACCTCTTCCATTCTGAGATGGCCTATCATTGGGAGAATATCG 1264 Query 25450 TCTTCAAACATGCGGTAAAGTTCACTGGCATAGCCGACAGACCAGACCTGTTTTTTATGC 25509 || | |||||||| | |||||| || ||| || | ||||| ||||| || || Sbjct 1265 TCATTGAACATGCGCTCAAGTTCTAGGGAATATCCTTCTGACCAAACCTGCCGCTTGTGG 1324 Query 25510 TCGTACCATTCTGCGTA----------TATTGATGAGAATGTGTTTTTTCCAGCAGCCTC 25559 | ||||| ||| | | |||| | ||| ||| || | | || | Sbjct 1325 GCATACCACTCTTTGAAGATGACGCCGAATTGGTCGCTATGACTTTCTTTCTTCTTCCGC 1384 Query 25560 TGCTTTGGCTATTCGCTTTTCACCTGAT--GGGTC-TATTCCCGCAGCTATCTTCCTCCT 25616 |||| ||| ||| ||| ||| ||| | | | ||| |||| |||| | Sbjct 1385 TGCT---GCTTTTC---TTTTACCGGATCCGCGCCAGATTTTACCAGC-ATCT------T 1431 Query 25617 GGCCTCTCCTTGCCGCGCACGCGCTTCATTGAGTGATATATCAGGATAAGAACCAATGAC 25676 || ||| || ||| | || || | || || || |||||||| ||| ||||| Sbjct 1432 TGCGTCTGCTGCTTTCGCTCTTGCCTCTGTTAGAGACATGTCAGGATATTCACCCATGAC 1491 Query 25677 GAGAGTCTTCTCTCTCCCTTCGATTCTATAGCGCAGCCTCCACACCTTCTTTCCCGTTGG 25736 || || || ||| | || |||| | ||||| | || ||||||||||||||| | || Sbjct 1492 CAGCGTTTTTTCTTTTCCGTCGAACCGGTAGCGTAACCGCCACACCTTCTTTCCGGCAGG 1551 Query 25737 GGGGATATAAAGGAATAGCCCGCCGGAATCAGCGAGGCGGTAAGCTTTGTCTTTTGGTTT 25796 | | | | ||||||| || || ||||| || |||||||| | || || || || Sbjct 1552 AGTAACAAACAGGAATAATCCTCCTGAATCTGCAAGGCGGTAGCCCGATTCCTTGGGCTT 1611 Query 25797 CGCGCTGTCGATCTGTTTGACAGTAAGCATATGGGCATAATCCTACGGGCATTTCGTCTT 25856 ||| | || ||||||||||| || ||||| ||||||||||| ||||||||| Sbjct 1612 GGCGATTTCTATCTGTTTGACGGTCAGCATGTGGGCATAATCTCGCGGGCATTTTTAACG 1671 Query 25857 ATGCCCGCAATATGCCCACAAAA 25879 |||||| |||||||||| ||||| Sbjct 1672 ATGCCCACAATATGCCCGCAAAA 1694 >seq2494 Length=1509 Score = 125 bits (138), Expect = 2e-24 Identities = 207/299 (69%), Gaps = 14/299 (5%) Strand=Plus/Minus Query 41095 GTTTCCGGCCATGCGATGGCTACCGGGCTGGGCGCT-GACGTGGTTCCGGGGCTGGAAGG 41153 ||||| || ||||| || |||||||| | || || || ||||| |||||||||| || Sbjct 1507 GTTTCGGGACATGCCATCGCTACCGG-CAGGCCGGGAGAGGTGGTGACGGGGCTGGAGGG 1449 Query 41154 GGAGTTCTGCAACATCAGAGAATCGACGGCAAAAATGGGAATTAAGCGAATGGCTAGTTT 41213 |||||| |||| ||| | || |||||| | ||||| | ||||| ||| ||||| Sbjct 1448 GGAGTTTTGCAGCATTCGCGAGAGCACGGCACAGATGGGGGTAAAGCGCATGAACAGTTT 1389 Query 41214 GATTGAGTATTCAACTGCGTGGGCCGTGGGTAACGGCGTACAGCTGCGCGAGGTTCGGTA 41273 || || ||| | ||||||| || || |||||||| |||||||||||| || Sbjct 1388 AATCGAATATACCCAGTCGTGGGCGGTCGGCAACGGCGTCAGGCTGCGCGAGGTGCG--- 1332 Query 41274 CGGGAACGATTATTTTGGGAGGGTGGCGTGACAGAAAAATCTAACACCCCCGCAGACTGC 41333 ||||| ||||| || ||||| |||||| ||||| |||| | Sbjct 1331 ---------TTATTNCGGGAGAGTCCGATGACACTAAAATCACACACCAGACCAGAGCAC 1281 Query 41334 AAAGACCGCTGGCGAACACCACCAGAGATATTCCAGGCGCTCAATGCAGAGTTTTGCTT 41392 || ||| ||||||||||| || ||| | |||||| |||| |||| ||||| |||| Sbjct 1280 AAGGACACATGGCGAACACCGCCCGAGGTCTTCCAGACGCTGGATGCGGAGTTCGGCTT 1222 Score = 113 bits (124), Expect = 1e-20 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 42587 ACTACATCAGTGAAAAAGGCGAGAAATACAGACAGAACGTTATTAACCTAATCC-GAAGT 42645 |||||||||| || |||||| | |||| |||| | | | || | | |||| | || Sbjct 435 ACTACATCAGCGAGAAAGGCAAAGCATACCGACAAAGCATCATCCAGATGATCCAGCAGC 376 Query 42646 AAAAACCTTGATATTAAAACCCTCGCAAGACTGAAATTTAAAATCACCGCTAACCCGCCA 42705 |||| ||| ||||| || || | ||||||||||||| || |||| ||| ||| ||||| Sbjct 375 AAAA-CCTCGATATCAACACTCCCGCAAGACTGAAAATTTCCATCATCGCCAACGCGCCA 317 Query 42706 GACAAACGCCGACGCGACCTCGACAACATGCTCAAAGCTCCTTTTGACTCGCTGACCCAC 42765 |||||||| || || |||||||||||| ||| ||||| || || ||||| || ||| Sbjct 316 GACAAACGACGCCGTGACCTCGACAACCTGCAAAAAGCGGTATTCGATTCGCTCACGCAC 257 Query 42766 G 42766 | Sbjct 256 G 256 >seq3888 Length=1800 Score = 118 bits (130), Expect = 3e-22 Identities = 194/277 (70%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 33990 TTCCCATCAACTAtttttttATTGTTGGTATCTACTGCAACAGTTGTACCGTCAGGGATA 34049 || || ||||| || || ||||| || || | || || || || |||||||||||| Sbjct 549 TTACCGTCAACAATCCGCTTGTTGTTCGTGTCAATGGCCACTGTAGTGCCGTCAGGGATA 608 Query 34050 ATAGGCTCCATGCTATTCCCGGTGGCAGGAAAGCATAGCACCCCTTCGCCGCTTGAATTT 34109 | || ||||| || || || | || || ||||| | || || || ||||| Sbjct 609 ACTGGTTCCATACTGTTTCCCCTTGCTGGGAAGCAGATAACGCCAGAACCATCAGAATTA 668 Query 34110 GCACCAACTCTGCGAAGAGTGGCCTTTGAAAATCTCAACATAAACCCATTATGATCTTCG 34169 || || | ||| ||||| || | || || |||| || |||||| || || |||||||| Sbjct 669 GCGCCGATTCTTCGAAGGGTAGATTTAGAGAATCGCAGCATAAAGCCGTTGTGATCTTCA 728 Query 34170 CTGCTAAAT-GTCCCATCACCACAAGCGAACTCGATATCCTTCAAAAAATGAACCTCTAC 34228 || | | | |||| || |||||||| || || ||||| |||| |||||| || || || Sbjct 729 CTCATGATTCGTCCGTTC-CCACAAGCAAATTCAATATCTTTCAGAAAATGCACTTCCAC 787 Query 34229 TTCATCGTCGTCTAGAGGCGTTTCATTATCCCAAGAA 34265 |||||| |||| || || |||| | ||||| ||| Sbjct 788 TTCATCATCGTGCAGTGGGGTTTTGCTGTCCCATGAA 824 >seq2827 Length=1523 Score = 105 bits (116), Expect = 2e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 35017 CAAACTACAGCAAACCGACACAGCGCGAGATTGATCGCGCAGAGACAGACTTACTCATCA 35076 ||||||||||||||||| |||| | || |||||||| || || || ||||| ||||||| Sbjct 1134 CAAACTACAGCAAACCGTCACAACAAGAAATTGATCGTGCTGAAACGGACTTGCTCATCA 1193 Query 35077 CGCTATCACAGCTTACTGGCAGAACGTTTGCAGACATGGCCGGATGGCACGAATCGAAAG 35136 || || | || || || | | ||| ||||| | ||||| || |||||||||||| Sbjct 1194 TCCTTTCCAAACTGACCGGGCGCAAGTTCGCAGAGTTTGCCGGGTGTCACGAATCGAAAA 1253 Query 35137 TAAGTCGAATGAACTGGCGAGATATCGCAACAGTGTTTTGT 35177 | ||||| | ||||||| |||||| || || || ||| Sbjct 1254 TCAGTCGCACCGACTGGCGCTTTATCGCCACTGTCTTGTGT 1294 >seq3621 Length=2627 Score = 102 bits (112), Expect = 2e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 35017 CAAACTACAGCAAACCGACACAGCGCGAGATTGATCGCGCAGAGACAGACTTACTCATCA 35076 ||||||||||||||||| |||| | || |||||||| || || || ||||| ||||||| Sbjct 306 CAAACTACAGCAAACCGTCACAACAAGAAATTGATCGTGCTGAAACGGACTTGCTCATCA 247 Query 35077 CGCTATCACAGCTTACTGGCAGAACGTTTGCAGACATGGCCGGATGGCACGAATCGAAAG 35136 || || | || || || | | ||| || || | ||||| || |||||||||||| Sbjct 246 TCCTTTCCAAACTGACCGGGCGCAAGTTCGCGGAGTTTGCCGGGTGTCACGAATCGAAAA 187 Query 35137 TAAGTCGAATGAACTGGCGAGATATCGCAACAGTGTTTTGT 35177 | ||||| | ||||||| |||||| || || || ||| Sbjct 186 TCAGTCGCACCGACTGGCGCTTTATCGCCACTGTCTTGTGT 146 >seq2954 Length=2725 Score = 102 bits (112), Expect = 2e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 35017 CAAACTACAGCAAACCGACACAGCGCGAGATTGATCGCGCAGAGACAGACTTACTCATCA 35076 ||||||||||||||||| |||| | || |||||||| || || || ||||| ||||||| Sbjct 1362 CAAACTACAGCAAACCGTCACAACAAGAAATTGATCGTGCTGAAACGGACTTGCTCATCA 1421 Query 35077 CGCTATCACAGCTTACTGGCAGAACGTTTGCAGACATGGCCGGATGGCACGAATCGAAAG 35136 || || | || || || | | ||| || || | ||||| || |||||||||||| Sbjct 1422 TCCTTTCCAAACTGACCGGGCGCAAGTTCGCGGAGTTTGCCGGGTGTCACGAATCGAAAA 1481 Query 35137 TAAGTCGAATGAACTGGCGAGATATCGCAACAGTGTTTTGT 35177 | ||||| | ||||||| |||||| || || || ||| Sbjct 1482 TCAGTCGCACCGACTGGCGCTTTATCGCCACTGTCTTGTGT 1522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151164076813056