Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq2625 486 5e-133 seq3361 237 4e-58 seq2782 167 6e-37 seq2416 127 5e-25 >seq2625 Length=4495 Score = 486 bits (538), Expect = 5e-133 Identities = 1013/1497 (68%), Gaps = 20/1497 (1%) Strand=Plus/Minus Query 16962 GAGCAGGCAATACAGGATTCCAGCCTTTTTGACGTGGCTGTAGCGTGTTTTTTGAGAGGA 17021 ||| | |||| || ||| ||||||||||||| ||||| || || || | || || Sbjct 1487 GAGAACGCAAAGCATGATGCCAGCCTTTTTGAGGTGGCGGTGAGTTGCTTCCTCAGGAGA 1428 Query 17022 TAATTGAATGAGACAGGAATGTATTCAGGCCGTGCAACAGGCAGCACAGCGCACTCTTA- 17080 ||| |||||| | |||||||| || ||||| || |||| | |||||| || ||| Sbjct 1427 TAAAACGATGAGAGACGAATGTATCCAAGCCGTAAAAGCGGCATCGCAGCGC-CTATTAA 1369 Query 17081 CAGCCAGAGAAATACAGAATATCGAAGACCGCATTTACCGCAATATGCGAGCTATTGCCC 17140 |||| |||||||| ||| ||||| |||||| || ||||| | | || | Sbjct 1368 CAGCGGCTGAAATACAAGGTATTGAAGATCGCATTGTGAAAAACATGCGTAATTTGGCAC 1309 Query 17141 GTGACGATCCGATGTCATGGCGTCAACTTACTGATGCTGAACGCCTGCGCCGCGCCGGGC 17200 | | || || | |||||||| | | ||| | || || |||||||||| || | Sbjct 1308 GAAATGACCCTACTTCATGGCGGGCTATGAGTGAATCAGAGCGGATGCGCCGCGCTGGTC 1249 Query 17201 AACTGGCCGCTGAAGATTTGCAGCGAGAGGCGGCACTGAAAAAACGCCGTGTCTCGCTTA 17260 | || ||||| || || ||| |||||||||| | | |||||||| ||||| || | | Sbjct 1248 AGCTTGCCGCCGATGAATTGGGGCGAGAGGCGCTATTAAAAAAACGTCGTGTAGCGTTAA 1189 Query 17261 CCATCGCAGCGCGTCAGCGCCTGGACAACTTCATTAACAGTTATCATGGTGCTGACGGAA 17320 |||| || ||||| || || ||||| | || || || | || | || Sbjct 1188 CCATTGCTGCGCGGCAACGGTTGGACGCTTATATCAAAGACTACAAAGGGAAAAATGGCG 1129 Query 17321 AGCTAGGCGCACTCAACCGCACGATCGCCTTCAGCGCTGACGGGAAATCAAACTTTCTGT 17380 || | || || ||||| ||||| || || || ||||| || | | ||||| | Sbjct 1128 CACTGGAAGCGCTAAACCGTACGATAGCATTTCATGCAGACGGCAAGGCCCATTTTCTTT 1069 Query 17381 CTGTTGAGTCACGCACGAAAGCGACACGTGATTACGCATTAAGCCAGTTACAGGAGGCGT 17440 | || ||||||||| | || || || |||||||| || | || |||||| |||| | Sbjct 1068 CCGTAGAGTCACGCGCAAAGGCAACCCGTGATTATGCGCTTAGTCAGTTAGAGGAATTAT 1009 Query 17441 TCGAGGCTGTTGATCCTCGTTTCTTCGGGCTGTTTGAAGATGAGGCTGGAGTCCGTGATC 17500 | || || || ||||| ||||| ||| | | | ||||| || ||||| || |||| Sbjct 1008 TTGAAGCCGTCGATCCGCGTTTTTTCCAGTGGCTAGAAGACAAGCAGGGAGTTCGGGATC 949 Query 17501 TGGTGTTTGAGATGCGCGGCCAGAAAACTGGAAATGCGAAAGCCATGAAAGGGGCGAAAG 17560 | | | ||| ||||| || ||| | || ||||||| | ||| | ||||||||| ||| Sbjct 948 TTATTTATGAAATGCGTGGGCAGGACACCAGAAATGCCAGAGCTAAAAAAGGGGCGCAAG 889 Query 17561 CCTGGGGTGAAGTAACTGAACTACTTCGCCGCAGATTCAATGATGCTGGTGGAGATATCG 17620 | ||| ||| ||||| |||||||| | || || ||||| ||||| ||||| | Sbjct 888 CATGGAAGCGGGTATCTGAATTACTTCGCACACGGTTTAACGATGCCGGTGGGGATATTG 829 Query 17621 GCTACCTGGAAAACTGGGGTATACCTCAACATCACTCGATGGAAAAGGTTGGGGCGGTAT 17680 | || |||| | ||||| | ||||| |||||||| ||||| || |||| | || Sbjct 828 GTCACTTGGAGGATTGGGGGCTTCCTCAGCATCACTCAATGGATAAAGTTGCCAAAGCAT 769 Query 17681 CGAAGGATAAGTGGGTAAGTGATGTGATCGGTAAACTCGATCGCAAATATTACACCCGAT 17740 |||| ||| ||||||| | ||| ||||| |||||||| || || | |||| | Sbjct 768 CGAAAGATGAGTGGGTTGGGTTTGTTATCGGAAAACTCGACCGTAATAAATACATTAAAG 709 Query 17741 CCGACGGCCAGTTGATGAATGATACTGAG-TTATCATCTTTTCTCGGTGAAGCCTATAAC 17799 ||||| | |||| ||| ||||| ||| | ||| || ||| | || ||| | Sbjct 708 AAAACGGCGAACCAATGACAGATGCTGAGATTAGTAA-TTTCCTTGGTAATGCTTATGAA 650 Query 17800 ACGATTGCCACAGGTGGCCTTAATAAACTGACTGATACCGGTATGCGTATTTCCGGTGCG 17859 || || ||||| || || | |||||||| ||||| ||| || | | || |||||| Sbjct 649 ACCATAGCCACGGGCGGGATAAATAAACTCGGTGATAAAGGTCTGAGGGTATCAGGTGCG 590 Query 17860 CGGGCAAACCGTGGCAACGCCTCACGCCAGATCCACTTTAAAGACGCTGATTCATACCTT 17919 || |||| | || | ||| |||||||||||| ||||| || ||||| ||||| | Sbjct 589 CGATCAAATAGGGGTAGCGCTGAACGCCAGATCCATTTTAACGATGCTGAATCATATTTG 530 Query 17920 CAGTACCAGCAAATGTACGGCGACCGTTCACTCTGGGAAATCATGGTAGGGCACCTGGAA 17979 | || ||||| | ||| || || || ||||| || | || ||| | || Sbjct 529 GATTATCAGCAGCGTTTCGGGGAAAAATCGCTTTGGGATATTCTCGTCAACCACATCGAG 470 Query 17980 GGTATCAGTAAAGACATTGCGCTGGTGGAAACCTACGGGCCAAACCCTGATCACGTGTTC 18039 || || || ||||| ||||| ||||| ||||||||||| || ||||| || ||||| ||| Sbjct 469 GGGATTAGCAAAGATATTGCCCTGGTTGAAACCTACGGCCCTAACCCCGACCACGTTTTC 410 Query 18040 CGCTCTCTGCTTGATCAGACGAAATCAG--AGACAGCTACGGCTAACCCGCAGGATACCG 18097 || | ||||| ||| || | ||| | || || |||| || || | | | Sbjct 409 CGTGCGCTGCTGGAT--GAATTGACCAGTAAAACCGCAACGGAAAATCCTCGCCGCGCTG 352 Query 18098 GTCGCATAGAGCG-CCTGGCAAACAATACTGAGAACCTGTATAACTTTATTTCTGGTAAA 18156 | |||| ||| | | | | ||| |||||| ||||| ||||||||| | | || ||| Sbjct 351 GAAGCATTGAGAGTCTTAGTGAAC-GTACTGAAAACCTCTATAACTTTGTCGCAGGAAAA 293 Query 18157 ACTCAGCCTGTTGCAAACCCGCATATTGCTCGCTGGTCGGATAACATCCGCAACTGGATG 18216 || | ||| | || |||| ||||||||||||||| ||| || | ||||||||| | Sbjct 292 ACCCGGCCAATAGCTAACCGAAGTATTGCTCGCTGGTCTGATGACCTGCGCAACTGGTTA 233 Query 18217 GTTGCCAGTCGTCTCGGTTCCGCACTGTTATCATCGTTCTCTGATCTTGGAACCATGTAC 18276 ||||| ||| || ||||| || ||| | | ||| | || ||| || || |||||| Sbjct 232 ATTGCCTCTCGCCTGGGTTCTGCGCTGGTCACGTCGCTATCAGATAACGGCACGATGTAC 173 Query 18277 CTGTCAGCGAAGGTTACCAACCTTCCGATGAATCAGCTATTCCGTAACCAGCTTGAAGCT 18336 || | || || | ||||||||| ||| || || || ||||||||||| | ||| Sbjct 172 CTCACCGCTCGAGTAAACAACCTTCCTATGGCGCAACTCTTACGTAACCAGCTAGCAGCG 113 Query 18337 ATGGACCCAACGAAT-----CGCACTGAGCTTGCCAGGGCACGTCGTGCTGGCCTGGCTA 18391 | |||| || ||| || |||||| || ||| |||||||| || |||| | Sbjct 112 TTCAACCCTACAAATAAAGACGAACTGAG---GC--TGGCGCGTCGTGCAGGATTGGCGA 58 Query 18392 TGGAATCACTGCTCGGCAGTGTTAACCGCTGGGCGATGGATAATATGGGGCCGTCTG 18448 |||| | || | || || | |||||| ||||| | ||| ||||||||||| |||| Sbjct 57 TGGATACGCTTATTGGTAGCGCTAACCGTTGGGCTACGGACAATATGGGGCCATCTG 1 Score = 100 bits (110), Expect = 7e-17 Identities = 194/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 14860 GACTATTACGCTGGGGTGAT--GGCGAAGAAGGGTGTGGTTTCGGGTGAAATTGACAGTG 14917 || |||||||||||||| | | || | |||||| ||||| || || ||||| Sbjct 3574 GATTATTACGCTGGGGTAAAAAGCCGCA--AGGGTGATGTTTCCGGCAAATATGACAAA- 3518 Query 14918 ACTCA-TGGAAGCAGGCTGTTAACGTAGCTACTGGTGGCGTGCACGATTATAACGG-CAT 14975 |||| ||| | || || | ||||| || || || | |||| || ||||| || Sbjct 3517 ACTCTCTGGCGTGAAGCGATTGATGTAGCAACGGGGGGGATCTACGACTACAACGGGCAA 3458 Query 14976 GGGCAGTGTTCTGTTGCCTTGGGGGATGTCTGCCGAACAATTTGATAAACAAGTTGATCA 15035 ||| | ||| | ||||| ||||| ||||| | || ||||| |||| ||||| | | Sbjct 3457 GGGAAA-GTTTTATTGCCGTGGGGAATGTCAGAGGATCAATTCAATAATGAAGTTAACCG 3399 Query 15036 GGCATGGAAAACTCAGGTGACTGGCGCAGGAATTAAAGCACCGCCAGGCCAGTACGGTCT 15095 || |||||| |||| | | || ||| || || ||||| || || || || || ||| | Sbjct 3398 TGCGTGGAAATCTCAAATTATTGACGCGGGTATCAAAGCCCCACCCGGACAATATGGTTT 3339 Query 15096 GCAAAGCTATGGAGATAGCCAGTATCTGGTGAAACTCGG 15134 ||||||||||| || ||||| || ||| | ||||| || Sbjct 3338 ACAAAGCTATGGCGACAGCCAATACCTGATAAAACTTGG 3300 >seq3361 Length=1041 Score = 237 bits (262), Expect = 4e-58 Identities = 442/646 (68%), Gaps = 10/646 (2%) Strand=Plus/Plus Query 18863 CAGGTATCCAGCGCGGAACATGGAAAGGTGAATTAACCCGCAGCGTATTCTTGTTCAAGT 18922 |||| | ||||||||||| ||||| ||||| | || || || || | || || | Sbjct 2 CAGGCTTACAGCGCGGAACGTGGAAGGGTGAGCTGGTTCGTAGTGTGTTTCTTTTTAAAT 61 Query 18923 CATTCCCGATCTCTGTCGTGATGCGCCACTGGTCGCGGGCTATGGGTATGCCTTCTGCTG 18982 |||||||||| |||| ||||||||||| ||| || | || | | |||||||||| Sbjct 62 CATTCCCGATAGCTGTAGTGATGCGCCATTGGGCGAGAGCGTTTAACACTCCTTCTGCTG 121 Query 18983 GTGGGCGGGCTGCTTATATCGCGACGTTTATCGCCAGCACGACAATACTTGGCGCGCTTT 19042 | || || || || ||| | || ||||| | || ||||| || | ||||| || | | Sbjct 122 GCGGTCGAGCGGCCTATCTTGCAGCGTTTTTGGCAAGCACTACGGTGCTTGGTGCCATGT 181 Query 19043 CTCAGCAACTAAATGACATAGCATCAGGCCGTAA----TCCGCGG-GATATGGCTGGTGA 19097 | |||||| |||| || || ||||| | || |||||| | | | ||| || Sbjct 182 CCCAGCAAATAAACGATATGCTTTCAGG--GAAAGACCTCCGCGAAGCTTT---TGGCGA 236 Query 19098 AGATGCTGCTAAATTCTGGCTTGGCGCATTGCTGAAAGGCGGTGGTCTCGGACTGTACGG 19157 | || || | |||||| || || || || ||||| |||||| | || || || || Sbjct 237 TAAAGCCCCTCAGTTCTGGATTAATGCGTTACTTAAAGGTGGTGGTATGGGGCTTTATGG 296 Query 19158 TGATTTTTTGCTATCTGACCACACCAGGTACGGAAGCGGAGCGCTGGCTTCAATGCTAGG 19217 || || || | || || || ||| | ||||| || ||| |||| |||||||| || Sbjct 297 CGACTTCTTCTTTTCAGATCATACCCGCTACGGCTCCGACGCGATGGCGTCAATGCTTGG 356 Query 19218 GCCGGTGGCTGGTCTCGTAGATGATGTCATTAAGATCGGGCAGGGCATCCCGCTGAATGC 19277 || || ||||| | | | ||||| |||| | | ||||||||||| |||||||| Sbjct 357 CCCCGTTGCTGGGTTAATCGGTGATGCGGTTAAACTTGCCCAGGGCATCCCCCTGAATGC 416 Query 19278 GGTAGAAGGTAAGAGCGAGCAAACTGGTGGTGATCTGGTTAAGCTTGGAAAAGGTCTGAC 19337 || || || || |||||||| || || ||| | ||||| | | ||||| |||| Sbjct 417 CGTTGAGGGAAAACCAGAGCAAACAGGCGGCGATGTCGTTAAATTCGTCAAAGGGCTGAT 476 Query 19338 ACCTGGTGCCAACATCTGGTACCTGAAGGCTGCGCTTGATCATATGATCTTTAACCAGAT 19397 ||| || ||| | ||||| || || || | ||||||||| | ||||| ||| | Sbjct 477 ACCCGGGCAAAACCTTTGGTATACAAAAGCAGCATTGGATCATATGTTTTTTAATCAGTT 536 Query 19398 GCAGGAGTATTTTTCCCCTGGCTATCTGCGCAAGATGGAGCAGCGTTCGAAGAAAGAATT 19457 |||||| || ||||| || || |||||| | ||||||| | || || ||||| Sbjct 537 GCAGGAATACTTTTCGCCGGGTTATCTGAACCGAATGGAGCGCAGATCCCAGCGTGAATT 596 Query 19458 TAACCAGACATACTGGTGGCGACCTCAGGATGTTACTCCACAATAA 19503 ||| || || || |||||||| || || || | || ||||||||| Sbjct 597 TAATCAAACCTATTGGTGGCGTCCGCAAGACGCTATGCCACAATAA 642 >seq2782 Length=6651 Score = 167 bits (184), Expect = 6e-37 Identities = 420/633 (66%), Gaps = 4/633 (1%) Strand=Plus/Minus Query 27591 TAACCCGGCTTCTGACATAAAACCTTCATCAATAGCCATGTTCAAGCCGCGCGACCGCAC 27650 ||| || ||| || || ||| | || ||||| || | || |||| || ||| | | Sbjct 920 TAATCCCGCTGAGGAAATTAAAGCATCCTCAATCGCAACTTTTCAGCCACGAGACAGAGC 861 Query 27651 GCTGCAACCTGAAG-AGATCGGCGTATTCTTCCGGGCGCTGGATAATGTCGGGGCGATGG 27709 | || |||| |||| |||| | ||||| |||||| |||||||| || || || | Sbjct 860 GTTG-AACCCGAAGGAGATAGCGGTATTTTTCCGGTATCTGGATAAAGTTGGTGCCCTTC 802 Query 27710 CCACAATGAAACTGGCATTAAAACTGGTGCTGCTCACCCTGGTTCGCAAAAGCGAGTTCA 27769 | ||||||||||||||||| ||||||||||||||| ||||| || ||||| || | | Sbjct 801 CGACAATGAAACTGGCATTGCGACTGGTGCTGCTCACACTGGTGCGTAAAAGTGAACTGA 742 Query 27770 CCCACGCCACATGGTCAGAAGTCGATTTCAAAAAATGGACATGGACGATACCGGCGGAAC 27829 | || |||||| || |||||||| | | ||| |||||| || | Sbjct 741 TTAAAGCGACATGGGATGAGGTCGATTTTGAGGGGGCGTGCTGGGTGATACCCGCCGGCA 682 Query 27830 GAATGAAGGGAAGCCGAGCACACGTTATCTATCTGCCAAAGCAGGCGCAGGATCTGATGA 27889 | ||||| | | | || |||||||| || || ||| || ||||||| |||| | |||| Sbjct 681 GGATGAAAGCAGGGCGGGCACACGTGATTTACCTGTCAGAGCAGGCTTTGGATATTATGA 622 Query 27890 TTGGCCTGCAGATGTGCGCTGGTGGAAGTGATTACCTTTTGCCCGGGCGCTATTCGGTTA 27949 || | | ||||| ||||| || |||| || | || ||| || | Sbjct 621 CGGGATTAAAAATGTGTGCTGGAGGTTCAGATTTTATTCTACCATCGCGTTACGACACGA 562 Query 27950 GCAAGCCGTTATCCAATGGCGCACTGAACAGGCTGATCAATACCACCGTCGAAGCGGTGA 28009 || || |||||| ||| | ||||||||||| | | | | || ||| || | Sbjct 561 CTAAATGTTTGTCCAATTCAGCATTAAACAGGCTGATTGACAGCGCAGTTGAACTGGCAA 502 Query 28010 ACGAGGCTGGCGGGAATCTGGATGATTTCTCTGTGCATGATCTTCGCCGCACAGCCAGCA 28069 | | | || | | ||||| |||| ||||| || ||||| | | || || | Sbjct 501 ATAAAGAAGGGGAAAGACTGGAGCATTTTTCTGTTCACGATCTCAGGAGAACCGCATCGA 442 Query 28070 CGCTGTTGCATGAGGCTGGTTAT-CCATCTGACTGGATAGAAAAGGCGCTGGCGCATGAG 28128 | |||| |||||||| |||| | || | |||||||| |||||| | ||||| | Sbjct 441 CATTGTTACATGAGGCAGGTTTTAACAGC-GACTGGATTGAAAAGTGTTTAGCGCACGGA 383 Query 28129 CAAAAGGGAGTGCGTGCGGTATACAACAAAGCGGAGTATGCGCGGCAGCGCGCCTACATG 28188 || || || ||| | || || ||||| ||||| || |||||| |||||| | ||| Sbjct 382 CAGAAAGGTGTGAGGGCCGTTTACAATAAAGCTGAATATGCGGCCCAGCGCAGGAATATG 323 Query 28189 TTGCAGCAGTGGGCTGATATGGTTGATTCCTGG 28221 | || ||||||||| | ||||||||| |||| Sbjct 322 CTCCAACAGTGGGCTAACATGGTTGATGACTGG 290 Score = 138 bits (152), Expect = 3e-28 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27049 ACTGATACCAAACTAAAAAACCTCAAGCCGCAGGACAAACTGTATAAGGTTTCGGATCGT 27108 || || || ||||||||||| || ||||| |||||||| || |||||| | |||||| Sbjct 1462 ACAGACACTAAACTAAAAAATCTTAAGCCTTCAGACAAACTCTACAAGGTTACAGATCGT 1403 Query 27109 GACGGGCTGTATGTTGCGGTGCTTACTTCCGGCTCTGTCTCTTTCCGGTACGACTACCGC 27168 || |||||||| || ||||| |||| | || ||| || ||||| || |||||| | Sbjct 1402 GATGGGCTGTACGTGGCGGTTCTTAAGACGGGTGTTGTATCATTCCGCTATGACTACAGG 1343 Query 27169 ATTAACGGGCGCCGGGAAACGCTGGTCATCGGTCAGTACGGTCGTGACGGTATCAGCCTG 27228 || |||||| | | |||||||| ||||||| ||||||| ||| |||||| | ||| Sbjct 1342 ATAAACGGGAGAAGAGAAACGCTAACCATCGGTAAGTACGGGCGTAGCGGTATTAACCTA 1283 Query 27229 GCAGAAGCACG 27239 || |||||||| Sbjct 1282 GCCGAAGCACG 1272 >seq2416 Length=3977 Score = 127 bits (140), Expect = 5e-25 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 24602 TCCATTTGGCATTGACGAAAAAGCTGAACGTGACGGCTACGCAGAATGCGATAACGTTCG 24661 ||||||||||||| | | |||||||||||| || ||||||||||| |||| || |||| Sbjct 3759 TCCATTTGGCATTAGCTATAAAGCTGAACGTCACCGCTACGCAGAAGGCGACAAGATTCG 3818 Query 24662 ATATCGCCTGGCTAAAGCCTATCATGCTGAACATAACGCCGAAGCAGAGCCAGTGGATGG 24721 ||| || || | | ||||||| ||||||| | ||||||| |||||| || | Sbjct 3819 ATAAAGCTTGATTCAGCCCTATCAGACTGAACAGCGCAGCGAAGCATGACCAGTGAATTG 3878 Query 24722 CAGTATTCAGCACACCAACAGAAATATAACGACCGAATAGCTTTAACA 24769 | || |||| ||||||||||||| ||| |||| |||||||| |||| Sbjct 3879 CGGTGTTCAAAACACCAACAGAAACATATCGACTAAATAGCTTGAACA 3926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123661372801536