Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq14 114 2e-20 >seq14 Length=2234412 Score = 114 bits (126), Expect = 2e-20 Identities = 279/420 (66%), Gaps = 2/420 (0%) Strand=Plus/Minus Query 222107 TTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCC 222166 || ||| | ||||||| ||| || || || ||||||||||||||||| ||||||||||| Sbjct 774779 TTCTTCTTGAGATCCAGAAAATCGAAGATATCAGCGTGCCACGGCTCGAGATAGACGGCA 774720 Query 222167 AGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATG 222226 | || || || || ||||| || |||||||| || | | | | ||| | | Sbjct 774719 AATGCCCCAGGGCGTTTGTTACCCCCCTGATCAACGTAACGCGCTGTATTATTGTAAACA 774660 Query 222227 CGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCG 222286 ||||| || || ||||| ||||| || |||||||| || || || | Sbjct 774659 CGAAGCAGGGGCACAAGTCCATTGGACACCCCATTGGTGCCAGCTATTCGCGTGCCCTTG 774600 Query 222287 GCCCTCAGGTTACTG-GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCA 222345 || || | | | || || | || | |||||| || || |||| || || Sbjct 774599 GCTCTGATG-CAGTGAACATTGACTCCAACACCACCAGCTGACTTGCTTATCAGTGCACA 774541 Query 222346 GCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACA 222405 |||||||| ||||| ||||||||| ||| |||||| | | ||||||||||||| Sbjct 774540 CCTCTTGAGGGTGTCGTAGATGCCCTCGATACTGTCCTCAGTCATTGTCAGCAGAAAACA 774481 Query 222406 AGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465 |||||||| | || | ||||| || ||||| || ||| || || || Sbjct 774480 GCTGGACATCTGTTGTCTGCAAGTGCAGGCTGAGAAGAGCGTTGGTGAGGCATGAGTGAA 774421 Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525 ||| | | | |||| || ||||||||| | ||||||| |||||| ||| |||| || Sbjct 774420 GTATCTCTTGGACAGATAATTGTACGTCTCAATGACTCTGTCGATGTCCTCCTCGTGTAT 774361 Score = 98.7 bits (108), Expect = 2e-15 Identities = 446/699 (64%), Gaps = 21/699 (3%) Strand=Plus/Minus Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGCAGCGT 221429 ||||| |||||| | ||| | | || ||| | | || || ||| || |||||| | | Sbjct 232400 GTACGTCTCGTAAGTACCCTTCTCTTGGGCGAGTTCACAGGA-TGCCTCCAGGGCACCAT 232342 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 ||||| |||||| |||||| |||||||| ||| |||||| | ||| || Sbjct 232341 AGTAGAGGGTCTCGAAGATCTGGATGTTGAGTTTCTGGGCCTCATCACTGTCGAATGGAT 232282 Query 221490 TACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTC 221549 ||||| || | || | || ||||| ||||| ||||| || || ||||| | ||||| Sbjct 232281 AACGCATCAGTAGGAATGCATCTGCCAGACCCTGAACTCCAATTCCCATGGGACGGTGTC 232222 Query 221550 TCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGA 221609 || ||||||| | || || || ||||| | ||||||||||| | ||| || Sbjct 232221 TCATGTTGGAGACTCTTGCCTCCTCAACTGGATAGTAATTGACGTCGATGACCCTGTCGA 232162 Query 221610 GGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGC 221669 | || |||| ||||| || || ||| | | ||| | || || Sbjct 232161 GATTTCTGGTGACAACTTTGACGAC---------TGTCTTGAGTTTG---TCGAAGTCAT 232114 Query 221670 CGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGC-AACGCTGGCCAGGTTACACACG 221728 | | | | || |||||||| ||| | || | || | |||| || || || Sbjct 232113 AGGTCTTCTTCACTGGATCCACAAACATGTTGACTGCTATCGAT-GCCAAATTGCAGACA 232055 Query 221729 GCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATG 221788 || || || || | | | |||| | |||||| || || | ||||||||| || || Sbjct 232054 GCAACTTCATCGGGGCTCGAGTACTCAACGATCTCGGTGCACAAGTTGCTGCATTTTATT 231995 Query 221789 GTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGA 221848 || || |||| || ||||| || || | ||| || |||||||| ||||| ||||| Sbjct 231994 GTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCAGGCATCCTTGTACAGCATGTAGGGA 231935 Query 221849 CCGCCAGTCTCCAGCTGAGCCACCAGAA-TCTTGTCCCAGAGTTCTCTGGCGCTCACCGT 221907 |||||||| | || | || |||| | ||| ||| || || | ||| ||| Sbjct 231934 GTTCCAGTCTCAACTTGTGACATTAGAATTGCTGT-CCACAGCTCACGGGCTGGCACTTG 231876 Query 221908 CCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACC 221967 | |||| | |||| || || ||| || || ||| | || || | ||||| Sbjct 231875 ACGCTTGTAACGAGCCTC---CTCCTCGTACTTTGTGTACAGCTTATCGAATTCCTCACC 231819 Query 221968 GTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTC 222027 | | || |||||||||||| | ||| ||||||| ||||||| | || | Sbjct 231818 CCAAGTGTCACAGAGGCCTGGACACTCGTGGGGGCACATCAAACTCCAGGGACCGTCTGC 231759 Query 222028 TTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 ||||| | | |||||| | || || |||||||| || Sbjct 231758 CTTGACACGTTTCATGAACAAATCGGGTATCCACAGGGC 231720 Score = 95.1 bits (104), Expect = 2e-14 Identities = 415/649 (64%), Gaps = 21/649 (3%) Strand=Plus/Minus Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGCAGCGT 221429 ||||| |||||| | ||| | | || ||| | | || || ||| || |||||| | | Sbjct 775953 GTACGTCTCGTAAGTACCCTTCTCTTGGGCGAGTTCACAGGA-TGCCTCCAGGGCACCAT 775895 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 ||||| |||||| |||||| |||||||| ||| |||||| | ||| || Sbjct 775894 AGTAGAGGGTCTCGAAGATCTGGATGTTGAGTTTCTGGGCCTCATCACTGTCGAATGGAT 775835 Query 221490 TACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTC 221549 ||||| || | || | || ||||| ||||| ||||| || || ||||| | ||||| Sbjct 775834 AACGCATCAGTAGGAATGCATCTGCCAGACCCTGAACTCCAATTCCCATGGGACGGTGTC 775775 Query 221550 TCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGA 221609 || ||||||| | || || || ||||| | ||||||||||| | ||| || Sbjct 775774 TCATGTTGGAGACTCTTGCCTCCTCAACTGGATAGTAATTGACGTCGATGACCCTGTCGA 775715 Query 221610 GGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGC 221669 | || |||| ||||| || || ||| | | ||| | || || Sbjct 775714 GATTTCTGGTGACAACTTTGACGAC---------TGTCTTGAGTTTG---TCGAAGTCAT 775667 Query 221670 CGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGC-AACGCTGGCCAGGTTACACACG 221728 | | | | || |||||||| ||| | || | || | |||| || || || Sbjct 775666 AGGTCTTCTTCACTGGATCCACAAACATGTTGACTGCTATCGAT-GCCAAATTGCAGACA 775608 Query 221729 GCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATG 221788 || || || || | | | |||| | |||||| || || | ||||||||| || || Sbjct 775607 GCAACTTCATCGGGGCTCGAGTACTCAACGATCTCGGTGCACAAGTTGCTGCATTTTATT 775548 Query 221789 GTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGA 221848 || || |||| || ||||| || || | ||| || |||||||| ||||| ||||| Sbjct 775547 GTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCAGGCATCCTTGTACAGCATGTAGGGA 775488 Query 221849 CCGCCAGTCTCCAGCTGAGCCACCAGAA-TCTTGTCCCAGAGTTCTCTGGCGCTCACCGT 221907 |||||||| | || | || |||| | ||| ||| || || | ||| ||| Sbjct 775487 GTTCCAGTCTCAACTTGTGACATTAGAATTGCTGT-CCACAGCTCCCGGGCTGGCACTTG 775429 Query 221908 CCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACC 221967 | |||| | |||| || || ||| || || ||| | || || | ||||| Sbjct 775428 ACGCTTGTAACGAGCCTC---CTCCTCGTACTTTGTGTACAGCTTATCGAATTCCTCACC 775372 Query 221968 GTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAG 222016 | | || |||||||||||| | ||| ||||||||||||||| Sbjct 775371 CCAAGTGTCACAGAGGCCTGGACACTCGTGGGGGCACATCAGACTCCAG 775323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928798729297920