Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq151 165 7e-35 seq22 165 7e-35 seq162 109 4e-18 seq10 98.7 8e-15 seq3563 86.0 5e-11 >seq151 Length=1085305 Score = 165 bits (182), Expect = 7e-35 Identities = 292/424 (69%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 552180 TTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTG 552237 |||||||| || |||| || |||| | ||||| ||||||||||||||||| || | Sbjct 487310 TTCAATGGAAAGGAATTGAAC--AAGTCGATCAATCCTGATGAGGCTGTTGCCTACGGAG 487253 Query 552238 CCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTAC 552297 | || | ||||||||||||||| |||| | | ||| | || || | | | Sbjct 487252 CTGCTGTCCAAGCAGCTATTCTTCATGGAGACAAGTCTGAGGCTGTGCAGGATCTGCTTC 487193 Query 552298 TTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATC 552357 | | ||||| ||||| || || |||||| | || || | ||||||| | |||||| || Sbjct 487192 TGCTCGATGTGACTCCACTGTCACTTGGTATTGAGACTGCTGGAGGTGTGATGACTGCTC 487133 Query 552358 TTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAG 552417 | ||| | || ||||| || |||||| ||| | | | || | || ||| | | Sbjct 487132 TCATCAAGAGGAATACCACAATTCCTACTAAGCAGACCCAGACGTTCACCACTTATGCTG 487073 Query 552418 ATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATA 552477 |||| || ||| ||| || || ||| ||| |||||| || | || || |||| Sbjct 487072 ATAACCAGCCTGGTGTGCTGATCCAGGTTTATGAGGGAGAACGAGCCATGACGAAGGATA 487013 Query 552478 ATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGC 552537 |||||| || || | ||| | | || || || || ||||||||||| || || | Sbjct 487012 ATAATCTTCTGGGCAAGTTTGAGCTCTCTGGGATCCCACCAGCTCCTCGTGGCGTCCCCC 486953 Query 552538 AAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATA 552597 | || || || || || ||||||||||| ||||| ||| ||||||| ||||| ||||| Sbjct 486952 AGATCGAGGTCACCTTTGATATCGATGCTAATGGCATTCTGAATGTCTCTGCTGTTGATA 486893 Query 552598 AATC 552601 |||| Sbjct 486892 AATC 486889 >seq22 Length=2558081 Score = 165 bits (182), Expect = 7e-35 Identities = 371/555 (67%), Gaps = 18/555 (3%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || ||||| ||||| ||||||||||| ||||| ||||| |||||| | || || Sbjct 1851578 AGCAATCGGTATTGATTTGGGAACCACATACTCCTGTGTGGGTGTGTGGCAACAAGGAAA 1851637 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| ||||| || ||||| || || || |||||||| || ||||| || ||| | ||||| Sbjct 1851638 AGTGGAAATCATCGCCAACGACCAGGGCAACAGAACAACACCATCATACGTTGCCTTCAC 1851697 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || || ||| | || |||||||| || |||||| | ||||| | || Sbjct 1851698 CGACACCGAGAGGTTAATCGGCGATGCAGCCAAGAATCAAGTGGCGATGAATCCAGCTAA 1851757 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| |||| || || ||| | |||||||| | | || | || | | | ||||| Sbjct 1851758 CACTGTTTTCGACGCCAAAAGGTTAATTGGCCGCAAATTCGACGACCCCAAAATCCAGGC 1851817 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA--- 550287 || || || || ||||| ||| || | || | | ||||| || | ||||| Sbjct 1851818 GGACATCAAACACTGGCCGTTCAAAGTGGTCAGCGAGGGAGGAAAGCCAAAGATTGAGGT 1851877 Query 550288 --AGCTAC---TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATG 550342 || | | | || | | ||| ||| || || | || || ||| Sbjct 1851878 GGAGTTCCGCGGCGAGAGGAAGAGGTTCAAC--------CCCGAGGAGATCAGTTCCATG 1851929 Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACG-GATGC 550401 || || | ||| ||||| | ||||| || ||| | || || ||| |||| || || Sbjct 1851930 GTCTTGACGAAGATGAAGGAGACAGCTGAGGCATTTCTCGGGGAA-AAGGTACGTGAAGC 1851988 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 || || || || || ||||| || || || ||||| || || || ||||| || ||||| Sbjct 1851989 TGTCATCACAGTCCCGGCATACTTCAACGATTCACAGCGCCAGGCCACTAAGGACGCTGG 1852048 Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 |||||| ||||| || || || | || ||||||||||| || || || |||||||| Sbjct 1852049 TGCTATTGCCGGACTCAACGTACTCAGGATCATCAATGAACCCACAGCAGCGGCACTTGC 1852108 Query 550522 ATATGGACTTGATAA 550536 || || | ||||| Sbjct 1852109 CTACGGTTTGGATAA 1852123 >seq162 Length=620880 Score = 109 bits (120), Expect = 4e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 ||| | | ||||||| | ||||| ||||| ||||| || || || || | ||||| || Sbjct 49816 AGTGAAGAATGCAGTTGTCACTGTCCCAGCGTATTTCAACGATTCTCAGAGGCAAGCAAC 49875 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 |||||||||||| | |||||||| || || || || || | ||||| ||||| || || Sbjct 49876 TAAAGATGCTGGTCAAATTGCTGGTCTCAACGTCCTCCGAGTCATCAACGAACCGACGGC 49935 Query 550510 TGCTGCACTTGCATATGGACTTGATAAA 550537 ||| |||||||| |||||| | || ||| Sbjct 49936 TGCCGCACTTGCCTATGGAATGGACAAA 49963 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 552471 AAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGA 552530 || |||||||| | |||||| |||| | | |||||||| || ||||| |||||| Sbjct 51221 AATGATAATAAGCTACTTGGACAATTTACACTTGTTGGTATTCCACCAGCTCCACGTGGA 51280 Query 552531 GTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || || || || ||||||||||| || || ||||||||||||||| | |||| ||||| Sbjct 51281 GTTCCACAGATCGAAGTTACTTTTGACATTGATGCCAATGGAATTGTCCATGTATCTGCT 51340 Query 552591 TGTGATAA 552598 | || || Sbjct 51341 AGGGACAA 51348 >seq10 Length=2352850 Score = 98.7 bits (108), Expect = 8e-15 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || || ||||| ||||| ||| | |||| ||| ||||| || | ||||||| Sbjct 820108 AGACGAAGAACGAGATGGAGGGTGGACTCTTTTTG--AATGTTGTAGTCTGAAAGAGTTC 820051 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 || || || | |||||| || || || || | | || ||||| || || || |||| Sbjct 820050 TTCCGTCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCTT 819991 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGA 563433 |||||||||||||||| ||| || ||||| || |||| || || ||| || Sbjct 819990 CTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGCTTCGAC-TTCCAGG 819932 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||||| ||||| | || ||||| ||||| ||||| Sbjct 819931 GTGATGGTTTTGCCAGTCAATGTCTTAACAAAAATCTGCAT 819891 >seq3563 Length=5470 Score = 86.0 bits (94), Expect = 5e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || || || || || || || || || || |||||||| || | |||||||| || || Sbjct 3878 GTCACTGAAGCGGTTATCACCGTGCCGGCGTATTTTAACGATGCGCAACGTCAGGCAACC 3819 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||| || || || || || || | || ||||| ||||||||||| || || Sbjct 3818 AAAGATGCAGGCCGCATCGCAGGTCTGGAAGTAAAACGTATCATCAATGAACCGACAGCG 3759 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| || || || || ||||| ||| Sbjct 3758 GCTGCGCTGGCGTACGGTCTTGACAAA 3732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029086154264320