Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq88 118 9e-22 >seq88 Length=1565181 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29880 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 29939 ||| |||| ||| ||||| | || |||||| ||||||||| ||||| |||||||| || Sbjct 328619 GTGTGCCAGCATATACGTCAACAGTGAGTAGGAGGCGATGTTGAAGGGCACCCCGAGGCC 328678 Query 29940 CATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 29999 |||||| | | ||||| || ||||| |||||||||||||| ||| | ||||| Sbjct 328679 CATGTCTGCGCTTCGTTGGTACAGGTGACAGGAGAGCTCTCCGTCAGCAACGAAGAACTG 328738 Query 30000 ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 30059 | | |||||| || ||||||||||| | | |||| |||||||||||||| Sbjct 328739 GACGAGGCAGTGGCAGGGTGGAAGAGCCATTTTGGGAATGTCTGCTGGGTTCCAGGCGCA 328798 Query 30060 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCT 30092 | ||||| | | ||| || || |||| ||| Sbjct 328799 GATTATGATCCTTCGGTCGTCCGGATTGTGCCT 328831 Score = 118 bits (130), Expect = 9e-22 Identities = 177/250 (71%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 30138 GTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACAC 30197 ||||||||| ||||| ||||||| || || | || |||||||| ||||| || | Sbjct 328971 GTAGTCTGCATGCATGTTAGTGTACTTGGCACCAGAGTGTCTCCACTGAAACCCATAGAT 329030 Query 30198 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGA 30257 || || || || ||||| || | || || |||||| ||||| | || | || Sbjct 329031 TGGCCCTAGATCACCCTCCTCACGGTCCTTGAAGCCGTAAGCATCCAAGTATTCACGTGA 329090 Query 30258 ACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | ||||||||||||||| || || || || || | || | || ||||||||| || Sbjct 329091 GCTGTTGGCGTCCCAGATTTTCACTCCTCGCTTTGATAATTCGTGGGCGTTTGTGGATCC 329150 Query 30318 TCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 |||| |||||| || || || ||||| || ||||||| |||||| || || ||||| Sbjct 329151 ACTGATGAACCAGAGGAGTTCTTCCACTACTCCCTTCCAGAAGACCGATTTCGTGGTGAG 329210 Query 30378 GAG-GGGAAA 30386 || |||||| Sbjct 329211 AAGTGGGAAA 329220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408597839252864