Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq10 107 1e-18 seq676 93.3 3e-14 seq14 93.3 3e-14 >seq10 Length=2352850 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| |||||| || |||||||||||||| || ||| | || ||||| || Sbjct 821006 ATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGAGAGTGTTCTCCCATCCTCCAATTG 820947 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||| || || |||| ||||| || || | ||||| ||||| ||||| ||||| Sbjct 820946 TTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATCTT 820887 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| ||| | | || || || ||||| || |||| || || || || || || Sbjct 820886 GGCTTTGACATTTTCAATAGTGTCAGAGGCCTCTACTTCCAGTGTGATGGTCTTCCCAGT 820827 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| || |||||||| |||||||| Sbjct 820826 CAATGTCTTTACAAAGATCTGCAT 820803 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| |||||||||||| ||||| || || ||| ||| |||| ||||| || Sbjct 820094 ATGGAGGGTGGACTCTTTTTGAATGTTGTAGTCTGAAAGAGTTCTTCCGTCCTCCAATTG 820035 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||| || || |||| ||||||||||| | || | || || || || ||| || Sbjct 820034 TTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATTTT 819975 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| ||| | | || || || || || || |||| || || ||||| || || Sbjct 819974 AGCTTTAACATTTTCAATAGTGTCAGATGCTTCGACTTCCAGGGTGATGGTTTTGCCAGT 819915 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || |||||||||||||| Sbjct 819914 CAATGTCTTAACAAAAATCTGCAT 819891 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| || |||||||| ||||| || || || |||| | || ||| Sbjct 819871 ACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTTCGGCCATCTTCC 819812 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||||||||| || || ||||| || || || || | || | ||||| ||||| Sbjct 819811 AACTGCTTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 819752 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || ||||| ||||||| || || || ||| Sbjct 819751 ATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCGACCTCCAGGGTGATGGTCTTT 819692 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || || |||||||| Sbjct 819691 CCAGTCAACGTCTTCACGAAGATCTGCAT 819663 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| ||||| || || || ||||| || || ||||| || || Sbjct 820345 CCTCCTCTCAGACGCAGGACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAGTCTGAC 820286 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || |||| || ||||| || || |||| ||||| || || | |||| Sbjct 820285 AGAGTTCTGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 820226 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || || | | | || || |||||||| Sbjct 820225 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATCGTGTCAGATGCCTCCACT 820166 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || ||||||||||| || ||||||||||| Sbjct 820165 TCAAGTGTGATAGTCTTACCAGTCAAAGTTTTCACGAAAATCTGCAT 820119 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| |||||| || |||||||||||||| || ||| | || |||||||| Sbjct 820550 ATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGAGAGTGTTCTCCCATCCTCCAACTG 820491 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||| || || |||| ||||| || || | ||||| ||||||||| || ||||| Sbjct 820490 TTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGGATCTT 820431 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || || || || || | || ||||| |||||||| Sbjct 820430 GGCCTTGACATTTTCGATGGTGTCAGAGGCTTCGACTTCTAGGGTGATCGTCTTTCCCGT 820371 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 820370 GAGGGTCTTCACGAATATCTGCAT 820347 >seq676 Length=265522 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || || || || ||||||||||| ||| | ||| |||| ||| Sbjct 178346 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGACCGTCTTCC 178405 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || || || ||||||| ||| || || | ||||| |||||||| || Sbjct 178406 AATTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGG 178465 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || || | | | || || ||||| ||||| | || || || || Sbjct 178466 ATCTTTGCCTTCACGTTCTCGATGGTATCAGAGGCCTCGACCTCGAGGGTGATGGTCTTG 178525 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| ||||| || || |||||||| Sbjct 178526 CCCGTCAGCGTTTTCACGAATATCTGCAT 178554 >seq14 Length=2234412 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || || ||||| ||||||||||| || | || | || || Sbjct 1933606 ACCAAGTGAAGTGTCGATTCCTTCTGAATGTTGTAATCAGACAGGGTGCGTCCATCCTCG 1933547 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| ||||| || || ||||| | ||| || || | ||||| |||||||||||| | Sbjct 1933546 AGCTGTTTACCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 1933487 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | || || ||||||||||| | || || || || Sbjct 1933486 ATTTTGGCTTTGACATTCTCGATTGTGTCAGAAGCCTCCACCTCGAGGGTGATGGTCTTC 1933427 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||||| || |||||||| Sbjct 1933426 CCAGTTAGGGTTTTTACGAAGATCTGCAT 1933398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380919177857664