Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq3532 178 1e-39 seq3176 140 4e-28 seq2351 104 3e-17 >seq3532 Length=11862 Score = 178 bits (196), Expect = 1e-39 Identities = 148/181 (82%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || || |||||||||||||| ||||||||||| |||||||| ||||||||||| || || Sbjct 11329 GGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCGGTAAAA 11270 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 || ||||||||||| |||||| ||||||||||||| || ||||||||||| || || ||| Sbjct 11269 CACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGTTTCAAC 11210 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAGTCTATAA 43901 || |||| || |||||||| || ||||| || | || || || || || || || ||| Sbjct 11209 TCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGCCTGTAA 11150 Query 43902 T 43902 | Sbjct 11149 T 11149 >seq3176 Length=18404 Score = 140 bits (154), Expect = 4e-28 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 |||||||||||||||||||| ||||| || ||||||| ||| ||||| | | Sbjct 6494 GGTGGTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATGCCATGGAA 6435 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 || |||||||||||||||||| ||||||||||||| || |||||||| || ||||| ||| Sbjct 6434 CACCCGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGCGCTTCAAC 6375 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTAT 43873 || ||||| |||||||||| |||||||| Sbjct 6374 TCGCTGACCAAAGAACAGCAGCAAGACGTTAT 6343 >seq2351 Length=10305 Score = 104 bits (114), Expect = 3e-17 Identities = 285/431 (66%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 131909 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 131967 || || ||||| || ||||||| | ||||| |||||||||| || || || ||| | || Sbjct 2550 CGCTTCTATGACGCGATTTCTAC-CTTCAAGATTTCATTGCCAACGCCGATCATGTCCGG 2608 Query 131968 TGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 132027 | ||||| ||||| || |||||| || || | ||||| ||| || | Sbjct 2609 CGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTGATTGAGTGCGGCGACAGCCT 2668 Query 132028 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 132087 | || |||||| || || | || | |||| |||| | || || ||||| Sbjct 2669 GGATTCCATTAACGCCACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCGGTAT 2728 Query 132088 AGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGAT---CGGTATGGGTGAAG- 132143 || || |||| ||| ||||||| ||| ||| |||| ||||||| Sbjct 2729 CGGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGCCCGATTCGCGGT---GGTGAAGC 2785 Query 132144 -TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGT 132202 ||| ||||| || |||||| |||| ||||||||||| || ||||| ||||| || Sbjct 2786 ATTC--CATACTGGCTGTATTCCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTGC 2843 Query 132203 TCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAA 132262 || || || ||| | || || || || || || || ||| ||| ||||||| | ||| Sbjct 2844 TCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGAA 2903 Query 132263 GTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACAT 132322 || || | ||| | || ||||| || ||| |||||||| | ||||| | || || Sbjct 2904 GTGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCAC 2963 Query 132323 ATGGACTACGG 132333 | || ||||| Sbjct 2964 CTCGATTACGG 2974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541150757591040