Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq3282 165 3e-36 seq2452 107 6e-19 seq2650 82.4 2e-11 >seq3282 Length=7904 Score = 165 bits (182), Expect = 3e-36 Identities = 235/330 (71%), Gaps = 3/330 (1%) Strand=Plus/Minus Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003 ||| | ||||||||||| ||| || || ||||| | ||| ||||| || || || Sbjct 7596 GCCCAGCATCTGCATGGAGCCGGAAATGTCTACCACTACTTCCGTGGTATAACGATCCTG 7537 Query 26004 GCCGTCCTTTTCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACC 26060 ||| || ||| || || || || |||||| || |||| || |||||||| || Sbjct 7536 CCCGCTCTGATCCTGCCATTTACGCGTGCGCAGTTGACCTTCAACATACACCTGTGAGCC 7477 Query 26061 TTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCA 26120 ||| |||||| || || || | || || | ||| || ||||| |||||| ||||| Sbjct 7476 TTTGCGCAGGTATTCTCCAGCCACTTCAGCCAGCTTTCCGTACAGCGTGACGCGGTGCCA 7417 Query 26121 TTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTAC 26180 |||||| ||||||| || ||||||||||| ||| |||| | ||||| || || | Sbjct 7416 TTCTGTGCGCTCTTTCTGCTCACCGGTCTGCTTGTCGCGCCAGGTATCTGACGTGGCCAG 7357 Query 26181 GGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAG 26240 || | ||| || || || || || || |||| ||||||| || || || | |||||| Sbjct 7356 AGTCAGGTTAGCAACGGCACCACCGTTCGGCAGATAACGGACTTCCGGGTCTTGCCCCAG 7297 Query 26241 GTTACCGACAAGGATTACTTTATTTACGCC 26270 || |||||||| || |||||||| ||||| Sbjct 7296 ATTCCCGACAAGAATCACTTTATTAACGCC 7267 >seq2452 Length=2364 Score = 107 bits (118), Expect = 6e-19 Identities = 222/330 (67%), Gaps = 3/330 (1%) Strand=Plus/Minus Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003 ||| | ||||||||| | |||||||| | ||| || | ||| || ||||| | || Sbjct 2198 GCCAAGCATCTGCATTGATCCGCCAATATCGACAACTACTTCCGTTGTGTATCTGTCTTG 2139 Query 26004 GCCGTCCTTTTC---CCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACC 26060 || || || |||||| | || || ||| ||||| || || ||||| ||||| Sbjct 2138 CCCTGACTGGTCTTGCCACTTCCTTGTGCGCAATTGGCCCTCGATATATACCTGCGAACC 2079 Query 26061 TTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCA 26120 || || || || || || | ||| || | ||| || ||||| |||||||||||| Sbjct 2078 CTTGCGTAGATATTCACCAGCCACCTCTGCCAACTTTCCGTACAGCGTGACGCGATGCCA 2019 Query 26121 TTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTAC 26180 ||| || || |||| || || |||||||| || |||| || || || ||||| Sbjct 2018 TTCCGTGCGCTCCTTCTGCTCTCCAGTCTGCTTGTCTCTCCATGAATCAGAAGTGGCTAC 1959 Query 26181 GGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAG 26240 || | ||| || ||||| | || | || |||| || | | || || | ||| || Sbjct 1958 AGTCAGGTTTGCCACTGCCCATCCGCTCGGTGTGTAGCGCACTTTGGGGTCTTGCCCGAG 1899 Query 26241 GTTACCGACAAGGATTACTTTATTTACGCC 26270 || || || || || ||||| |||||||| Sbjct 1898 GTGTCCCACGAGAATCACTTTGTTTACGCC 1869 >seq2650 Length=2993 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 4189 GCTACTGGTCATATTGGCCTGAAAATGAATACGTCGGCGATCTGCTGGCGCTGTGGGATA 4248 |||||||||| || ||||||| ||| ||||||||||||||| || || ||||||||| Sbjct 224 GCTACTGGTCGTACTGGCCTGTAAACGAATACGTCGGCGATTTGATGCGGCTGTGGGAGC 283 Query 4249 TCGACGATTATACATTCCAGAGCCAATACATGCAG 4283 ||||| ||||| ||| | || ||||||||| Sbjct 284 GTGACGAATATACGTTCATGTCTCAGTACATGCAG 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159810069394688