Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq2351 105 7e-18 seq3764 96.9 3e-15 seq2689 86.0 6e-12 >seq2351 Length=10305 Score = 105 bits (116), Expect = 7e-18 Identities = 249/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 54247 CGGTTCTCTTCAAGACCACGGTTGTTCTTCAGGACCACAACATCATCAAATTGATAATGC 54306 ||||| |||| | ||||||||||||||||| |||| | || | || |||| Sbjct 2953 CGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGC 2894 Query 54307 CAGATAGGGATATAGCAA-GTTGCTGATCCGCCACGAATACCGCCTTGAGAGCAAGACTT 54365 || | ||| || | ||| ||||| | |||||| || | |||||| || ||||| || || Sbjct 2893 CACAGCGGG-TAAAACAACGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTT 2835 Query 54366 TAATGCCCCAGTCAG-ATAT-TTTAT-GAAAGGAACCAGGCCTGTGTGCACCATTTCACC 54422 | ||| ||| | | || ||||| |||||||| ||| || || | |||||| Sbjct 2834 CACTGCG---GTCTGGAAATGTTTATAGAAAGGAATACAGCCAGTATGGAATGCTTCACC 2778 Query 54423 TTTTCGGATAGGGCTACCGATGCCACGAATTGCTCCAACATCAAATCCGATCCCAGCGCG 54482 || || |||||||| | ||||||| || | | || ||||| || || || Sbjct 2777 ACCGCGAATCGGGCTACCCAGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACG 2718 Query 54483 TTTGGATACATAATCAACAATACTTTTGGCTGTAGCATTGATTGAGTCCAAAGTGTCACC 54542 | || || || | || ||| ||| || || || || || |||| |||| || Sbjct 2717 CTGTGAAACGTATTTCACGATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCC 2658 Query 54543 GGTTTTGATAAGAACACAAGAACTGAATTGGCGGGTTGGGGTACGAACGCCGGACATGAT 54602 | | || | || || || ||||| || |||||||||||||| |||||||||||||| Sbjct 2657 GCACTCAATCAACACGCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGAT 2598 Query 54603 GGGTGTTGG 54611 || ||||| Sbjct 2597 CGGCGTTGG 2589 >seq3764 Length=2321 Score = 96.9 bits (106), Expect = 3e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 137230 TGGCCCCGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289 ||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||| Sbjct 2199 TGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAA 2140 Query 137290 TCCAGCCAGGGTCACCAAATA 137310 ||| | ||| ||||| ||| Sbjct 2139 CCCAACAGGGGCCACCATATA 2119 >seq2689 Length=2575 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 1460 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 1519 Query 137691 CATCGTCGCCAAATT 137705 || | |||||||| Sbjct 1520 CAGAGGAGCCAAATT 1534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502442277626880