Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq2333 129 4e-25 seq2373 86.0 4e-12 >seq2333 Length=8475 Score = 129 bits (142), Expect = 4e-25 Identities = 270/399 (68%), Gaps = 10/399 (3%) Strand=Plus/Minus Query 28561 AGGAGTAACTGACAAAGGTTACTTAACAAACTCATTCCACTTAGACGTACTGAAGAAGGT 28620 ||| || || || |||||||||| || ||| |||||||| ||||| ||||||||| Sbjct 4274 AGGCGTGACCGATAAAGGTTACTACACCAACAGCTTCCACTTGGACGTGGAGAAGAAGGT 4215 Query 28621 AAACCCGTATGATAAAATCGACTTTGAA--GCGCAATTCATCCCATACAGCTCCGGTGGT 28678 || || || | ||||||||||||||| || | | || | | || ||| || Sbjct 4214 GAATCCTTACCAGAAAATCGACTTTGAACTGCCCTACCCACCGCTGGCAAA--CGGAGGC 4157 Query 28679 CATATCTGCTACGGGGAATTCCCTAATATGCGCCACAATATTGAAGCACTCGAAAATGTG 28738 || |||||||| || | || || ||| || || || |||| || ||| | || Sbjct 4156 TTCATTTGCTACGGCGAGTATCCGAACCTGCAACATAACCTTAAAGCGCTGGAAGACGTC 4097 Query 28739 TGGGATTACGCCTACACCAAAGTCCCATACTACGGCACCAACACACCAATTGATGAATGC 28798 ||||||||| || | | || || || ||||||||||| || || || ||||| ||| Sbjct 4096 TGGGATTACAGTTATAGCCGTGTGCCCTATTACGGCACCAATACGCCGATCGATGAGTGC 4037 Query 28799 TATAGCTGCGGATTCAAAGGTGAGTTCAATTGTACAAGCAAAGGTTTTGAGTGTCCTAAC 28858 ||| || || |||| |||||||| | || || |||||||| || || || || Sbjct 4036 TATGAGTGTGGCTTCACCGGTGAGTTTGAGTGCACCAGCAAAGGCTTCACCTGCCCGAAA 3977 Query 28859 TGCGGAAACCACGACCCAGAGAAATGC---TCTGTCACCAGACGAGTGTGTGGCTACCTA 28915 || || || |||||| | | | || ||||| || | || || |||||||| || Sbjct 3976 TGTGGCAATCACGACTCCG---CACGCGTATCTGTGACGCGTCGGGTATGTGGCTATCTG 3920 Query 28916 GGTAATCCTGGTACTCGTCCATTCAATGCAGGTAAACAG 28954 || | || | | | ||||| || || || || || ||| Sbjct 3919 GGCAGCCCGGATGCACGTCCGTTTAACGCCGGGAAGCAG 3881 Score = 116 bits (128), Expect = 3e-21 Identities = 247/369 (67%), Gaps = 0/369 (0%) Strand=Plus/Minus Query 27650 ACTGAAAAAGACGTATTCGATGCTTGTCAGACTCTAGAATACCAAGTAAATACTATTTAC 27709 || |||||||| | ||| || | ||| | || ||||| |||||||||| | || Sbjct 5182 ACCGAAAAAGAGTGCTACGACGCCTTCCAGTCGCTGGAATATGAAGTAAATACGCTGCAC 5123 Query 27710 TCAACTAATGGTCAGACTCCGTTCTTGACATTTGGATTCGGTCTAGGTACTTCTTGGGAA 27769 | | ||||||||||| ||||| | || ||||| |||||||| || || ||||||| Sbjct 5122 ACCGCCAATGGTCAGACACCGTTTGTCACCTTTGGTTTCGGTCTCGGCACCCGTTGGGAA 5063 Query 27770 GCTAAACTAGTTCAGAAAGGTATTCTACAGAATCGTATTGCTGGTCTAGGTAAAGAAGGT 27829 | || ||||| || || || | || || ||||| ||||| || ||| | || Sbjct 5062 TCGCGCCTGATTCAGCAATCCATCCTGCGCAACCGCATTGCCGGTCTGGGCAAAAACCGT 5003 Query 27830 ACTACTCCGGTATTCCCTAAGCTAGTATTTGGTCTCAAAGATGGGGTAAACCTGAAGCCA 27889 | || |||| ||||| || || || || | | || || || || || | ||| | Sbjct 5002 AAAACCGCGGTGTTCCCCAAACTGGTGTTCGCTATCCGCGACGGTGTCAATCACAAGGCT 4943 Query 27890 GAAGACCCTAACTACGATATTAAGCAGCTTGCATTAGAATGTGCTACTGTTCGCATGTAT 27949 | || || ||||| || || ||||| || ||| | || || || | || ||||| Sbjct 4942 GCCGATCCGAACTATGACATCAAGCAACTGGCACTGGATTGCGCCAGCAAGCGGATGTAC 4883 Query 27950 CCAGACATACTTAACTACGATAAGACTGTTGAAATTACAGGCGGATATAAAGCACCTATG 28009 || || || || || |||||| || ||| | |||| ||| | ||| | |||||| Sbjct 4882 CCGGATATTCTCAATTACGATCAGGTGGTTAAGGTTACCGGCTCGTTTAAGACGCCTATG 4823 Query 28010 GGCTGTCGC 28018 ||||| ||| Sbjct 4822 GGCTGCCGC 4814 >seq2373 Length=3101 Score = 86.0 bits (94), Expect = 4e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 45234 ATGCGCCCTTAGCTCAGCTGGATAGAGCACGTCCCTTCTAAGGATGTGGTCGTAGGTTCG 45293 ||||||||||||||||| ||||||||||| ||||||||| |||| |||||||| Sbjct 1496 ATGCGCCCTTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCATAGGTTCG 1555 Query 45294 AATCCTACAGGGCGTGCCAT 45313 ||||||| ||||||| |||| Sbjct 1556 AATCCTATAGGGCGTACCAT 1575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356677150258816