Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq2351 553 3e-152 seq2689 100 5e-16 seq2373 86.0 1e-11 >seq2351 Length=10305 Score = 553 bits (612), Expect = 3e-152 Identities = 796/1117 (71%), Gaps = 14/1117 (1%) Strand=Plus/Minus Query 207821 TTACAGTTGGAAATCACCGAACTCGGCAGTATCTACTTCTGAGTCGATCTGACCTACCAG 207880 ||| |||||||| |||| | ||| | | | | || || || || || || ||||| Sbjct 5470 TTAGAGTTGGAAGTCACTCAGGTCGTCGGCGTTGATCTCAGAATCAATTTGGCCGACCAG 5411 Query 207881 GTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTGAACGTTGTCAGTTACCAGCCATGA 207940 |||||| ||||| ||||| || ||||||||||| |||||||||| |||||||| | Sbjct 5410 ATAAGAACTCACTTCCACTTCTTGCGGAGCAACCTGCACGTTGTCAGAGACCAGCCAGGC 5351 Query 207941 GTTAATCCATGGAATTGGGTTAGAGTTGGTTTTGAATGGAAGATCCAAACCGATCGCCTG 208000 |||||||| || || ||||||| | |||| ||| || | || || | ||| || Sbjct 5350 ATTAATCCACGGGATCGGGTTAGTGCGCGTTTGGAACGGCAAGGGCAGCCCTACCGCTTG 5291 Query 208001 CATACGGATGTTGGTAATGTACTCAACATACTGGCAGAGGATCTCTTTGTTCAGACCGAT 208060 ||| ||||| ||||| ||||| ||||| ||||||||||| || ||||||||||| || || Sbjct 5290 CATGCGGATATTGGTGATGTATTCAACGTACTGGCAGAGAATGTCTTTGTTCAGGCCAAT 5231 Query 208061 CATTGAACCATCTTTGAACAGATAGTCAGCCCACTCTTTTTCTTGCTGAGCGGT-AGCAA 208119 ||| ||||| || |||||| || || ||||||||||| || ||||| || | |||| Sbjct 5230 CATCGAACCGTCGCGGAACAGGTATTCCGCCCACTCTTTCTCCTGCTGTGCAGCCAGCA- 5172 Query 208120 CGAACATGTCGTATGACTCTTGACGACACTCTGCTGCAATCTCAGCCATCTCTGGATCAT 208179 | |||| |||||| | || || | ||| || | || || | ||||| || ||||| | Sbjct 5171 CAAACAGGTCGTAGCATTCCTGTTGGCACGCTTCGGCGATTTGTGCCATTTCCGGATCGT 5112 Query 208180 CTTTACCAGAGTTCATCAGGTTGATGATGTGCTGAGTACCAACCATGTGAAGTGCTTCGT 208239 | | || || |||||| || | || ||||| ||||| || ||| || ||||| | Sbjct 5111 CCTGGCCGGAACGCATCAGATTCAGCATATGCTGGGTACCGGTCAGGTGCAGCGCTTCAT 5052 Query 208240 CACGTGCGATCATTTTGATGATCTTAGCGTTACCTTCCATCAGCTTACGTTCGGCAAATG 208299 | || ||||||| |||||| || || ||||| || |||||||| | ||||||||||| | Sbjct 5051 CGCGGGCGATCAGTTTGATAATTTTGGCGTTGCCCTCCATCAGTTCGCGTTCGGCAAAGG 4992 Query 208300 CGAATGAGCAAGCGAAGGATACGTAGAAACGAATAGCTTCAAGTGAGTTGATAGATTGCA 208359 |||||||||| ||||| || || ||||| || ||||| || | ||||| || Sbjct 4991 CGAATGAGCAGGCGAAACTGACATAAAAACGGATGGCTTCCAGCGCGTTGACGCTCATCA 4932 Query 208360 GAGCCAGGTACAGTGCTTTCTTAATAGCACGAAGATTAACATTAACCTTCTCGCCATTGA 208419 | ||| || || |||||| | ||| | |||||||| | ||| | | || || | Sbjct 4931 GGCACAGATAAAGCTGTTTCTTCAAGGCATGCAGATTAACGGTGACCGTTTTACCGTTCA 4872 Query 208420 C----TACGTG--GTCACCCAGACCCAGGTAATAGTACTGGTTGATCAAGGCAATCAGTT 208473 | | |||| |||||||| ||||| ||| || | || ||| | ||||| | Sbjct 4871 CCTGATGCGTGCCTTCACCCAG---CAGGTGATAATA---GCTGGTCAGTTCGATCAGAT 4818 Query 208474 TGTCGTAGTAATGGGAAACAGATGCAGCACGTTTCTTGATATGTTCGTTATCTACAACGT 208533 ||| ||| || ||| | | ||||||||| || | ||| || || | | Sbjct 4817 CGTCATAGAAAGAGGAGATGTCTTTTGCACGTTTCAGAATCTCTTCATTGGTAACGATAT 4758 Query 208534 CATCAAAGACAATGGAAGGATCGTTAACGATGTTCCTGATGATGTGAGTATAGCTACGAC 208593 |||| || || | | |||||||| || || || | |||||| || |||||| ||| Sbjct 4757 CATCGAACACCAGTGCCGGATCGTTGACAATATTGCGGATGATATGGGTATAGGAACGGG 4698 Query 208594 TGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCATGTTTCCAGCTCTGGGATAGAGC 208653 ||||||||||| || || ||||||| || ||| ||||||| ||||||||| ||| Sbjct 4697 AATGGATGGTTTCTGAAAATGCCCAGGTTTCTATCCAGGTTTCCAACTCTGGGATGGAGA 4638 Query 208654 AGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTGGATAGAGTCCAGTAGTGTCTGAT 208713 | ||| | ||||| ||||| || | || || || || |||||||| ||||| || | Sbjct 4637 TCAGCGGTAACAATGCGACGTTCGGGCTGCGTCCTTGAATGGAGTCCAGCAGTGTTTGGT 4578 Query 208714 ATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATCTGGTAAAGCCATGTAGTCAATAC 208773 ||||||| || |||||||| | ||| || || || ||||||| ||| ||||| || | Sbjct 4577 ATTTCAGATTGCTGATGAAGATGTGCTTTTCATGTTCTGGTAGCGCCTGATAGTCGATGC 4518 Query 208774 GGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGAAAGTTGTTTCTCAATGA 208833 | || || || ||||| || ||||| ||||||||||| || || || |||||||| || | Sbjct 4517 GATCGCGAGACACATCCACCTCTTCTGGACGCCAGAAAAAGGAGAGCTGTTTCTCTATCA 4458 Query 208834 GTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAACGAGAAACGTTGACGTTTTGACCCA 208893 | ||||| || || ||||| || || || |||||||| | ||||| ||| ||||| | Sbjct 4457 GCTTCTCGAATATTTCATATTTTTGCTGATCGTAACGCGCTACGTTAACGGACTGACCAA 4398 Query 208894 GGAACATGTGTTCTTGTAATTGATCGTTTTTGTTTTG 208930 |||||| |||| | | ||||||||||| || || Sbjct 4397 AGAACATCGGTTCCAGAAGCTGATCGTTTTTATTCTG 4361 >seq2689 Length=2575 Score = 100 bits (110), Expect = 5e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 16822 AATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCT 16881 ||| |||| | |||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 1534 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 1475 Query 16882 ACCGACTGAACTACA 16896 ||||||||||||||| Sbjct 1474 ACCGACTGAACTACA 1460 >seq2373 Length=3101 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 16119 AATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTAT 16178 ||||| ||||||| ||||||||||||| ||||| | ||||||||||| |||||||| Sbjct 1576 AATGGTACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGTTGCTCTAT 1517 Query 16179 CC-ACTGAGCTAAGAGCGC 16196 || ||||||||||| |||| Sbjct 1516 CCAACTGAGCTAAGGGCGC 1498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911049209717760