Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq2351 309 3e-79 seq2333 203 4e-47 seq3532 167 3e-36 >seq2351 Length=10305 Score = 309 bits (342), Expect = 3e-79 Identities = 482/675 (71%), Gaps = 28/675 (4%) Strand=Plus/Plus Query 40683 CTTCTATAACGCAATTTCGGATCGTAAAC-TGTCATTACCTACGCCTATTATGGCGGGTG 40741 ||||||| |||| ||||| | | | || | ||||| || ||||| || ||| | || | Sbjct 2552 CTTCTATGACGCGATTTCT-ACCTTCAAGATTTCATTGCCAACGCCGATCATGTCCGGCG 2610 Query 40742 TGCGTACTCCTACGCGTCAGTTC---TCCAGTTGTGTTGTAATCGAATCGGGTGATTCTC 40798 ||||||| || || ||||||||| ||| | |||||| || || | || || | Sbjct 2611 TGCGTACCCCAACCCGTCAGTTCAGCTCCTGC-GTGTTG--ATTGAGTGCGGCGACAGCC 2667 Query 40799 TGGGTTCTCTGAACGCTGTTACGTCC---GCGATCGTGAAGTATATCTCTCAACGTGCTG 40855 ||| ||| | ||||| || ||| || |||||||| || | || || ||||| | Sbjct 2668 TGGATTCCATTAACGCC---ACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCG 2724 Query 40856 GTATTGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAG 40915 |||| || | |||||||| | ||||| || ||||| || || |||||||||| Sbjct 2725 GTATCGGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGCCCGATTCGCGGTGGTGAAG 2784 Query 40916 CAGTACATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCCTGTT 40975 || | ||||| ||| ||| || |||| ||||| | ||||| || || |||||||| | Sbjct 2785 CATTCCATACTGGCTGTATTCCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTGCT 2844 Query 40976 CCCAGGGCGGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAG 41035 | ||||||||||| || || || || ||||| ||| ||| ||| | |||||||| |||| Sbjct 2845 CACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGAAG 2904 Query 41036 TTGAAAACCTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAACCGTATTCGTCACC 41095 | |||| |||| |||| ||||| || ||||||||||| |||| ||||| | ||||||| Sbjct 2905 TGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCACC 2964 Query 41096 TGGATTATGGCGTACAGCTTAACGATTTGATGTATAAGCGTTTAATCAATAACGATTACA 41155 | ||||| ||||| ||| | ||| | |||||||| |||| | |||| | | | Sbjct 2965 TCGATTACGGCGTGCAGTTGAACAAGCTGATGTATCAGCGCCTGGTCAAAGGACAAGAAA 3024 Query 41156 TCACTCTGTTCAGCC---CTGACGTTGCGAACGATCGCCTGTATGACGCGTTCTATCAAG 41212 |||| |||||||||| ||||||| | || ||||||||||||| || | || | Sbjct 3025 TCACCCTGTTCAGCCCCTCTGACGTACC---CG---GCCTGTATGACGCATT-TTTC--G 3075 Query 41213 CGGATCAGACTGAGTTTGAAGAACTGTAT-ACCAGTCTTGAAAAAGACCCAACGGTACGC 41271 | |||||| |||||| ||| | ||| | |||| |||||||||| | | ||| Sbjct 3076 CCGATCAGGATGAGTTCGAACGCTTATATCAGCAGT-ATGAAAAAGACGACAGCATCCGC 3134 Query 41272 AAGAAACGCATCAAAGCGGTAGATCTGTTCCAGTTGCTTGTTCAGGAACGCGCACAGACC 41331 |||||| ||| |||||||| ||||||||| | || | | || |||||||| ||| Sbjct 3135 AAGAAATCCATGAAAGCGGTCGATCTGTTCTCGCTGATGATGCAAGAACGCGCCTCTACC 3194 Query 41332 GGACGCAACTACATT 41346 || || | ||||||| Sbjct 3195 GGCCGTATCTACATT 3209 >seq2333 Length=8475 Score = 203 bits (224), Expect = 4e-47 Identities = 619/939 (66%), Gaps = 37/939 (4%) Strand=Plus/Minus Query 153310 CAACGAGAACGCGAACAAAGACGCAAGGGTATTCCCTACACAGCGCGATCTGCTGGCTGG 153369 |||||||||||| ||||||||| | ||| ||||||| |||||||| |||||||| || Sbjct 5627 CAACGAGAACGCCAACAAAGACAGTAAAGTAATCCCTACCCAGCGCGACCTGCTGGCCGG 5568 Query 153370 TATCGTAGCGAAACACTTCG-CACGTAACCACATTCTGCCAAAACACATTGTAGAAGCGC 153428 |||||| || || |||| || || | || || || ||||| || | || || | Sbjct 5567 TATCGTTGCCAAGCACTACGCCAAGCAA-CATATCCTGCCGCGCGACGTGGTGCTTGCTC 5509 Query 153429 ATGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTC-ACGCCATACACA 153487 |||| ||||| || || || || |||||||| ||| ||||||| | | || | Sbjct 5508 ATGAACGCGGTGAAATTCACTACCACGATCTGGACTACTCCCCGTTCTTCCCGATGTTC- 5450 Query 153488 AACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCA 153547 ||||| ||| | || | |||| ||| || | || || ||||||||||||||||| Sbjct 5449 AACTGTATGCTGATCGACCTTGAAGGCATGTTGACCAAGGGGTTCAAGATGGGTAACGCG 5390 Query 153548 GACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCA 153607 || || || || || ||||| ||| ||||| || | | ||| || |||| ||| Sbjct 5389 GAGATTGAGCCACCAAAATCCATCTCAACCGCGACAGCAGTGACGGCCCAAATCATCGCG 5330 Query 153608 CAGATTGCCTCTCACCAGTACGGCGGGACAACCTTTGCTAACG--TTGATAAAGTGCTGG 153665 ||| | || ||| |||||||| || ||| || | || | ||| || | |||| Sbjct 5329 CAGGTGGCAAGCCACATCTACGGCGGCACCACCATT--AACCGTATCGATGAAATTCTGG 5272 Query 153666 CTCCATATGTTCAAATGACA--TATGATAAGCACTTTAAAGATGCCAAAAAGTATCAAAT 153723 | || | || | | || | | |||||| || ||| | ||| || || Sbjct 5271 CACCGTTCGT--CACCGCCAGCCTTAAAAAGCACCGGGAAACTGCTGATGAGTGGCACAT 5214 Query 153724 CCCTCGTGATGTTCAGTATGCAATAGATAAAACTGAAAAGGATGTTTTCGACGCGTTTCA 153783 || || | |||||| | | || ||||| || | |||||| || || Sbjct 5213 TCCCGATGCGGACGCCTATGCACTGTCTCGTACCGAAAAAGAGTGCTACGACGCCTTCCA 5154 Query 153784 GTCATATGAATACGAAGTAAACACCCTGCATACTGCGAACGGTCAAACCCCGTTTGTTAC 153843 ||| ||||| |||||||| || ||||| || || || ||||| || |||||||| || Sbjct 5153 GTCGCTGGAATATGAAGTAAATACGCTGCACACCGCCAATGGTCAGACACCGTTTGTCAC 5094 Query 153844 AATTACGTTCGGTACTGGTCAATCCCGATGTGAA---CGCATGATCCAGAAAGCGATTCT 153900 || |||||| || | || |||| || ||| ||| |||| ||| || | || || Sbjct 5093 CTTTGGTTTCGGT-CTCGGCA--CCCGTTGGGAATCGCGCCTGATTCAGCAATCCATCCT 5037 Query 153901 GAAAAACCGTATTCGCGGCCTGGGTAAAGAGGGTATCACTCCGGTATTCCCGAAACTGGT 153960 | ||||| ||| ||| ||||| ||| | ||| || |||| ||||| ||||||| Sbjct 5036 GCGCAACCGCATTGCCGGTCTGGGCAAAAACCGTAAAACCGCGGTGTTCCCCAAACTGG- 4978 Query 153961 TATGTTC---ATGGAAAAAGGAATCAACCTTGATCCAGAGGATCGCAACTATGACATCAA 154017 ||||| || | || |||| | | | | |||| |||||||||||||| Sbjct 4977 --TGTTCGCTATCCGCGACGGTGTCAATCACAAGGCTGCCGATCCGAACTATGACATCAA 4920 Query 154018 ACAACTTGCCCTGGAATGTGCTTCTAAACGCATGTACCCAGATATCATTAGTTCAGCTAA 154077 ||||| || ||||| || || || || |||||||| ||||| | | || | Sbjct 4919 GCAACTGGCACTGGATTGCGCCAGCAAGCGGATGTACCCGGATATTCTCAATT------A 4866 Query 154078 CAACCGTGCTATTACTGGTTCTAGCGTTCCTGTA--TCTCCTATGGGTTGTCGCAGTTTC 154135 | | | | ||| |||| | | || | || | |||||||| || ||||||||| Sbjct 4865 CGATCAGGTGGTTA-AGGTTACCG-GCTCGTTTAAGACGCCTATGGGCTGCCGCAGTTTC 4808 Query 154136 CTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTTGATGGACGTAATAACCTGGGT 154195 ||| |||||| |||| || | || || | || | ||||| || || ||||| || Sbjct 4807 CTTGGCGTGT---ATGAGGAAGAGGGCAAGCAGATCCACGATGGTCGCAACAACCTCGGG 4751 Query 154196 GTGGTGACAATCAACCTCCCGCGTATTGCTCTTGAAGCA 154234 || | | ||||||| ||||| || || || |||||| Sbjct 4750 GTAATCAGCCTCAACCTGCCGCGCATCGCGCTGGAAGCA 4712 >seq3532 Length=11862 Score = 167 bits (184), Expect = 3e-36 Identities = 149/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 51000 GTGGAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCT 51059 |||||||| || |||||| | ||||| ||||| ||||||| ||||| ||||||||||| Sbjct 11335 GTGGAAGGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCG 11276 Query 51060 GTGAAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGT 51119 || || || || ||||||||||| ||||| || |||||||| || || |||||||||||| Sbjct 11275 GTAAAACACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGT 11216 Query 51120 TTCAATTCACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51179 ||||| ||| |||| || ||||| || || ||||| || | || || || || || || Sbjct 11215 TTCAACTCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGC 11156 Query 51180 CTATAAT 51186 || |||| Sbjct 11155 CTGTAAT 11149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570061323555840