Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq3842 318 1e-82 seq3690 145 2e-30 >seq3842 Length=22882 Score = 318 bits (352), Expect = 1e-82 Identities = 647/947 (68%), Gaps = 24/947 (3%) Strand=Plus/Plus Query 23003 CTGCCTTATCTGGCCTGGGCGTTTTCTGTTGACCGCTGGGATGAGAGCTGGACAGAAAGC 23062 ||||||| ||||||||||||||| || ||||||||||||||| | ||||| ||||| Sbjct 21363 CTGCCTTTTCTGGCCTGGGCGTTGTCCGTTGACCGCTGGGATAAACGCTGGTCAGAACAA 21422 Query 23063 GTCAAGCGCCGCGTTGTGCAGGACGCTTTTTATATCCATCAGCACAAGGGGACAAC--CC 23120 |||||| | || | | || | | || || | || || || || | || Sbjct 21423 ACCAAGCGTCAGGTGATTAAATCAGCCTGGTTGATACACCGCCAGAAAGGCACCATTGCC 21482 Query 23121 GCGCCGTGCGGCGCGTGGTGGAGCCGTTCGGCTTCCTGATCCGCATCATTGAGTGGTGGC 23180 |||| |||| || ||||| ||||| || || | | || | ||| | || || ||||||| Sbjct 21483 GCGC--TGCGCCGGGTGGTTGAGCCATTTGGTTACTTGCTGCGCGTGATCGAATGGTGGC 21540 Query 23181 AGACCGGCGAAACGCCGGGAACGTTCCGTCTGGATATTGGCGTACAGGATCATGGTATCA 23240 | ||||||| ||||||||| || | |||||||| ||||| ||||| | ||||| | Sbjct 21541 AAACCGGCGGTGTGCCGGGAACCTTTCACCTGGATATCGGCGTGCAGGACAACGGTATTA 21600 Query 23241 CCGAAGACACCTATCTGGAGCTTGAGCGCCTGATAAGCGATGCCAAACCATGCAGCCGTC 23300 | ||||| |||| | | ||| ||||||| ||||| || ||||| || ||||||| Sbjct 21601 CTGAAGAAACCTTTTTAGAGATTGAGCGGCTGATTGCTGACGCCAAGCCGCTTAGCCGTC 21660 Query 23301 ATCTGGTTGGTATGTCCATCAACCTGCAGAC---AGGTGGCCCGTATTTTGTGGGGGCAG 23357 | || | || | |||| || | || ||||| | ||| | | || ||| Sbjct 21661 ACTTGTTGGGGCTCAATATCACGTTGGATACGCAAGGTGCGGCCTATGTCGCGGC--CAG 21718 Query 23358 CCACCTACACCGGCGAAGAAATCACGATCTACCCGTATATCAACGAAACCATTATTTCCG 23417 | ||| |||||| || | || | ||||| ||| || |||||||| | ||| Sbjct 21719 CGTT-TACGACGGCGATGAGTTGACCGTATACCCCTATTTCCCTGAAACCATCA---CCG 21774 Query 23418 GC--GGCACCGCTTATGAGGGCGGGGCGGTC---CATGTTATTGACACAATGAGAGTGAA 23472 | | ||| | | ||| || | | || || ||||| || ||||| || | Sbjct 21775 TGATGTCGCCGTACAGTAC--CGGTGCAGGCATTCACGTGATTGATACGATGAGTGTAAC 21832 Query 23473 TCCATGAGCGCAAAATTTTATACCCTGCTGACGGAGATCGGCGCGGCGAAACTGGCAAGC 23532 ||||| ||||||||| ||||| | || | || |||||||| | ||||||| | Sbjct 21833 CGTATGAGTACAAAATTTTTCGCCCTGTTAACCAACATTGGCGCGGCCAGGCTGGCAAAC 21892 Query 23533 GCCGCCGCGCTCGGTGTCCCG-CTGAAAATTACCCATATGGCGGTGGGCGACGGTGGCGG 23591 || | ||||||||| || || ||| | || || |||||||| || || ||||| ||||| Sbjct 21893 GCAACTGCGCTCGGT-TCACGTCTGGATATCACGCATATGGCCGTCGGTGACGGCGGCGG 21951 Query 23592 TGTGCTGCCCACACCCAGCGCGCAACAGACCGCGTTAGTTGCTGAGAAGCGTCGAGCAGC 23651 || | || || || | | || ||||||| || | || ||||| || || || || Sbjct 21952 CGTATTACCGACGCCAAACCCGGCACAGACCACGCTGATTAACGAGAAACGCCGCGCGGC 22011 Query 23652 GCTGAATATGCTGTATATCGACCCGCAGAACAGCAGCCAGATTATTGCTGAGCAAGTGAT 23711 | |||| ||| |||| || | || | | || |||||||| | ||| ||||| Sbjct 22012 CATCAATAGCCTGAGCGTCGATCCCAACAATACCCATCATATTATTGCCGTGCAGGTGAT 22071 Query 23712 CCCGGAAACTGAGGGGGGATGGTGGATTCGTGAGGTCGGCCTGTTTGATGAAACCGGCGC 23771 ||| |||| ||| ||||||| ||||| ||||| ||||||||||||||| || Sbjct 22072 CCCCGAAAATGAAGGGGGATTCTGGATACGTGAAATCGGCCTGTTTGATGCTGAAGGTAA 22131 Query 23772 ACTGATCGCCGTGGGTAACTGCCCTGAGAGCTACAAGCCGCAGCTGACAGAAGGGAGCGG 23831 |||| || || | |||||| | || | ||| |||||||| || ||||| ||||| Sbjct 22132 TTTGATTGCGGTTGCCAACTGCGCCGAAACCTATAAGCCGCAATTGCAGGAAGGCAGCGG 22191 Query 23832 ACGTACGCAGACCGTGCGCATGGTACTGATTACCAGCAGCACCGATAACA-TCACCCTGA 23890 ||||| ||||||||||||||| | ||||| | |||||| || |||| | | || | Sbjct 22192 ACGTATTCAGACCGTGCGCATGATTTTGATTGTCTCCAGCACAGA-AACAGTATCGCTTA 22250 Query 23891 AAATTGACACTGCAGTAGTGCTGGCAACCCGTAAATATGTAGATGAT 23937 ||||||| | || || ||||||||||| ||| ||||| |||||| Sbjct 22251 AAATTGATCCGGCGGTGGTGCTGGCAACGCGTGGCTATGTGGATGAT 22297 Score = 201 bits (222), Expect = 2e-47 Identities = 442/645 (69%), Gaps = 22/645 (3%) Strand=Plus/Plus Query 4406 GAAAAGCGGGAGTTGATTAAAGCAATGAATCATTTTCGTGCAGTGGTGAGCTTATTTCCA 4465 ||||| || | |||||| || ||||| |||||||| | |||||||||||||| | Sbjct 3465 GAAAAAAAGGCGCTGATTATTGCCATGAACCATTTTCGGGTGATGGTGAGCTTATTTTCT 3524 Query 4466 AGACGGCTAACCATGCCGAATTAACCAACTAATGAAATTAATGGCGTAAACCCGCCGGGC 4525 ||| || ||| || || |||| || | ||||| ||||||||||||||||||||| Sbjct 3525 GAACGACTGACCTTGTCGGTTTAATTCACGACAGAAATCAATGGCGTAAACCCGCCGGGC 3584 Query 4526 ATCCCTTTAT--CT-AAATTCAGGAGAATTGATTATGCGTAATATTGAAACCCTCACGAC 4582 | |||| || |||| |||||||| ||| ||||| || | |||||||| || || Sbjct 3585 GGC---TTATTGCTCAAATGCAGGAGAAATGACAATGCGAAAGACTGAAACCCGTACCAC 3641 Query 4583 CAAAGCCGGACCGGATGACGCAGGGCTTAATATTTTACTGACAGAGGCTCGTCTGGAAGA 4642 || | | | ||| | | | | |||| | | ||| ||||| || |||| || Sbjct 3642 CAGAAACTTCCTGGACGCCACCAGCGTTAACCTGCTGTTGAACGAGGCCCGGATGGATGA 3701 Query 4643 ACGCCGGGCAAGGGCTGAAGCAATGGCAGCTCGCCTTGATAGCCTGGCGTGT-CATATCA 4701 |||| ||| | || || | | || |||||||| || || ||||| ||| ||||||| Sbjct 3702 ACGCAGGGGGTGTGCCGACGTGTTCGCCGCTCGCCTGGAAAGGCTGGC-TGTGCATATCA 3760 Query 4702 CATCCCGC--CAG-CTAAACCACGTCGAAGCGGCAGAGCTGCTGCGTG-TGACTGCTGAA 4757 | | | ||| || | | || || || || |||||||| | || | || | Sbjct 3761 C---CGGTAACAGACTGGGCAGTATTGATGCTGCCGAACTGCTGCGAGATGTC-GCACAG 3816 Query 4758 GCAATCCAGAACGAAGCGCAGGAGATCCACTAATGGCTGATGCAATGGATCTCGTACAAC 4817 ||||||||||| |||||||||| || || ||| | |||||||||||| | | || Sbjct 3817 CGCATCCAGAACGACGCGCAGGAGAGCCGCTGATGCCAGATGCAATGGATGTTATCCAGT 3876 Query 4818 AGCGCGTTGAAGAAGAACGTCAGCGTCATATCCGTGCTGCCCG-TGCCAAAACGCCGGGC 4876 || || ||||||| |||||||| |||||| ||| || || | | || | | || Sbjct 3877 GGCACGAGGAAGAAGCGCGTCAGCGCCATATC--TGCCGCGCGTTATTCAGACCCGGTGC 3934 Query 4877 -GTGTCCCGCGTGCTTTGCATTGAGTGTGAAGCACCAATTCCGCCAGCACGACGCCGCGC 4935 || || || |||| || ||||||| |||| ||||||||||| || | ||| || Sbjct 3935 GGTTTCGCGGGTGCGCTGTGCCCAGTGTGATGCACGCATTCCGCCAGCCCGCCACCGGGC 3994 Query 4936 CATTCCGGGTGTGCAGCTTTGCATTACTTGCCAAGAAATCGCAGAGCTGAAAGGCAAACA 4995 ||||||| |||||| ||| | || ||||| |||||| |||| ||| || ||| Sbjct 3995 GGTTCCGGGCGTGCAGTACTGCGTGACCTGCCAGGAAATCAATGAGCGTAAACACAGACA 4054 Query 4996 TTACAAC-GGAGGTGCTGTATGAGCACCATCCTGAAATGGGCGGG 5039 ||| | ||||| | |||| | |||||||||||||| || Sbjct 4055 CGACAGCAGGAGG-AAAGCATGAAACCGATCCTGAAATGGGCAGG 4098 >seq3690 Length=4460 Score = 145 bits (160), Expect = 2e-30 Identities = 456/696 (66%), Gaps = 28/696 (4%) Strand=Plus/Plus Query 25185 TCACGCACATACCACATGGATTGGTCCGCATGACCACACTGTATATATCGGCCCACACGG 25244 ||||| |||||| | || ||||| ||| ||| | || |||||||| | ||||| Sbjct 2715 TCACGGGCATACCGTCGGCATCGGTCCACATAGCCATAACGTTTATATCGGTGCGCACGG 2774 Query 25245 CCACGTCGTTATTGTGGACGCAGACGGTAATGAGGAAACAACGGTTAAAAACATTGCATT 25304 ||| ||||| | | | || || |||| | || || | || | || || Sbjct 2775 GCACAACGTTACTATAATCCCAACAGGCAATGCATCTAATACTGTAGATAATACCGCTTT 2834 Query 25305 TAATTACATAGTGAGGCTTGCATAATGACTTTTAAAATGAGCAGCAAAGCGCGGACAATT 25364 |||||| |||||||||||||||||||| |||| |||| ||| |||| || ||| Sbjct 2835 TAATTATATAGTGAGGCTTGCATAATGGATTTTGAAATATCCAGTGAAGCAAAAACCATT 2894 Query 25365 ACGATTTATAACCTGCGTTCAGATACGAATGAATTTATTGGGGCAGGTGATGCGTATATA 25424 | ||||||||| || | | ||||| || ||||||||||| || || ||||| ||||| Sbjct 2895 AAGATTTATAATCTCCACGCTGATACAAAGGAATTTATTGGTGCTGGAGATGCTTATATT 2954 Query 25425 CCGCCACACACGGGATTACCGGCAAACTGTACGGATATTGCACCCCCTGATATTCCCGCC 25484 || || ||||| || ||||||||| |||||| | ||||| || || || | | | Sbjct 2955 CCACCTCACACAGGGTTACCGGCACTCTGTACAACAACCGCACCACCAGAAATCCTGGTC 3014 Query 25485 AGTCATATTGCTGTATTTGACGCTGAAACCGAA---ATGTGGAGTCTGCATGAGGACCAC 25541 ||| ||||||| ||| ||| || || ||| || ||| | | || || || Sbjct 3015 GACCATGTTGCTGTTTTTAACG-TGCAA--GAACAGATTTGGGTACAGGTAGAAGATCAT 3071 Query 25542 CGTGGCGAGACGGTTTACGACACAACAACCGGCAATCAGGTTTATATCTCCTCTCCCGGT 25601 || || || || || || |||| ||| || || ||| || ||| | || Sbjct 3072 CGAGGAGAAACTGTCTATGACAAAACGACAGGGAATGCTATTCTAATCACAAAGATTGGA 3131 Query 25602 CCGCTACCTGAAAACGTCACATCAGTTTCACCTGATGGTGAATATCAGAAATGGAATGGT 25661 || || || |||| | || ||||| |||| ||||| | |||||||| ||| Sbjct 3132 TCGTTATCTAGCAACGAGGTGTGCATTGCACCTAATGGAAAATATGAAAAATGGAACGGT 3191 Query 25662 AAGGCGTGGGTAAAAGACGAAGTGGCTGAAACAGCGGC-CAGACTTCGT-GAAGCTGAA- 25718 |||| ||||| |||||| | || || |||| | || || | || | ||||| || Sbjct 3192 AAGGTTTGGGTGAAAGACAAGGTTGCGGAAAAAAATGCTCATA--TCATAGAAGCAAAAA 3249 Query 25719 ---GGAACCAAAA---GCCGTCTTTTGCAAACAGCAGCGGAGAAAATCGCGCCATTACAG 25772 ||| | || || | | ||| |||| | | || | ||| || || Sbjct 3250 CTCAGAAAAATAATATGCTGATGATAGCACACAGTATGGTAGCTA--CGC-----TAGAG 3302 Query 25773 GATGCTGTTGATCTTGAAATCGCAACAGATGATGAGAAAGTGC--AGCTCGACGAGTGGA 25830 |||||||| || |||||||| ||||| || || ||||| | | ||| || |||| Sbjct 3303 GATGCTGTAGAACTTGAAATAGCAACTGACGA--AGAAACCTCTAAACTCCCCGTCTGGA 3360 Query 25831 AAAAATACAGGGTGTTGGTAAACCGGGTAGATACCA 25866 |||||||| | ||| || | ||||| || |||| || Sbjct 3361 AAAAATACCGCGTGCTGATTAACCGTGTCGATATCA 3396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109047661432064