Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq3098 167 6e-37 seq2972 141 2e-29 seq3149 82.4 2e-11 seq2992 80.6 7e-11 >seq3098 Length=1355 Score = 167 bits (184), Expect = 6e-37 Identities = 835/1308 (64%), Gaps = 49/1308 (4%) Strand=Plus/Minus Query 32656 CAGGGCTACCCGGTGCCGCTTCTTTACGGCAAGCGCCGGATAGGTGGGGCGATTATCTCC 32715 ||||| | |||||||| | || || ||| || || || ||||| || |||||||| Sbjct 1293 CAGGGTAATCCGGTGCCCATCCTGTATGGCCGTCGTCGAATCGGTGGCGCAATTATCTCT 1234 Query 32716 GCAGGCATTTACGCCGAGGATCAGCAGTAAG--TTAAACCAGATAAC----AGGCCGCCT 32769 || ||||||||||| || |||||||||||| ||| || || | ||||| | Sbjct 1233 GCGGGCATTTACGCAGAAGATCAGCAGTAATCATTATCCCTTCACACTTTTAAGCCGC-T 1175 Query 32770 CCGGGCGGCTTTTTTGTGGGCGC--GA-TATGACAGAAAAAGCGATTCATGGCGCAAAAG 32826 | |||| |||||| || | || ||| | | | | |||||||| |||| Sbjct 1174 CATAGCGGTTTTTTTTTGTTTTCTGGAGTATCCATGCAGA--CAATTCATGGTCGTAAAG 1117 Query 32827 GCGGTGGCGGCA--GCCAGCACACGCCGAAAGAG---CAGGACGACAACCTGCTTTCCGT 32881 | || |||||| ||| | |||| || ||| | ||| || | | | | ||| Sbjct 1116 GTGGCAGCGGCAATGCCCGGACAC--CGGTTGAGTCGCCGGATTCCATTCAG-TCTACGT 1060 Query 32882 CGCCAAAGCCAAAGTGCTGGTGGCGCTGGGCGAAGGGGAGTTCGACGGCCAGCTTGATGG 32941 | | | || ||| | ||| |||||||||| || || ||||| |||| ||| ||||| Sbjct 1059 C--CTACGCAAAAATCCTGTTGGCGCTGGGGGAGGGCGAGTTTAGCGGCGGGCTGGATGG 1002 Query 32942 CAAATCCATATTCCTGGACGGCACGCCGCTGGTGAACGCCGACGGGAGCGAGAATTTTCC 33001 || | || ||||||| |||||| | | ||| | || | | || ||| | Sbjct 1001 CACCCGTGTTTTTTTGGACGGAACGCCGATCACTGATGCCAATGGTAATGCTAACTTTTC 942 Query 33002 CGGCGTGAAATGGGAGTTTCGCCCCGGCACACAGGCGCAGGAATACATTCAGGGCATTCC 33061 ||||||| |||||||||||| ||||||| | | || ||||| | || | || Sbjct 941 AGGCGTGACGTGGGAGTTTCGCTCCGGCACGCCCGATCAATCCTACATCCCCGGTTTCCC 882 Query 33062 CGGTGCTGAAAACGAATTCCCGCTGACGAATATGCAAATCACCACGGAAAAGGGCTGGAC 33121 ||| | ||| || ||| | | | | | | || || | | | || | ||| Sbjct 881 CGGCGTTGAGAATGAAATTACTGTCAGCACAGAGTTAACCAGCCAG--ACAGCG-TGGGT 825 Query 33122 GCGC-ACCTTT-GACGACGCCACGCTCTCCGCCGTTCGCCTGCGCATCAAGTGGCCGCAG 33179 |||| |||| || || | || | ||||| || || |||||| | ||| | | Sbjct 824 GCGCTACCTGCCGAATACCCAAC--TATCCGCTGTGCGTCTGCGCTTTTCATGGTCTGCG 767 Query 33180 CTCTTTGAGCAGAAA---GATAACGGCGACATGGTGGGCTACACGC-TGGAATACGTGGT 33235 ||| |||| || |||||||| || | ||||| || ||| | || || | | Sbjct 766 CTCC---AGCAACAACTGGATAACGGTGATGTAGTGGGTTAT-CGCATTGAGTATGCCAT 711 Query 33236 TGAAATGCAGGTTGACGGCGGGAGCTGGCAGCAGGTGCTGAAAACGGCGGTATCCGGCAA 33295 ||| || ||||| || |||| ||| | |||||||||| ||||| |||||| Sbjct 710 TGATGTGGCCCCGGACGGTGGCAGCTATCAGGAACTGCTGAAAACAGCGGTCGACGGCAA 651 Query 33296 AACCACCAGCGGCTACGAGCGGAGCCACCGCATTGATTTACCGGCCGGTAAAACG---TG 33352 || || | || ||||| || || |||||||| ||||| | | ||| || Sbjct 650 GACTACGACGAAATATGAGCGCAGTCATCGCATTGACTTACCCAATGCAACAACCGGCTG 591 Query 33353 GAACCTTCGCCTGCGCAGGCTCACCCCGAACGCGAACAGCGCACGCATCGGCGACACCAT 33412 | | | ||| |||| | | || ||||| | | ||| ||||| | ||| | || Sbjct 590 GCAAATCCGCGTGCGTCGTATTACGCCGAATTCAACGAGCAACCGCATTGCCGATAAAAT 531 Query 33413 GATGCTGGAAAGCTACACCACCATTATTGACGCGAAGCTGCGCTATCCGAACACCGCCTT 33472 | | | || | ||| || ||||| ||||| |||| || ||| | |||||| | Sbjct 530 GGTTATTGATGCCATCACGGAAATCATTGATGCGAAATTGCGTTACCCGGAAACCGCCCT 471 Query 33473 ACTCTACATGGAATTTGATTCGAGCCAGTTTAACGGCTCTATTCCGCAAATCTCCTGCGA 33532 || | | | |||||| ||| ||||| | ||| ||| || ||||| || Sbjct 470 GCTGTTTGTCCAGTTTGATGCGAAGCAGTTCCAGAA---TATCCCGGTTATTTCCTGTGA 414 Query 33533 GCCGCGCGGGCGTGTCATTCGCGTTCCTGCGAACTATGACCCCGACACCCGCAGCTATAC 33592 |||| ||||| | || |||||||| | || ||||| || | |||| | ||| Sbjct 413 GCCGGATGGGCGCATTATCCGCGTTCCCTCAAATTATGATCCGGTAGCCCGTACCTACGG 354 Query 33593 CGGCACCTGGGATGGCACGTTTAAATGGGCGTGGACGGATAACCCGGCCTGGGTGTTTTA 33652 ||| | ||||| ||||| ||||||||||||| | | |||||||||||| | | || Sbjct 353 CGGGGCATGGGACGGCACCTTTAAATGGGCGTTCTCCAACAACCCGGCCTGGATTTACTA 294 Query 33653 CGACCTGGTGATCACTGATCGCTTCGGACTCGGCGACCGGCTGGACGCCGATAA------ 33706 |||| | ||||| |||||||| || || ||| |||| | | || || || Sbjct 293 CGACATCCAGATCAGCGATCGCTTTGGTCTTGGCAACCGCATCAAGGCTGAAAATCTCTC 234 Query 33707 CGTGGACAAATGGGCGCTCTACCAGGTGGCGCAATACTGCGATCAGATGGTGCCGGACGG 33766 || || ||| |||| |||||| | ||||| || ||||| ||| | || || || || Sbjct 233 GGTTTCGAAGTGGACGCTGTACCAGATCGCGCAGTATTGCGACCAGTTAGTACCTGATGG 174 Query 33767 CAGGGGCGGCGACGGCAAAGAGCCACGCTATATGTGCAACGTCTACGTGCAGAGCCGGGC 33826 | | ||||| ||||||| |||||||| | | ||||| | || || | ||| | || Sbjct 173 CCGTGGCGGTGACGGCACCGAGCCACGTTTTTTGTGCGATGTGTATATCCAGTCGCAGGA 114 Query 33827 CGACGCATTCACGGTTTTGCGCGACTTTGCGGCCATCTTCCGGGGCATGACTTACTGGGG 33886 || || | || || | ||| | || ||||| || || ||| || | |||||| Sbjct 113 AGAAGCCTGGACCGTGCTTAACGATCTGGCCGCCATTTTTCGCGGCGCTACGTTCTGGGG 54 Query 33887 TGGCGATCAGCTCGTTACGCTGGCAGACATGCCGCGCGATGTTGATTA 33934 | | ||| | | | | || ||||||||||| || ||||||| Sbjct 53 CAACAACCAGATGAATGTGATCGCCGACATGCCGCGTGACATTGATTA 6 >seq2972 Length=2207 Score = 141 bits (156), Expect = 2e-29 Identities = 375/572 (66%), Gaps = 12/572 (2%) Strand=Plus/Plus Query 33249 GACGGCGGGAGCTGGCAGCAGGTGCTGAAAACGGCGGTATCCGGCAAAACCACCAGCGGC 33308 ||||| || |||| ||| | |||||||||| ||||| |||||| || || | Sbjct 1511 GACGGTGGCAGCTATCAGGAACTGCTGAAAACAGCGGTCGACGGCAAGACTACGACGAAA 1570 Query 33309 TACGAGCGGAGCCACCGCATTGATTTACCGGCCGGTAAAACG---TGGAACCTTCGCCTG 33365 || ||||| || || |||||||| ||||| | | ||| ||| | | ||| || Sbjct 1571 TATGAGCGCAGTCATCGCATTGACTTACCCAATGCAACAACCGGCTGGCAAATCCGCGTG 1630 Query 33366 CGCAGGCTCACCCCGAACGCGAACAGCGCACGCATCGGCGACACCATGATGCTGGAAAGC 33425 || | | || ||||| | | ||| ||||| | ||| | ||| | | || | Sbjct 1631 CGTCGTATTACGCCGAATTCAACGAGCAACCGCATTGCCGATAAAATGGTTATTGATGCC 1690 Query 33426 TACACCACCATTATTGACGCGAAGCTGCGCTATCCGAACACCGCCTTACTCTACATGGAA 33485 || || ||||| ||||| | || |||||| | ||||| || | | | | Sbjct 1691 ATAACGGAAATCATTGATGCGAAATTACGTTATCCGGAAACCGCATTGTTGTTTGTTCAG 1750 Query 33486 TTTGATTCGAGCCAGTTTAACGGCTCTATTCCGCAAATCTCCTGCGAGCCGCGCGGGCGT 33545 |||||| ||| |||||| | ||| ||| || ||||| ||||| |||||| Sbjct 1751 TTTGATGCGAAGCAGTTTCAGAA---TATCCCGGTGATTTCCTGTGAGCCAGACGGGCGC 1807 Query 33546 GTCATTCGCGTTCCTGCGAACTATGACCCCGACACCCGCAGCTATACCGGCACCTGGGAT 33605 | || || ||||| | || ||||| || | |||| | || | ||| | ||| | Sbjct 1808 ATTATCCGTGTTCCCTCAAATTATGATCCGGTAGCCCGTACTTACAGCGGGGCATGGAAC 1867 Query 33606 GGCACGTTTAAATGGGCGTGGACGGATAACCCGGCCTGGGTGTTTTACGACCTGGTGATC 33665 ||||| ||||||||||| | || |||| ||||||||||||| ||||||| | |||| Sbjct 1868 GGCACCTTTAAATGGGCATTCACCAATAATCCGGCCTGGGTGTATTACGACATCCAGATC 1927 Query 33666 ACTGATCGCTTCGGACTCGGCGACCGGCTGGACGCCGATAA------CGTGGACAAATGG 33719 | |||||||| || || ||| |||| | | || || || ||| || ||| Sbjct 1928 AGCGATCGCTTTGGCCTTGGCAACCGCATCAAAGCTGAAAACCTTTCCGTCTCGAAGTGG 1987 Query 33720 GCGCTCTACCAGGTGGCGCAATACTGCGATCAGATGGTGCCGGACGGCAGGGGCGGCGAC 33779 |||| |||||| | ||||| || ||||| ||| |||| || || || | ||||| | Sbjct 1988 ACGCTGTACCAGATCGCGCAGTATTGCGACCAGTTGGTTCCTGATGGACGTGGCGGTAAT 2047 Query 33780 GGCAAAGAGCCACGCTATATGTGCAACGTCTA 33811 |||| || ||||| | | | ||| | || || Sbjct 2048 GGCACTGAACCACGTTTTTTATGCGATGTGTA 2079 >seq3149 Length=2211 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 30801 CACACCGCCGACGAAATTGCCGCGGCGGGTGGCGATGAAAGCAAGCTGGCGGCCAAATCA 30860 |||||| | || ||||||| |||||||||| ||||| | ||| | |||||||| Sbjct 885 CACACCTCAGAGGAAATTGAGGCGGCGGGTGACGATGTAGCAAAGATACTCGCCAAATCG 944 Query 30861 ATCTGGTGGCAGGGCGAAGAATATTCCGCCTGGCC 30895 ||||||||||||||| |||||||| |||||||| Sbjct 945 ATCTGGTGGCAGGGCAAAGAATATAAAGCCTGGCC 979 >seq2992 Length=1942 Score = 80.6 bits (88), Expect = 7e-11 Identities = 131/187 (70%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 11342 GAGTGCCAGGTACGCATTCCCGGCGTCTGTAATCACAACCCCGAAACCAGCGTGCTGGCG 11401 ||||||||||| | |||| || ||||||| |||| | |||||| |||||||| Sbjct 1756 GAGTGCCAGGTTAGGCTTCCGGGTATCTGTAACGGCAACGCTGAAACCGTAGTGCTGGCC 1815 Query 11402 CATATCCGCCTGCCCGGCACCTGCGGGATGGGGATCAAGCCGCCTGATCTGCTGGGAGCT 11461 ||| ||| || |||||| ||||| | || || ||||| || || | || || Sbjct 1816 CATTACCGAATGTCCGGCATTTGCGGCACAGGAATGAAGCCTGACGACCTTTTCGGCGCA 1875 Query 11462 ATAGC--GTGCAGCGCCTGTCACGACGAAATCGACCGGCGCACGCGGTTAACCGAAGCAG 11519 || || ||| | ||||| |||||||||||||| || || || || ||||| || | Sbjct 1876 TGGGCTTGTTCAGGG--TGTCATGACGAAATCGACCGTCGAACCCGTTTGACCGATGCTG 1933 Query 11520 AGTATGC 11526 | ||||| Sbjct 1934 AATATGC 1940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127789178290176