Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_016570.1 Length=157304 Score E Sequences producing significant alignments: (Bits) Value seq2351 96.9 3e-15 >seq2351 Length=10305 Score = 96.9 bits (106), Expect = 3e-15 Identities = 281/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 52470 TTCACCAGGCGCTCGAACATGACGCGGTTAATCTGAATCCCATAGTCGATACGGCGTTCA 52529 || |||||||||| |||| | ||| | ||| | || || |||| | || | Sbjct 3013 TTGACCAGGCGCTGATACATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACG 2954 Query 52530 CGGTTCTCTTCCAATCCACGGTTGTTTTTGAGAACAACGACATCATCAAATTGATAATGC 52589 ||||| |||||| ||||||||||| || || || | | || | || |||| Sbjct 2953 CGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGC 2894 Query 52590 CAGATGGGAACATAGCATGTTGCCGATCCACCACGGATACCGCCTTGAGAGCAAGACTTC 52649 || | || | | | ||||||| ||| || || | |||||| || ||||| || ||| Sbjct 2893 CACAGCGGGTAAAACAACGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTC 2834 Query 52650 AGGGCACCAGTC---AAATACTTGATGAATGGAAC-CAGACCTGTATGGACCATTTCCCC 52705 | || ||| |||| || ||| |||| ||| || ||||||| ||| || Sbjct 2833 ACTGCG---GTCTGGAAATGTTTATAGAAAGGAATACAG-CCAGTATGGAATGCTTCACC 2778 Query 52706 TTTACGGATAGGGCTACCGATGCCACGAATTGCCCCAACATCGAATCCGATGCCAGCACG 52765 || || |||||||| | ||||||| || | | | ||||| || ||||| Sbjct 2777 ACCGCGAATCGGGCTACCCAGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACG 2718 Query 52766 TTTGGAAACATAATCCACGATGCTTTTCGCAGTGGCATTAATTGAGTCCAATGTATCACC 52825 | ||||| || | |||||| | | ||||| ||||| || |||| | || || Sbjct 2717 CTGTGAAACGTATTTCACGATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCC 2658 Query 52826 AGTTTTGATCAATACACAAGAGCTGAACTGTCGGGTCGGGGTGCGGACGCCGGACATAAT 52885 | ||||| || || ||||||||||| ||||| ||||| || ||||||||||| || Sbjct 2657 GCACTCAATCAACACGCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGAT 2598 Query 52886 AGGTGTTGG 52894 || ||||| Sbjct 2597 CGGCGTTGG 2589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503219839057920