Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq2639 327 4e-85 seq3673 316 6e-82 seq3629 217 5e-52 seq3480 190 6e-44 seq2935 158 4e-34 seq2992 102 3e-17 seq3134 86.0 2e-12 >seq2639 Length=1078 Score = 327 bits (362), Expect = 4e-85 Identities = 409/552 (74%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 45109 GAATTGAACCTCACCAAAGAACAGCATGAGTGGCTGAATGGCTGGCTTGAACTGTGGGGC 45168 ||| | || ||||| | || |||||| ||| | | || ||| | ||| | |||||| Sbjct 429 GAACTTAAACTCACGGATGACCAGCATCGATGGATTGAAGGGTGGTTAGAATTATGGGGC 488 Query 45169 GCATGGGTTTATTCAGGTCGTCTGGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATG 45228 || |||||||||||||| | || || ||||| ||||||||||| ||| |||||||| Sbjct 489 GCGTGGGTTTATTCAGGGAGGCTAGAGAAGCGGCAAAGCAGCGTAATTGCGCAGTTCATG 548 Query 45229 GAGAGGGTAGAACCATCAAGAGTGATGACAAGGCCAATGTGCAATGATGATGACGGAATG 45288 ||||| ||||| ||| || ||||||| ||||| |||||||| ||||||||||| ||| Sbjct 549 GAGAGAGTAGAGCCAGGCAGGGTGATGAGTAGGCCCATGTGCAACGATGATGACGGGATG 608 Query 45289 TTGATTTCTCAGGTCGTAGATTCCGTCATGTACATTGACAAGAAAGCCTTTGGCATCCTC 45348 ||||||||||||||||| |||||||||||| |||||||| | | | || || || Sbjct 609 TTGATTTCTCAGGTCGTCGATTCCGTCATGCGCATTGACACAAGGTCGCTCGGTATTCTT 668 Query 45349 CTCAGCTACTACGCTCATGGCTCATCTAAGCGAGCAATTGCATCCTACTATCACGCGACT 45408 ||||||||||||||||| || ||||||||||||||||||||||| ||||||||| | Sbjct 669 CTCAGCTACTACGCTCACGGATCATCTAAGCGAGCAATTGCATCGTACTATCACAAAGCC 728 Query 45409 GCAAAGCCACGCAAGAT-GCGTGGACGTGGT--GGTGAGGGATGGAGAAAACCTTCATTG 45465 |||| ||||||||| || | || | | | |||||||| ||| | || || ||| | Sbjct 729 GCAAGGCCACGCAAAATCGACAGGGGGAGATTGGGTGAGGGGTGGCGTAAGCCGTCAGAG 788 Query 45466 GCAAC-CTGTAGAAACGAAATTGACGACATCCTCAAAGCGTCATTATTTGTATTATATCA 45524 | | | ||| || || || ||| | || || | || | | | | | | || Sbjct 789 GAAGCGCTG-AGGAAAGAGATTTCACAGATACTGGAGGCTACGCTGTATATTCTCTACAC 847 Query 45525 GCCAATGCAAAATGCTTTCAAAATGCGTAAACGTGTTGAGAAAGTTAAGCATGTTGCTGT 45584 || ||| |||||| || |||| |||||| |||| | |||| |||| |||||||| | Sbjct 848 TCCGCTGCGAAATGCGTTTAAAAGTCGTAAAAGTGTGGCGAAAATTAAACATGTTGC-AT 906 Query 45585 TAAAAGCCTTGACATGCAATTAGCCATTTAGCCATAATTGGAGGGTAAGCTGCCGTTAGT 45644 ||| | |||||||| | ||| ||||||| ||||||| | |||||||||||| || Sbjct 907 GAAAGGACTTGACAT-CTTTTACCCATTTACCCATAATCATA-TCTAAGCTGCCGTTCGT 964 Query 45645 GACTCTTAAGTT 45656 || ||||||||| Sbjct 965 GAGTCTTAAGTT 976 >seq3673 Length=1591 Score = 316 bits (350), Expect = 6e-82 Identities = 286/360 (79%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 47759 ATCGCAACTCGGCGCGTCTGGAGTACAAGCCTATGACCGATGCCATCAAGCATGAGCGTG 47818 |||| || | || || || || |||||||| ||||||||||| |||||||||||||| | Sbjct 695 ATCGTAATACCGCTCGGCTCGAATACAAGCCAATGACCGATGCAATCAAGCATGAGCGCG 636 Query 47819 AGGCGCAGGGTAAGCAGATCGCCCCGCATCACTTCAGCAACGAAGCTGACCTGATTAATC 47878 |||| ||||| ||| ||| || ||||||||||| ||||||||||||||||||||||| | Sbjct 635 AGGCACAGGGCAAGACGATTGCGCCGCATCACTTTAGCAACGAAGCTGACCTGATTAACC 576 Query 47879 GACTGGCGCTGGGCATGACGGCGGCCAAGTTCCGCGTGCATCACGAAATCGGGAAGAAAG 47938 | | || ||| ||||||||||||||||||||||| ||||||| ||||| ||||||| Sbjct 575 GCATCGCTTTGGATATGACGGCGGCCAAGTTCCGCGTCTATCACGATATCGGCAAGAAAG 516 Query 47939 AGCCGATCCGCGATTACCTGACGCCGGAACAAATTCACTGCATCACCGAGCTACAGCGCG 47998 || | ||||| || || |||||||| || || || |||||||| ||||| || || |||| Sbjct 515 AGTCTATCCGTGACTATCTGACGCCAGAGCAGATCCACTGCATTACCGAACTGCAACGCG 456 Query 47999 CCAACACGGTATTCATCAGCATGGGGTGGGACTTCGAACAACGCAAAGAAGTGCTGCGCG 48058 |||| ||||||||||| ||||||| ||||||||||| |||||||| | |||| | Sbjct 455 CCAATACGGTATTCATTGGCATGGGCTGGGACTTCGAGCAACGCAAGGCTACGCTGATGG 396 Query 48059 GCATGTTCGAGCGTAATCACCGCCAGCCACTTATCGAAGAGCAGCACCGCTTGGCCGCAT 48118 | || ||| || || |||||||| || || ||||||||| || | |||| |||| Sbjct 395 GGATATTCACCAAAAACCATCGCCAGCCGCTGATTGAAGAGCAGTACAGGCTGGCAGCAT 336 >seq3629 Length=1790 Score = 217 bits (240), Expect = 5e-52 Identities = 224/293 (76%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 31647 ACCTGAGCTGCGTCCATTCCCTTCTTGTTTTCTTCTTCTCGCGCTATAGCGCTTGCTGAA 31706 ||||||| | | ||||| || |||||| |||||||||| | || || || |||||||| Sbjct 48 ACCTGAGATCCATCCATGCCTTTCTTGCTTTCTTCTTCCCTTGCCATTGCTGTTGCTGAA 107 Query 31707 TGGCTATTTTCACCATCTGTAATGGTCGCTGTGGCCTTGACGTAATAACGGTCGCCAATC 31766 || || |||| ||||| ||||| || || ||||| ||||||||||| | | |||||| Sbjct 108 TGAGTACTTTCCCCATCGGTAATAGTTGCCGTGGCTTTGACGTAATATCTATTCCCAATC 167 Query 31767 AGCACGATTTCATCACTGATAGACAGGAACAGGCCTTTCAGTAGTGGCTTAACACCCTCC 31826 | |||| ||||||| || || || || || ||||||| || ||||| || |||||| Sbjct 168 ATTACGACATCATCACATATCGAAAGAAATAGACCTTTCAATAAAGGCTTTACTCCCTCC 227 Query 31827 AGAATGTCTTCACAGCTTCTGTATTTGTATTTACCAAACGAGTTGTACTGATTCTTTGGT 31886 | || ||||| || ||||||||||| ||||||||||| ||||| | || || ||||| Sbjct 228 AATATATCTTCGCAACTTCTGTATTTATATTTACCAAATGAGTTAAATTGGTTTTTTGGG 287 Query 31887 GCGTTCAGGTGCTCCTGAATTTCAGCAAGTCTTGCGTAAAACTCTTTGCTCAT 31939 ||||| |||| | ||| ||||| || || || |||||| ||||| ||||| Sbjct 288 GCGTTAAGGTTTTTCTGGATTTCTGCTAGCCTCAGGTAAAATTCTTTACTCAT 340 >seq3480 Length=19940 Score = 190 bits (210), Expect = 6e-44 Identities = 204/270 (76%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 47626 GCACTGCTAAACGAACAGCAAACCACGCTGTTGATCACCTACATGCGAAACAATGAAGTT 47685 ||| | || ||||| |||||||| || || || || ||||||||||| |||||||| | | Sbjct 19511 GCATTTCTCAACGAGCAGCAAACTACACTCTTAATTACCTACATGCGTAACAATGATGCT 19452 Query 47686 GTGCGTGAATTCAAAAAGCGCTTGGTATATGAATTCTTCACTATGCGCAGCGCGCTGGCG 47745 || |||| |||||| ||| |||| | || |||||| |||||||| || | ||| Sbjct 19451 GTTCGTGTATTCAAGAAGAAGCTGGTTTCCGAGTTCTTCCGTATGCGCAAGGCATTAGCG 19392 Query 47746 AAGAAGAAGATGGATCGCAACTCGGCGCGTCTGGAGTACAAGCCTATGACCGATGCCATC 47805 ||||||||||||||||| | || || | |||||| || ||||||||||||||| Sbjct 19391 GGCAAGAAGATGGATCGCAATACCGCCCGGATTGAGTACCGCCCAATGACCGATGCCATC 19332 Query 47806 AAGCATGAGCGTGAGGCGCAGGGTAAGCAGATCGCCCCGCATCACTTCAGCAACGAAGCT 47865 ||||| || |||||||||||||| || ||||| || || ||||||||||||||||| Sbjct 19331 AAGCACGAACGTGAGGCGCAGGGGAAAACCATCGCGCCACACCACTTCAGCAACGAAGCC 19272 Query 47866 GACCTGATTAATCGACTGGCGCTGGGCATG 47895 || | || || || | || || || ||| Sbjct 19271 GATTTAATAAACCGCATTGCACTTGGTATG 19242 >seq2935 Length=3234 Score = 158 bits (174), Expect = 4e-34 Identities = 737/1151 (64%), Gaps = 33/1151 (3%) Strand=Plus/Plus Query 39433 CGCGATGGTGAGTTGTTGCAGGTCAAGAGAATCAGCACCGAACGTCCGGACGGGAAGAAA 39492 ||||| ||||||||| || ||||| | | | | || |||| ||||| || ||| Sbjct 1636 CGCGACGGTGAGTTGAAACAAATCAAGCGGTTGGGGATTGAGCGTCATGACGGTAAAAAA 1695 Query 39493 GTCATCATGGCAGAAGGTGACTGTGAACCCTGTCTGTTCGGATGGCAGGCTCTCGATGCT 39552 |||||||||| || || ||||||||||||||||| || |||||||| || | | Sbjct 1696 ATCATCATGGCGGAGTCCGATTGTGAACCCTGTCTGTTTGGCTGGCAGGCCATCAACCCC 1755 Query 39553 GGCGTGAGGGCT---GTTGTACTTTGCGAAGGCGAAATTGATTGCATGAGCTATGCGCAA 39609 | | | | || || |||| |||||||||||||| |||||| | || Sbjct 1756 AAAGAGCGCAATCTGGTGGTGATTTGTGAAGGCGAAATTGACGCGATGAGCATTCACCAG 1815 Query 39610 TACGGAATTCCGGCGCTATCTGTCCCGTTCGGTGGCGGGAAAGGCGCTAAACAACAGTGG 39669 ||||| | ||||| || || || || ||||||||||| | || || || || |||||| Sbjct 1816 TACGGCCTCCCGGCACTGTCGGTTCCCTTCGGTGGCGGAACGGGGGCCAAGCAGCAGTGG 1875 Query 39670 ATTGAGTTTGAATACCATAACCTAGACAGGTTT-GAGGAAATATTCATTTCGATGGATGT 39728 ||||||| ||| ||| | || || | || |||| || || |||||| | | ||||| | Sbjct 1876 ATTGAGTATGAGTACGAAAATCT-GTCACGTTTCGAAGAGATATTCCTGTGCATGGACAT 1934 Query 39729 TGATGATGTAGGCCGCGAAGCTGCAAGGGAAATCGCAAGCCGACTGGGTGAACATCGCTG 39788 |||| | || | || || |||||| || | ||| ||||| ||||| || Sbjct 1935 GGATGCCGCCGGGCAATCCGCCGCCCAGGAAATTGCTACCCGGCTGGGCATCCATCGTTG 1994 Query 39789 TCGTCTGGTTACACTGCCACACAAAGATATCAACGAATGCCTGATGAACGGCGTCGCCGA 39848 | | || | ||| || ||||| || |||||||||||| | || | | Sbjct 1995 CAGCTTTGTGAAACTCCCTCACAAGGACGCTAACGAATGCCTGGTCAATAATATTTCAAT 2054 Query 39849 GGATGAAATCTGGCAGTACATTGGCACGGCTTCATA---CTTCGACCCGGAAGAACTCTA 39905 ||| | | | | || | | || || || | ||||||||| ||||||| | Sbjct 2055 GGAGCAGTTTCGACGGTTCTT---CATGGACGCAGAGACCTTCGACCCCACAGAACTCAA 2111 Query 39906 CAGCGCTCGTGAGTTTTACCAGGATACAGTCAATGC-----TTTCTACGGCAAACAGCAG 39960 | || | || || ||||| |||| |||| ||| | | | | | Sbjct 2112 ACGGGCGGGCGAATTCCGTCAGGA---AGTCCATGCGGCTTTTTTTTCACCCGCTCCCGG 2168 Query 39961 TATCTGTTTAACCCACCGTGGGAAACGCTGGCTTACAACTTCCAGTTCCGTGAGGC-GGA 40019 || |||| | | |||||| ||||||| | || || ||| | | || || || Sbjct 2169 TA--TGTTCACCAGTCCGTGGCCCACGCTGGAGCAGAA-TTTCAGATTCAGGACGCACGA 2225 Query 40020 GTTAACGCTTGTTAATGGCGTGAACGGTCACGGAAAAACGGAGGTTGTCGGGCATATGGC 40079 | || || || || ||||| ||||||||||| ||| || || |||| |||||| |||| Sbjct 2226 ACTGACCCTGGTCAACGGCGTTAACGGTCACGGCAAATCGCAGTTTGTGGGGCATCTGGC 2285 Query 40080 ACTTGAGGCCATGAGGCAGGGGGTAAAAACATGCGTCGCATCGCTTGAACTGAAGCCAGG 40139 |||||||| | | |||||||| | ||| |||| || | || || ||| | Sbjct 2286 GCTTGAGGCGACGTACCAGGGGGTGTCTGCCTGCATCGCCTCCATGGAGCTACGGCCCGC 2345 Query 40140 GATTCTGCTTAAACGCCTGACCCGGCAGTCTACATGT-TGCAAAATGCCGCCAGTTCTGG 40198 || || || ||||| ||| || || | |||| | |||||| || || Sbjct 2346 TATCCTACTGAAACGGATGATTCGACAAGCCGTATGTACGGGGAATGCC-TCACCGGAGG 2404 Query 40199 AAATCGAATCAGCAT--TTAAGTTTTACGATGACCGGCTCTGGTTATTTGGCCTGACAGG 40256 | | || | | || | | || ||||| |||| | ||| | || | ||||||| Sbjct 2405 ATGTAGA--CCGGATGATGGACTTGCTCGATGCCCGGATGTGGCTGTTCAACGTGACAGG 2462 Query 40257 TACAGCCAAGGCTGAACGCCTGATTGAAATCTTCACATACGC-CAGAAGACGCTACGGCA 40315 || |||||||| || || | | | || | ||| || || ||| ||||| ||| Sbjct 2463 TAAAGCCAAGGGAGAGCGGATTTTGTCCGTGTTTAAATATGCACACAAG-CGCTATGGCG 2521 Query 40316 TCCAGTTATTCATCATCGACAGCCTCATGAAGTGCGGTATTGGCGATGACGATTACAACG 40375 | || | || || | ||| | |||| |||||| | || || |||||||||| Sbjct 2522 TGAAGCTGTTTGTCGTGGACTCGTTGATGATGTGCGGACTCAATGAGGATGATTACAACG 2581 Query 40376 GACAAAAGGCGTTTGTTGACGCGTTGTGCGACTTCAAGAATAAAACAAACTCT-CACATT 40434 | || |||||||| | || ||||| ||||| |||||| | | | | | || | Sbjct 2582 GCCAGAAGGCGTTCATGGAAGCGTTATGCGAGTTCAAG-CTGACTTACCCGGTGCATGTG 2640 Query 40435 ATCCTCGTCACTCACTCCAGAAAGGGAGACAGCGAGGAGAAACCTACCGGAAAGATGGAC 40494 | | || |||||| || | || || || | ||| || ||||| || ||||||||| Sbjct 2641 CTGTTGGTGACTCACCCCCGGAAAGGCGAGAACGAAGAAAAACCGGTGGGCAAGATGGAC 2700 Query 40495 GTAAAAGGCTCAGGAGCGATTACAGACCTGACAGATAACCTGTTTATCATCTGGCGCAAT 40554 || || || |||| || || || || |||| || |||||| | | | | ||||| || Sbjct 2701 GTCAAGGGGACAGGGGCTATCACGGATTTGACCGACAACCTGATCACCGTTTGGCGGAAC 2760 Query 40555 AAAGCTCGCGA 40565 || || || || Sbjct 2761 AAGGCGCGTGA 2771 >seq2992 Length=1942 Score = 102 bits (112), Expect = 3e-17 Identities = 220/329 (67%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 11956 CATTCCACGGCGATACGTTGTACTTGGTGAGCTATAATGGTGAGCCATTCACCCCGATGA 12015 ||||||||||||| | | || | || | | | || || || || | |||||||||| Sbjct 412 CATTCCACGGCGACAATCTCTATCTCGTCAACCACAACGGCGAACCCTATACCCCGATGA 471 Query 12016 AACCTATTGTTGACGGCATGGGGTTGGATTGGGCTTCGCAATTTACCAAGATCAAAAATC 12075 | || ||||| || |||||||| |||||||| ||||| | ||| | ||| || Sbjct 472 AGCCCATTGTAGAAAGCATGGGGATGGATTGGATGGGGCAATATTTAAAGCTTAAACATA 531 Query 12076 GTTTCAAATCATCCGTTGTGGAAATCACAATGGTTGCGGCAGACGGTAAAAACAGGGATA 12135 | || | ||| | | | ||||||| | |||||||| | |||||| || | | | | Sbjct 532 GATTTAGCTCAACTATAGAGGAAATCTCTATGGTTGCCGGAGACGGGAAGCAGCGCAAAA 591 Query 12136 TGTCGTGCCTGGCCCTCCGCAAACTACCAGGCTGGTTGCATACCATTAATGTAGGAAAGG 12195 || ||||| | ||||| || || |||| ||| | || ||||| | | | || | Sbjct 592 TGGTCTGCCTCCCTCTCCGAAAGCTCGCAGGGTGGCTCCAGACCATCAGTCTCAACAAAG 651 Query 12196 TTCGCCCTGAGCTGCGCGAAAAAGTGTCTCGCTATCAGGAAGAGTGTGATGACGTCCTTT 12255 || ||||| | ||||| || ||| |||||| | ||||| || || || || | Sbjct 652 TTAATCCTGAAATCCGCGACAAGGTGATGAAATATCAGAACGAGTGCGACGATGTGCTCT 711 Query 12256 ATCAATATTGGACTAATGGTGAGGTTAAG 12284 | | |||||||||| || || || ||| Sbjct 712 ACGAGTATTGGACTACCGGCGAAGTGAAG 740 >seq3134 Length=1003 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 31545 TGCTGCTGTTTGTGCTCGTCAGTATCCGCGTCTTTGGAGTCGTCGATACCAAACAAACCG 31604 ||||| || |||||||| | |||||| |||||||| | || || || || || | || Sbjct 272 TGCTGATGCTTGTGCTCATTAGTATCTGCGTCTTTTGCATCATCAATGCCGAATAGCCCA 213 Query 31605 TTCAGGCAATATTTGCGAGCGTAAGAGCTTGTAGCGCCAGTTACCTGAGCT-GCGTCCA 31662 || |||||||| || | |||||||||||||| || || || ||||||| | | ||||| Sbjct 212 TTAAGGCAATACTTTCTGGCGTAAGAGCTTGTTGCCCCTGTCACCTGAGGTAGAGTCCA 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157042199822848