Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019518.1 Length=44485 Score E Sequences producing significant alignments: (Bits) Value seq2705 178 4e-40 >seq2705 Length=2265 Score = 178 bits (196), Expect = 4e-40 Identities = 253/357 (71%), Gaps = 12/357 (3%) Strand=Plus/Plus Query 10449 AAGTGGCCGAAGTCAGGTTGTGTTATTGGACCCGTCCGCACAGTCGCTTGGCGCGTCCTC 10508 || ||| || | |||||||||| |||||| | | || | ||||||||||| Sbjct 90 AAATGGACGCACGCAGGTTGTGTGTCTGGACCACAAAGGATTATCTCCTGGCGCGTCCTT 149 Query 10509 GATGCCCAATATTTCGGACTGGCCCAACGACGCAAGCGTGTGTTTGTTGTCGCAAGTGCT 10568 ||||| |||| ||||||| |||||||||| ||| |||||||| |||||||||||| || Sbjct 150 GATGCTCAATTTTTCGGAGTGGCCCAACGCCGCCGCCGTGTGTTCGTTGTCGCAAGTTCT 209 Query 10569 CGAAAAGGATTTGATCCCGCAGAAGTATTATTTGAGCGCGAAGGCGTGCGAAGGGATTCT 10628 ||||||| || |||||||||| ||| | ||||||| | | |||| || ||||| || Sbjct 210 CGAAAAGACTTCGATCCCGCAGCGGTACTTTTTGAGCTCAACAGCGTTCGCCGGGATACT 269 Query 10629 CCGCCGAGCCGAGAAGCGTTGCAAGAAGCTGCC---------GGAA---TCATTAGAGAC 10676 |||||| |||||||| || ||| |||| |||| |||| | | | | Sbjct 270 CCGCCGCGCCGAGAAACGCAGCAGGAAGTTGCCAGCTATGCTGGAAAACGCTCTGATGTC 329 Query 10677 GGCTCTCATTGGGACGATCCGAGAAACGCACACCCAACCTTAAATCAATCCTTCAACACT 10736 || ||| |||||| | || ||| |||||||| || | || || ||| ||| | | Sbjct 330 GGTAGTCACTGGGACAACCCAGCAAATCCACACCCAGCCCTGAACCAGTCCAACAATATT 389 Query 10737 GGCGGAATAGGGGCGAGTAACCAAGAAATATTCAGTCAGCGCGGTGCGGGAGTTGTA 10793 || || || || || || || || ||||| ||||| |||||||| | || ||||| Sbjct 390 GGTGGTATTGGCGCCAGCAATCAGGAAATTTTCAGCCAGCGCGGATCTGGGCTTGTA 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142223698103552