Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq2538 172 2e-38 seq2992 138 3e-28 seq2782 111 5e-20 seq2816 104 7e-18 seq3956 98.7 3e-16 seq3721 93.3 1e-14 seq2250 89.7 1e-13 >seq2538 Length=1407 Score = 172 bits (190), Expect = 2e-38 Identities = 347/515 (67%), Gaps = 21/515 (4%) Strand=Plus/Plus Query 24737 CGGGCGAAGAATTATGCCGCTGCCAATCCAGAAGGATGGCTAAATGGTCTGTTTCAGAAA 24796 ||||| ||||||| || | ||||||| |||| ||||| || ||| |||| || | Sbjct 866 CGGGCACAGAATTACGCTGTAACCAATCCTCAAGGCTGGCTGAACGGTGATTTTCCGATA 925 Query 24797 AATGATTCTGGAGGCATGGACATGCGTGCCATACGCCTTGTTGAATCAGGTGATCGACAT 24856 || ||| || || | || |||| |||||| | | || || || || | | ||| Sbjct 926 AAAGATAGCGGCGGTCTCGATATGCATGCCATTGGTATCGTAGAGTCCGGAGGTAATCAT 985 Query 24857 TTTAATCCTGATGGTAGTCTTCTTGAGGGACCGATAACATCTTCTGGAGAGAGAGCGCAG 24916 || ||||||||||||||| | || || || | | | | || ||| Sbjct 986 TTGAATCCTGATGGTAGTATCGTT------------ACGTCGCCAGCCG---GTGCTCAG 1030 Query 24917 GGGAAATACCAGTTAATGCCGGGCACAGGAAAAGAACTGGCGGCCAAGCGTGGCGTTGAA 24976 || ||||| || | ||||| | || || || ||| |||| | ||||| || |||||| Sbjct 1031 GGTAAATATCAACTGATGCCAGATACTGGCAAGGAATTGGCCGATAAGCGAGGGGTTGAA 1090 Query 24977 TACAACCCTACTGACGAACAACAGCATGAAATGCTCGCCAGTGACTATGTAAATCAACTG 25036 || ||||| |||| |||||||| | | ||||| ||||| || || | | | | || Sbjct 1091 TATAACCCCGCTGATGAACAACAAAACGCTATGCTTGCCAGAGATTACGCTACTGAGTTG 1150 Query 25037 TATGGTAAGTACGGTTCCGAAATATTGACCGGAGCAGCATATAACTGGGGGATGGGTAAC 25096 ||||| || || || ||||||| | | || || ||||||| ||||| ||||| || Sbjct 1151 TATGGCAAATATGGCACCGAAATGCTTGCTGGTGCTGCATATAGTTGGGGAATGGGAAAA 1210 Query 25097 GTGGATAAACTGATCGCCAAAGTCGGTGATCCACGTAAAGGTGAAATATCAGAAGAAGAA 25156 || || | || || || | | ||| |||||||||||||| ||||| |||||| || Sbjct 1211 GTAGACAGTCTTATTGCAGATGCCGGGGATCCACGTAAAGGGGAAATTTCAGAATCTGAC 1270 Query 25157 TTTAT---CCGAAATCTTCCATCAGAAACACAAGGGTGGCTTTCCCGATATAGAAAAAAT 25213 ||||| |||| || || |||||| | || ||| | || || || |||||||| Sbjct 1271 TTTATTGGCCGA---CTACCGCAAGAAACCCGTGGTTGGTTGTCTCGGTACCGAAAAAAT 1327 Query 25214 AAAACTGGAATGGATCCGCTGACTATTTATCAAAT 25248 ||||| || | || || || || || || |||| Sbjct 1328 AAAACGGGGCTAGACCCTGTGTCTGTTAATAAAAT 1362 >seq2992 Length=1942 Score = 138 bits (152), Expect = 3e-28 Identities = 233/333 (70%), Gaps = 11/333 (3%) Strand=Plus/Plus Query 31340 CATTCCACGGCGCAGAGCTTTATGTTGTCAATCATAACGGCGAACCATACACCCCAATGA 31399 |||||||||||| | || ||| | ||||| || ||||||||||| || ||||| |||| Sbjct 412 CATTCCACGGCGACAATCTCTATCTCGTCAACCACAACGGCGAACCCTATACCCCGATGA 471 Query 31400 AACCAGTCGTTGAAGGTATGGGGCTGGACTGGAAAACGCAGTTCCGCAAGTTGCAACAAC 31459 | || | || ||| | |||||| |||| |||| ||| | ||| | |||| Sbjct 472 AGCCCATTGTAGAAAGCATGGGGATGGATTGGATGGGGCAATATTTAAAGCTTAAACATA 531 Query 31460 GCTTTAAGAGCTGC-ATGGTCGAAATGACCATTCAGCTCCCCGGTGAT---ACTCAGCGT 31515 | |||| | | | || | ||||| | || | | |||| || | ||||| Sbjct 532 GATTTA-GCTCAACTATAGAGGAAATCTCTAT---GGTTGCCGGAGACGGGAAGCAGCGC 587 Query 31516 CGTCTGGTTATCTGTCTTGCTTTACGCAAACTTGCAGGTTGGCTGCAAACCATCAGCCCT 31575 |||| ||| || || | || || || ||||| ||||| || |||||||| | Sbjct 588 AAAATGGT---CTGCCTCCCTCTCCGAAAGCTCGCAGGGTGGCTCCAGACCATCAGTCTC 644 Query 31576 AACAAAGTCCGCCCTGAAATCCGCGACAAGGTAATCCAGTATCAGGAAGAGTGTGACGAT 31635 |||||||| |||||||||||||||||||| || | |||||| | ||||| |||||| Sbjct 645 AACAAAGTTAATCCTGAAATCCGCGACAAGGTGATGAAATATCAGAACGAGTGCGACGAT 704 Query 31636 GTGCTCTACGAGTACTGGACTAAAGGCCATGTG 31668 |||||||||||||| ||||||| ||| | ||| Sbjct 705 GTGCTCTACGAGTATTGGACTACCGGCGAAGTG 737 >seq2782 Length=6651 Score = 111 bits (122), Expect = 5e-20 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 198 ACCGATACAAAATTAAAAAACCTCAAGCCGCAGGACAAACTGTACAAGGTCTCCGATCGT 257 || || || ||| ||||||| || ||||| |||||||| |||||||| | |||||| Sbjct 1462 ACAGACACTAAACTAAAAAATCTTAAGCCTTCAGACAAACTCTACAAGGTTACAGATCGT 1403 Query 258 GACGGGCTGTATGTAGCTGTGCTTACGTCAGGCACGGTCTCGTTTCGCTATGACTACCGT 317 || |||||||| || || || |||| | | || || || || |||||||||||| | Sbjct 1402 GATGGGCTGTACGTGGCGGTTCTTAAGACGGGTGTTGTATCATTCCGCTATGACTACAGG 1343 Query 318 ATCAACGGTCGCCGCGAAACACTGGTAATCGGGCAGTATGGGCGTGACGGTATCAGCCTG 377 || ||||| | | ||||| || ||||| |||| |||||| |||||| | ||| Sbjct 1342 ATAAACGGGAGAAGAGAAACGCTAACCATCGGTAAGTACGGGCGTAGCGGTATTAACCTA 1283 Query 378 GCAGAAGCGCG 388 || ||||| || Sbjct 1282 GCCGAAGCACG 1272 Score = 96.9 bits (106), Expect = 1e-15 Identities = 402/632 (64%), Gaps = 2/632 (0%) Strand=Plus/Minus Query 740 TAATCCTGCGGCTGACATTAAACCTTCGTCTATCGCCATATTTAAACCACGAGAGCGAAC 799 |||||| || | || |||||| | || || ||||| | ||| | |||||||| || | Sbjct 920 TAATCCCGCTGAGGAAATTAAAGCATCCTCAATCGCAACTTTTCAGCCACGAGACAGAGC 861 Query 800 ACTGACACCAGAAGAAATTGGCC-TGTTCTTCCGCACGCTGGATGCCATTGGTGCTATGG 858 ||| ||| |||| | | || | || ||||| |||||| ||||||| | Sbjct 860 GTTGA-ACCCGAAGGAGATAGCGGTATTTTTCCGGTATCTGGATAAAGTTGGTGCCCTTC 802 Query 859 GCACTATGAAAATGGCTTTAAAGCTGGTGCTTATCACTATGGTTCGTAAAGGCGAATTCA 918 || |||||| |||| || |||||||| |||| |||| |||||| | ||| | | Sbjct 801 CGACAATGAAACTGGCATTGCGACTGGTGCTGCTCACACTGGTGCGTAAAAGTGAACTGA 742 Query 919 CCAATGCAACGTGGGACGAAATAGATTTTAAAAAATGGACATGGACAATTCCTTCAGACC 978 || || || ||||| || | |||||| | | ||| || || | | | Sbjct 741 TTAAAGCGACATGGGATGAGGTCGATTTTGAGGGGGCGTGCTGGGTGATACCCGCCGGCA 682 Query 979 GCATGAAGGGAAGCCGGGCGCATGTTATTTACCTGCCTAAACAGGCACAGGATATATTGG 1038 | ||||| | | | ||||| || || ||||||||| | | ||||| |||||| || Sbjct 681 GGATGAAAGCAGGGCGGGCACACGTGATTTACCTGTCAGAGCAGGCTTTGGATATTATGA 622 Query 1039 TCGGGTTGCAGATGTACGCTGGTGGAAGTGAATATCTGGTTCCTGGTCGTTACAACTTCC 1098 || || | |||| ||||| || || | | | | || |||||| || Sbjct 621 CGGGATTAAAAATGTGTGCTGGAGGTTCAGATTTTATTCTACCATCGCGTTACGACACGA 562 Query 1099 GGAAGCCATTATCTAATGCCGCGCTGAACTCTCTGATCGACAGAACGGTGAAAATAATAA 1158 || || || ||| | || | ||| ||||| ||||| | || || | || Sbjct 561 CTAAATGTTTGTCCAATTCAGCATTAAACAGGCTGATTGACAGCGCAGTTGAACTGGCAA 502 Query 1159 ATGAAGATGGTGAGCATATTCAGGACTTCACCGTACATGATATGCGCCGTACAGCCAGTA 1218 || |||| || || | || | || | || || ||| | | | || || | Sbjct 501 ATAAAGAAGGGGAAAGACTGGAGCATTTTTCTGTTCACGATCTCAGGAGAACCGCATCGA 442 Query 1219 CGTTGTTGCATGAGGCTGGTTATCCTTCAGACTGGATTGAAAAGGCTCTGGCACATGAGC 1278 | ||||| |||||||| |||| | ||||||||||||||| | | || || | | Sbjct 441 CATTGTTACATGAGGCAGGTTTTAACAGCGACTGGATTGAAAAGTGTTTAGCGCACGGAC 382 Query 1279 AGAAAGGTGTGCGCGCCGTATATAACAAAGCGGAATACGCCAGACAGCGCGCCTACATGT 1338 ||||||||||| | ||||| || || ||||| ||||| || |||||| | ||| Sbjct 381 AGAAAGGTGTGAGGGCCGTTTACAATAAAGCTGAATATGCGGCCCAGCGCAGGAATATGC 322 Query 1339 TGCAGCAGTGGGCCGATATGATTGATTCCTGG 1370 | || |||||||| | ||| ||||| |||| Sbjct 321 TCCAACAGTGGGCTAACATGGTTGATGACTGG 290 >seq2816 Length=1529 Score = 104 bits (114), Expect = 7e-18 Identities = 137/181 (76%), Gaps = 8/181 (4%) Strand=Plus/Plus Query 34165 TGGTGGTGAACTGTGCAGGGTTGGCGTAACCGGCTAA-AAGGACCCGGCGCACCTTTCGG 34223 ||| ||||| ||| |||||| | ||||||||| |||||||||||| |||||||| Sbjct 799 TGGCGGTGAGCTGAATAGGGTTCACAGTACCGGCTAACAAGGACCCGGCGAGCCTTTCGG 858 Query 34224 TGCCCCCACACAGCCCACCATAATACGAATGTGGCCGTGCTATACGCATaaaaaaa--CC 34281 |||||| ||||||||||| || | || |||| | || ||||||||||||| | Sbjct 859 CTCCCCCATCCAGCCCACCATTATTCTGATATGGCAG-ACT-GACGCATAAAAAAAACAC 916 Query 34282 GCTTGCGCGGTG-AATGCGCCTT-TTAGTAATCCGGGACGCCAATCCCGGCA-CTGGATT 34338 |||| || ||| ||||||||| ||||| ||||||| | || ||||||| ||| ||| Sbjct 917 GCTTTCGGCGTGTTATGCGCCTTGTTAGTTATCCGGGCTGTGAAACCCGGCACCTGAATT 976 Query 34339 T 34339 | Sbjct 977 T 977 >seq3956 Length=1013 Score = 98.7 bits (108), Expect = 3e-16 Identities = 180/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 33796 GGAAGAACCTCACCTGTAACCCATTTACGAAAGCGGTAGGGGATAGTGCCTGGTGTCACC 33855 ||||| ||||||| ||| ||||| || || ||||| | ||| | |||||| | |||| Sbjct 346 GGAAGTACCTCACTTGTTACCCACTTGCGGAAGCGATGGGGCAGGGTGCCTTGCTTCACA 405 Query 33856 GCATCGCGGCAGCGGAGGATCAGTGTGTAGAGGCCTGACTCGGAGATGATGATCGATTCT 33915 || || ||||||||||| | || ||| | | ||| || ||||||||||| | || Sbjct 406 GCGTCACGGCAGCGGAGTACCAAGGTGAACATGCCGGATTCGGAGATGATAGCTAAGTCC 465 Query 33916 TGCTCACCGCCAGGGGTGTCGGTTGAAGCGACGCCCTTCTCATCATCATCAAGTTTTCGA 33975 ||| || |||||||||| ||||| || ||||||| ||||| || | | | | Sbjct 466 TGCCGTCCTCCAGGGGTGTAAATTGAACTTACATCCTTCTCGTCATCGTCCAATGCTTGT 525 Query 33976 ACAG-CATCTCGATGGTTTGCTATGCCTATAGCCCGACAAACATCTGAAGCGATAAACCA 34034 | || ||| ||| || | || | | || ||||||||| || | |||||| Sbjct 526 AGAGACAT-GCGAGAATTCGTTAGCTCCAGAGAATCACAAACATCCTTGGCAACAAACCA 584 Query 34035 TGGCTCACCATTAATGACGAT 34055 |||||| ||||||| | ||| Sbjct 585 AGGCTCATCATTAATAATGAT 605 >seq3721 Length=2264 Score = 93.3 bits (102), Expect = 1e-14 Identities = 153/210 (73%), Gaps = 12/210 (6%) Strand=Plus/Plus Query 34164 TTGGTGGTGAACTGTGCAGGGTTGGCGTAAC---CGGCTAAA-AGGACCCGGCGCACCTT 34219 |||| ||||| ||| |||||| || ||| |||||||| ||||||||||| |||| Sbjct 928 TTGGCGGTGAGCTGAATAGGGTT--CGAAACTACCGGCTAAACAGGACCCGGCGAGCCTT 985 Query 34220 TCGGTGCCCCCACACAGCCCACCATAATACGAATGTGGCCGTGCTATACGCATaaaaaaa 34279 |||| |||||| ||||||||||| || | || |||| | || ||||||||||||| Sbjct 986 TCGGCTCCCCCATCCAGCCCACCATTATTCTGATATGGCAG-ACT-GACGCATAAAAAAA 1043 Query 34280 C-CGCT-TGCGCGGTGAATGCGCCT-TTTAGTAATCC-GGGACGCCAATCCCGGCACTGG 34335 | |||| | ||| |||||||| |||||| |||| ||| | ||||||| ||| | Sbjct 1044 CACGCTGTAGGCGTGTTATGCGCCTGTTTAGTTATCCGGGGTTTCGAATCCCGACACCTG 1103 Query 34336 ATTTTTCCAGTGCCCGATTACTATGGCACA 34365 | || | |||| | | ||||| || || Sbjct 1104 AATTCGCAGGTGCGAGTTGACTATAGCGCA 1133 >seq2250 Length=1935 Score = 89.7 bits (98), Expect = 1e-13 Identities = 117/153 (76%), Gaps = 8/153 (5%) Strand=Plus/Minus Query 34193 ACCGGCTAAA-AGGACCCGGCGCACCTTTCGGTGCCCCCACACAGCCCACCATAATACGA 34251 |||||||||| ||||||||||| |||||||| |||||| ||||||||||| || | Sbjct 249 ACCGGCTAAACAGGACCCGGCGAGCCTTTCGGCTCCCCCATCCAGCCCACCATTATTCTG 190 Query 34252 ATGTGGCCGTGCTATACGCATaaaaaaa--CCGCT-TGCGCGGTGAATGCGCCT-TTTAG 34307 || |||| | || ||||||||||||| |||| | ||| |||||||| ||||| Sbjct 189 ATATGGCAG-ACT-GACGCATAAAAAAAACACGCTGTAGGCGTGTTATGCGCCTGTTTAG 132 Query 34308 TAATCCGGGACGCCAATCCCGGCA-CTGGATTT 34339 | ||||||| |||||||| || ||| |||| Sbjct 131 TTATCCGGGTTTGCAATCCCGACACCTGAATTT 99 Score = 84.2 bits (92), Expect = 6e-12 Identities = 91/117 (78%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 34164 TTGGTGGTGAACTGTGCAGGGTTGGCGTAACCGGCTAAA-AGGACCCGGCGCACCTTTCG 34222 ||||||| || ||| ||||| || ||||||||||| ||||||||||| ||||||| Sbjct 372 TTGGTGGCGAGCTGAACAGGGCTGCAAAAACCGGCTAAACAGGACCCGGCGAGCCTTTCG 313 Query 34223 GTGCCCCCACACAGCCCACCATAATACGAATGTGGCCGTGCTATACGCATaaaaaaa 34279 | |||||| ||||||||||| || | || |||| | || ||||||||||||| Sbjct 312 GCTCCCCCATCCAGCCCACCATTATTCTGATATGGCAG-ACT-GACGCATAAAAAAA 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143180453019136