Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019530.1 Length=157785 Score E Sequences producing significant alignments: (Bits) Value seq3764 98.7 1e-15 seq2351 96.9 3e-15 seq2689 86.0 6e-12 >seq3764 Length=2321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 137301 ATGGTCCTGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCATTGGTTCAA 137360 |||| || |||||||||||||||||||| ||||||||||||| |||||| ||||||||| Sbjct 2200 ATGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAA 2141 Query 137361 ACCCAATCAGGATCACCATATTAA 137384 |||||| || |||||||| || Sbjct 2140 ACCCAACAGGGGCCACCATATAAA 2117 >seq2351 Length=10305 Score = 96.9 bits (106), Expect = 3e-15 Identities = 281/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 52637 TTCACCAGGCGCTCGAACATAACGCGGTTAATCTGAATCCCATAGTCGATACGGCGTTCA 52696 || |||||||||| |||| | ||| | ||| | || || |||| | || | Sbjct 3013 TTGACCAGGCGCTGATACATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACG 2954 Query 52697 CGGTTCTCTTCCAATCCACGGTTGTTTTTGAGAACAACGACATCATCAAATTGATAATGC 52756 ||||| |||||| ||||||||||| || || || | | || | || |||| Sbjct 2953 CGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGC 2894 Query 52757 CAGATGGGAACATAGCATGTTGCCGATCCACCACGGATACCGCCTTGAGAGCAAGACTTC 52816 || | || | | | ||||||| ||| || || | |||||| || ||||| || ||| Sbjct 2893 CACAGCGGGTAAAACAACGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTC 2834 Query 52817 AGGGCACCAGTC---AAATACTTGATGAATGGAAC-CAGACCTGTATGGACCATTTCCCC 52872 | || ||| |||| || ||| |||| ||| || ||||||| ||| || Sbjct 2833 ACTGCG---GTCTGGAAATGTTTATAGAAAGGAATACAG-CCAGTATGGAATGCTTCACC 2778 Query 52873 TTTACGGATAGGGCTACCGATGCCACGAATTGCCCCAACATCGAATCCGATGCCAGCACG 52932 || || |||||||| | ||||||| || | | | ||||| || ||||| Sbjct 2777 ACCGCGAATCGGGCTACCCAGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACG 2718 Query 52933 TTTGGAAACATAATCCACGATGCTTTTCGCAGTGGCATTAATTGAGTCCAATGTATCACC 52992 | ||||| || | |||||| | | ||||| ||||| || |||| | || || Sbjct 2717 CTGTGAAACGTATTTCACGATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCC 2658 Query 52993 AGTTTTGATCAATACACAAGAGCTGAACTGTCGGGTCGGGGTGCGGACGCCGGACATAAT 53052 | ||||| || || ||||||||||| ||||| ||||| || ||||||||||| || Sbjct 2657 GCACTCAATCAACACGCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGAT 2598 Query 53053 AGGTGTTGG 53061 || ||||| Sbjct 2597 CGGCGTTGG 2589 >seq2689 Length=2575 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 137811 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137870 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 1460 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 1519 Query 137871 CATCGTCGCCAAATT 137885 || | |||||||| Sbjct 1520 CAGAGGAGCCAAATT 1534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504758962713600