Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_016073.1 Length=157950 Score E Sequences producing significant alignments: (Bits) Value seq2351 100 3e-16 seq3764 95.1 1e-14 >seq2351 Length=10305 Score = 100 bits (110), Expect = 3e-16 Identities = 282/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 53887 TTCACCAGGCGCTCGAACATGACGCGGTTAATCTGAATCCCATAGTCGATACGGCGTTCA 53946 || |||||||||| |||| | ||| | ||| | || || |||| | || | Sbjct 3013 TTGACCAGGCGCTGATACATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACG 2954 Query 53947 CGGTTCTCTTCCAATCCACGGTTGTTTTTGAGAACAACGACATCATCAAATTGATAATGC 54006 ||||| |||||| ||||||||||| || || || | | || | || |||| Sbjct 2953 CGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGC 2894 Query 54007 CAGATGGGAACATAGCATGTTGCCGATCCACCACGGATACCGCCTTGAGAGCAAGACTTC 54066 || | || | | | ||||||| ||| || || | |||||| || ||||| || ||| Sbjct 2893 CACAGCGGGTAAAACAACGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTC 2834 Query 54067 AGGGCACCAGTC---AAATACTTGATGAATGGAAC-CAGACCTGTATGGACCATTTCCCC 54122 | || ||| |||| || ||| |||| ||| || ||||||| ||| || Sbjct 2833 ACTGCG---GTCTGGAAATGTTTATAGAAAGGAATACAG-CCAGTATGGAATGCTTCACC 2778 Query 54123 TTTACGGATAGGGCTACCGATGCCACGAATTGCCCCAACATCGAATCCGATGCCAGCACG 54182 || || |||||||| | ||||||| || | | | ||||| || ||||| Sbjct 2777 ACCGCGAATCGGGCTACCCAGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACG 2718 Query 54183 TTTGGAAACATAATCCACGATGCTTTTCGCAGTGGCATTAATTGAGTCCAATGTGTCACC 54242 | ||||| || | |||||| | | ||||| ||||| || |||| |||| || Sbjct 2717 CTGTGAAACGTATTTCACGATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCC 2658 Query 54243 AGTTTTGATCAATACACAAGAGCTGAACTGTCGGGTCGGGGTGCGGACGCCGGACATAAT 54302 | ||||| || || ||||||||||| ||||| ||||| || ||||||||||| || Sbjct 2657 GCACTCAATCAACACGCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGAT 2598 Query 54303 AGGTGTTGG 54311 || ||||| Sbjct 2597 CGGCGTTGG 2589 >seq3764 Length=2321 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 137449 TGGCCCCGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137508 ||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||| Sbjct 2199 TGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAA 2140 Query 137509 TCCAGCCAGGGTCACCA 137525 ||| | ||| ||||| Sbjct 2139 CCCAACAGGGGCCACCA 2123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505286936524800