Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019400.1 Length=147940 Score E Sequences producing significant alignments: (Bits) Value seq2955 324 1e-83 seq3838 100 3e-16 >seq2955 Length=1537 Score = 324 bits (358), Expect = 1e-83 Identities = 433/602 (72%), Gaps = 0/602 (0%) Strand=Plus/Plus Query 70282 TCGATTGCCTTCTGAGCTTCAGCCTTTGTCTGCTGGATTTCGTTCTCACGCAGCAGAGCT 70341 ||||| || || || |||||||| || | ||| |||||| || ||||||| | || Sbjct 635 TCGATGGCTTTTTGTGCTTCAGCTTTGGATTGCGCGATTTCATTTTCACGCAATAAGGCG 694 Query 70342 TTCTGAGTCGCTTCGATCTTCGCGTTGATGGACGCTGTTACCTGTGGTGGGTAACCGAGG 70401 ||| || |||||||| ||||||||||||||| || |||||| | | ||||| | ||| Sbjct 695 CGCTGGGTGGCTTCGATTTTCGCGTTGATGGACTCTTTTACCTTTTGCGGGTAGTCCAGG 754 Query 70402 TCATCAGTGTAAGACAGCTTCACGATCACGATACCGATTGGATCAAGTTTCGCTTTCAGG 70461 || | |||||||| || ||| ||| ||||| || || || || | ||||| | Sbjct 755 TCGCTGACCCATGACAGCTTTACAATCCTGATGCCGATAGGGTCGAGCTTGGATTTCAAG 814 Query 70462 GTTTTCGTCACACGATCCAGAAGCTGAGATTTACCATCACCAGCCAGCGTACCGATATCC 70521 | || || | ||||| | ||| | |||||| | | || |||| ||||||| Sbjct 815 TCCTGTGTGACCAGCTCCAGTAACTGCGTTTTACCGCCTGCGGCGAGCGAGTTGATATCC 874 Query 70522 ATCGTACCCGCTTCCTTGATCAGTGCATCAGAGATGTTCTGACGAATGTTGACATCGGTG 70581 ||| | || | | |||||||| || || ||||||||| || | |||||| |||||| Sbjct 875 ATCTTTCCAGAGTGGTTGATCAGCGCGTCGCTGATGTTCTGGCGCAAGTTGACCTCGGTG 934 Query 70582 ATTTCCTGAACACCTTTACGGTAAGTCTGGAAGATCTTGGTGACCTTAGAACGATCAACG 70641 ||||| | || || || ||||| ||||| || || ||||| ||||| |||| ||| Sbjct 935 ATTTCGTCCACCCCCTTGCGGTAGGTCTGAAATATTTTGGTCACCTTCTCCGGATCGACG 994 Query 70642 TAGTATTCAACACCAATCTTCGCAGTAACCGTCATAGAATCTTTGGTCTGGAAGTTGAAC 70701 || ||||| || || ||| || | || ||| || || |||||||| |||| Sbjct 995 TAATATTCGACGCCGATCCGGGCTTTCACATCCATTGAGTCAGCAGTCTGGAAAGTGAAT 1054 Query 70702 GGTTGTTCGTAGTTGTTCAACTGGTTGAACGTTGGGAACTGATAGATTTCTTCGTTCCAT 70761 || | |||||||||| | ||||||||||||||| ||||| || || ||||||||||| Sbjct 1055 GGCTTGTCGTAGTTGTGTAGCTGGTTGAACGTTGGAAACTGGTAAATGTCTTCGTTCCAG 1114 Query 70762 GTCAGCCAATATTTACCAACACCGACTTCCTGTTGCTGAACACCCTTCTCATCGCCGTAC 70821 || | ||| |||||||| || || |||||||| ||||| || || || || || ||||| Sbjct 1115 GTTAACCAGTATTTACCCACGCCCACTTCCTGCTGCTGGACGCCTTTTTCGTCACCGTAG 1174 Query 70822 AGGTCAACCTTGACACCAACGTAACCTGCCGGGACAGTTGCACGTTCACAACCTGTCAGG 70881 || || || || |||||||| || || || || || || || ||||| ||||| ||||| Sbjct 1175 AGATCTACTTTTACACCAACATACCCCGCGGGCACGGTGGCGCGTTCGCAACCAGTCAGC 1234 Query 70882 CC 70883 || Sbjct 1235 CC 1236 >seq3838 Length=22601 Score = 100 bits (110), Expect = 3e-16 Identities = 206/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 50033 TTGAGCCATAGCGTTGATCGTCAGGTCACGACGAGACAGATCCTCCACCAGTGTCACATC 50092 ||| || || |||||||| ||||| || || || ||||||| | |||| || ||||| Sbjct 3111 TTGGGCGATGGCGTTGATGGTCAGATCGCGCCGCAGCAGATCCGCTTCCAGCGTAACATC 3052 Query 50093 GGGGCTGAAGAATGTCTCG--AAGTCAGTATGACCGTTACCAGTCTTACGCTCAGTACGG 50150 ||| || | ||| | ||| | |||| |||||||| | || || |||||||| Sbjct 3051 GGG--TGCGGCATGGCAAATAAAGCCGGTATAGCCGTTACCCGATTTGCGTTCAGTACGC 2994 Query 50151 GCGAGAGCATACTCTTCGTTGGTTTCAGGATGCAGGTATACTGGAAAAGCAGCGCCAACC 50210 || || ||||||||||| ||| |||| || |||| | || |||||| | || ||| Sbjct 2993 GCTAGCGCATACTCTTCTTTGCTTTCCGGGTGCAAAAAGACGGGAAAATCCCGTCCGACC 2934 Query 50211 TGGGTGAAACCTTTATTGATCATTTCTTCGTGCGTTGCACCCACAACCACGTAGTCACGG 50270 || | | || | ||| | | | | || |||||||| ||||| ||||||| Sbjct 2933 TGCTGGTAGCCAAGCGCCAACATCTGTCCCGGTGTGGCACCCACCACCACCCAGTCACGT 2874 Query 50271 TCATGA-ACTTCACGACCAAGCAAACCATCACGCACAGCGCCACCTACCAGATATACCTT 50329 || ||| ||| || | || || | || ||||| ||||| || |||||||| ||| Sbjct 2873 TC-TGACACTGGGAGATCGAGTAAGGCGTCCCGCACTGCGCCGCCAACCAGATAACTCTT 2815 Query 50330 CA 50331 || Sbjct 2814 CA 2813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473256525312000