Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019455.1 Length=37151 Score E Sequences producing significant alignments: (Bits) Value seq3688 316 5e-82 >seq3688 Length=22785 Score = 316 bits (350), Expect = 5e-82 Identities = 881/1333 (66%), Gaps = 24/1333 (2%) Strand=Plus/Plus Query 12766 AGGCGGTGGCTGAACGGCGTAAACAGGTATCCGACCCTGTAAATGGCT-TGGCATTTTTT 12824 |||| |||| | |||||| |||||| | ||||| || || |||| | || | |||| Sbjct 6299 AGGCCATGGCGGCGCGGCGTTTACAGGTGGCTGACCCGGTGAACGGCTATCGC-TATTTT 6357 Query 12825 ATTAATCATTATTTTCCGCACTATGTTCG-CTCCCCGTCTAAATCTCAACTACACCGTTA 12883 | | ||||||||||||||| | || | || | | | |||| || ||||| Sbjct 6358 GTGCAGACCTATTTTCCGCACTATATCCGTCATAGCGACCCCAGCG-AACTGCATCGTTA 6416 Query 12884 CCTTTTTGAGCGATTACCGAAAGTGTTTGCGAGTGAGAAATCTTGCCTTGAAGCGATTGC 12943 ||| ||| |||| | || | | | || ||| |||| | || || || || Sbjct 6417 CCTGTTTCAGCGCCTGCCACACATCGTCGCCAGTCCGAAAGGCGAGCAGGACGCCATCGC 6476 Query 12944 TGCTCCCCGTGGTGAAGCAAAATCAACGATAGTCACTCAGCTCTCTACACTTTGGTGTTT 13003 || || ||||| || || || |||||| | |||| ||||| | | || |||||| | Sbjct 6477 CGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGTCAGCCAGCTGTTTGTGCTGTGGTGTCT 6536 Query 13004 GGTGACGCAGAAAAAA-CGCTACGCCCTATTAGTGATGGACTCTATCGACCAAGCCTATC 13062 |||| ||| | | || | ||| ||||| | |||||||| || |||||||| ||||| | Sbjct 6537 GGTG-CGCGGCATCAAGCACTATGCCCTGGTGGTGATGGATTCCATCGACCAGGCCTACC 6595 Query 13063 CTATGCTAGAAGCGATTAAATCAGAGCTGGAGTTTAATCAACGTTTACGCATTGATTTCC 13122 | ||||| ||||| || || | |||||||| || || | || | | ||| |||| Sbjct 6596 CGATGCTCGAAGCCATCAAGGCCGAGCTGGAATTCAACCCCCGGCTGCTGGCTGACTTCC 6655 Query 13123 CTGA-GATTGCAGGGGCTGGGCGTGTTTGGCAGTCGGGGACAATCATTACTCGGGCAA-- 13179 | || | ||| || ||||| || |||||| ||| || ||| | || || ||| Sbjct 6656 CCGAAGCCTGC-GGCATGGGGCGCGTCTGGCAGATGGGCACCATCCTGACGCG--CAACG 6712 Query 13180 ATCAGAAAGTCCAAGTGGCAGGCTCAGGCAAAAAATTGCGTGGTTTACGCCACGGGGCTT 13239 || || || || ||||| ||| || ||||| |||| || | ||||||||| | | Sbjct 6713 ATATCAAGGTGCAGGTGGCCGGCAGCGGTAAAAAGCTGCGCGGCCTGCGCCACGGGCCGT 6772 Query 13240 ATCGTCCTGATTTGGTGATTTTGGACGATATTGAGAATGACGAACAAGTTCGCAACCCTG 13299 | || ||||| ||||||| |||||||||||||||| ||||| || || |||||||| | Sbjct 6773 ACCGCCCTGACCTGGTGATACTGGACGATATTGAGAACGACGAGCAGGTACGCAACCCGG 6832 Query 13300 AACAGCGTGACAAATTGCATAATTGGCTCAAGAAAACTGTACTACCGTTAGGCTCTGCGG 13359 | ||||| ||||| || | || ||||| | ||||| || || ||| | || ||||| Sbjct 6833 ACCAGCGCGACAAGCTGGAAAACTGGCTGAGAAAAACCGTGCTGCCGCTGGGTGGTGCGG 6892 Query 13360 ACGGTAAGTTAGATGTAATTTATATCGGTACGATTTTGCATTATGACAGCGTACTTAGTC 13419 || || | ||||| | |||||||| || || ||||||| ||| || | | Sbjct 6893 GCGCAAAACTCGATGTGGTCTATATCGGCACCATCCTGCATTACGACTCGGTGTTATCAC 6952 Query 13420 GCACTCTTGCCAGTAAAGCG---TGGAATACCGCCCATTTTAAAGCTGTTTTAAAAATGC 13476 |||| || | ||| || ||| || | ||||| || | | || Sbjct 6953 GCACCCT---GAATAACCCGCTATGGCGGCAGGCGCGCTTTAAGGCCCTGCGCCAGTGGC 7009 Query 13477 CTGACAATATGGTGCTTTGGGATAAATGGGAACA-CTTTTATCTAACC--GAAGGAGAAG 13533 | | || || | | ||||| | ||||| || | || ||||| | || || | Sbjct 7010 CGGTGAACCTGTCGTTGTGGGAGAGCTGGGAGCAGCGCTTGCGTAACCAGGGAGAGGATG 7069 Query 13534 CGGTCGCAGATGCGTTTTATTTTGCAAATCAAGCGGAAATGGATAAAGGGGCGGTAGTGT 13593 ||| ||||| | |||||| || | | | || ||||| |||| |||| ||| | Sbjct 7070 CGG-CGCAG--GATTTTTATACGTCACACCGTACCGAGATGGAGGAAGGCGCGGAAGTCT 7126 Query 13594 CGTGGGAAGCTCGTCCTATTCTGGCGTTAATGAAAATTCGAGCAAGGGACGGACACGCTA 13653 | ||| || || || | ||| | | ||| | || || || | ||||| ||||| | Sbjct 7127 CCTGGTCCGCACGGCCGCTGCTGACCCTGATGCATATCCGCGCCCGTGACGGTCACGCCA 7186 Query 13654 CTTTTGACTCGGAATATCAAAACGACCCTGTAAGCGGTGATGATGCGATTTTTGCGAATA 13713 | ||||| | || || || || | ||| || |||||||| |||||| | ||||| | Sbjct 7187 CCTTTGATGCCGAGTACCAGAATGCCCCGGTCAGCGGTGAAGATGCGCTGTTTGCCCACT 7246 Query 13714 GCTTGCAATACTGGACGGAGTTGCCTGATGACTTGATTTATTTTGGGGCGTTAGACCCAT 13773 || |||| | |||| | || | | || | | ||| | ||||| | ||||| Sbjct 7247 GCCTGCATTTCTGGGTCAACCGGCTTAACGAGTGGCTTTTCTACGGGGCCTGCGACCCCA 7306 Query 13774 CTATGGGGAAAGCGGGGGCAAGCCGTGACCCGTCGGCGATTTTGGTCGGTGGCTATCACC 13833 | || || || ||||| |||||||||||||| ||| | |||||||||||| | | | Sbjct 7307 GCCTCGGCAAGGCCGGGGCCAGCCGTGACCCGTCAGCGCTGCTGGTCGGTGGCTTTAATC 7366 Query 13834 GTGCAAGCGGTAAGTTATATGTGGTAGAAGCGCAGATTAAGAAGCGTTTGCCTGATTTGA 13893 | || | ||| | | ||||||| ||||||||||| ||||| |||| || | Sbjct 7367 GCGCCACCGGCGTGCTGGATGTGGTGGAAGCGCAGATACGCAAGCGGCTGCCGGACGCCA 7426 Query 13894 TTATCGAAGATGTGATTAGGCTACATACACAATACCAGTGCCATAAATGGTTTGTAGAAA 13953 ||||| || | ||| || || | ||||||| || | ||| | || Sbjct 7427 TTATCAGCAATATTATTGCTCTGCAAAAGGAATACCACTGTCTGGTGTGGGGCATTGAGG 7486 Query 13954 CGGTGCAGTTTCAGGAGTTTTTGCAGACGGAGCTGGTTAAACGCTCGGCACAACGTGGCA 14013 ||||||||||||||||||| ||| || |||||| |||| ||| ||||||| | || Sbjct 7487 CGGTGCAGTTTCAGGAGTTCCTGCGCACCGAGCTGATTAAGCGCGCGGCACAGCTGGGTC 7546 Query 14014 AGCCTGTGCCAGCAATGGCAGTTAAACCTAACACCGACAAGATGTTGCGGATTGAGAGCT 14073 | || ||||| || ||| ||| || | |||||||| ||||||| || |||| | Sbjct 7547 ACCCGGTGCCGGCGCGGGCTATTATCCCCCATGCCGACAAGCTGTTGCGTATCGAGACCC 7606 Query 14074 TGCAACCGCATAT 14086 |||| || ||||| Sbjct 7607 TGCAGCCCCATAT 7619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118756003953408