Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq2494 206 7e-49 seq2992 140 8e-29 seq3093 120 8e-23 seq2734 114 3e-21 seq2972 113 1e-20 seq2902 91.5 4e-14 seq3877 87.8 5e-13 seq3821 80.6 7e-11 >seq2494 Length=1509 Score = 206 bits (228), Expect = 7e-49 Identities = 285/396 (72%), Gaps = 2/396 (1%) Strand=Plus/Minus Query 36186 ATGGCTAATCTACGCAAAGAAGCACGCGGCAGAGAATGCCAGGTACGTATTTACGGCGTA 36245 ||||| ||||| | ||||| || | || |||| || ||||| | | | || | Sbjct 795 ATGGCGAATCTTAGAAAAGAGGCCAGAGGTCGAGAGTGTCAGGTGAGGCTCTCGGGTATC 736 Query 36246 TGCAATGGTAATCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGGA 36305 || || || || ||||||| ||| ||||| |||||||| ||| | || |||||||| Sbjct 735 TGTAACGGCAACGCTGAAACCGTAGTGCTGGCCCATTACCGAATGTCGGGCATTTGCGGC 676 Query 36306 ACGGGAATGAAGCCTGACGACCTGATCGGCGCATGGGCTTGTAGCGCGTGTCACGATGAA 36365 || |||||||||||||||||||| | ||||||||||| ||| || |||||||| ||| Sbjct 675 ACAGGAATGAAGCCTGACGACCTTTTTGGCGCATGGGCCTGTTCTGCCTGTCACGACGAA 616 Query 36366 ATCGACCGACGCACCCATAATCTCGACAACAAAGACGCCAAACTTTACCACCTCGAAGGC 36425 || ||||| ||||| | || ||| | | | ||| || | || || |||||| Sbjct 615 ATAGACCGCCGCACGCGTATCACCGATGCCGACTATGCCCGGCTGCATCATCTGGAAGGC 556 Query 36426 GTGATCAGGACGCAGGCGATACTGCTGAAGGAGGGGAAGATTAAGCCATGAACGAATATC 36485 || ||| | || |||||||| | ||| | ||||||||||||||| ||||||||||||| Sbjct 555 GTCATCCGCACACAGGCGATTTTACTGGCGCAGGGGAAGATTAAGCGATGAACGAATATC 496 Query 36486 AGTTTGTGCTTCCATACCCGCCGTCGGTGAACACCTACTGGCGAAGACG-GGGAAGCCAA 36544 | | || ||||| || || ||| | |||||||||||||| | ||| || | Sbjct 495 ACCTGAAACTGCCATATCCACCATCGTTAAACACCTACTGGCG-ACACGCACGACATCGG 437 Query 36545 TACTACATCAGCGCTAAAGGCCAGAAATACCGAAAA 36580 |||||||||||| |||||| | ||||||| || Sbjct 436 CACTACATCAGCGAGAAAGGCAAAGCATACCGACAA 401 >seq2992 Length=1942 Score = 140 bits (154), Expect = 8e-29 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 36185 AATGGCTAATCTACGCAAAGAAGCACGCGGCAGAGAATGCCAGGTACGTATTTACGGCGT 36244 |||||| ||| | | ||||| || | ||| | || |||||||| | || || | Sbjct 1722 AATGGCGAATATCAGGAAAGAGGCTAGAGGCCGTGAGTGCCAGGTTAGGCTTCCGGGTAT 1781 Query 36245 ATGCAATGGTAATCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGG 36304 || || || || ||||||| ||| ||||| |||||||| ||| | || |||||||| Sbjct 1782 CTGTAACGGCAACGCTGAAACCGTAGTGCTGGCCCATTACCGAATGTCCGGCATTTGCGG 1841 Query 36305 AACGGGAATGAAGCCTGACGACCTGATCGGCGCATGGGCTTGTAGCGCGTGTCACGATGA 36364 || |||||||||||||||||||| ||||||||||||||||| | |||||| || || Sbjct 1842 CACAGGAATGAAGCCTGACGACCTTTTCGGCGCATGGGCTTGTTCAGGGTGTCATGACGA 1901 Query 36365 AATCGACCGACGCACCC 36381 ||||||||| || |||| Sbjct 1902 AATCGACCGTCGAACCC 1918 >seq3093 Length=5473 Score = 120 bits (132), Expect = 8e-23 Identities = 322/486 (66%), Gaps = 15/486 (3%) Strand=Plus/Minus Query 15746 ACAATGCGCGTGAGCTGGGACCAGGCGCAGAACGCTATCGCCTATGAAGCGCAATGGCGC 15805 ||| |||| |||| ||||| | ||| | | ||| ||||| ||||||||||||||||| Sbjct 4642 ACATTGCGGGTGACGTGGGAGCGGGCTGAAAGCGCAATCGCGTATGAAGCGCAATGGCGA 4583 Query 15806 CGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCCACCACGTCATTCGACGTCCCG 15865 || | |||| |||||| | || | |||||||| ||| | | || || || | Sbjct 4582 CGTGATAACGGTAACTGGATAAATGCTCCGCGCACTTCCGCGCTGGGTTTTGAAGTATCT 4523 Query 15866 GGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCGCAATCAATGCCGCAGAAATTTCA 15925 || ||||| ||||||| || | || || || || || || ||||| || ||||| || Sbjct 4522 GGTATTTACGCCGGGCAATATCAGGCACGCGTCCGGGCTATTAATGCGGCTGAAATCTC- 4464 Query 15926 TCCGGATG-GGGCTATTCAGAAGAGAAAAC--GCTGACGGGTAAAGTGGGCAATCCACCG 15982 | | ||| |||| | | || |||| | ||| | || |||| ||| || || || Sbjct 4463 -CAGCATGTGGGCCAACGCGCAG-GAAACCCGGCTTAACGGAAAAGAGGGTAACCCGCCT 4406 Query 15983 AAGCCGGTTGGCTTTATCGCCTCTGAAAACGTGGTGTTCGGTATCGAGCTGAACTGGGGA 16042 || || | || || | || | | || ||||| ||| |||| |||||| | Sbjct 4405 GCGCTGGCGAGTTTCATTACAACTCCA---CTCGTTTTCGGCATCCAGCTTAACTGGAGT 4349 Query 16043 TTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTCAGTACAGCCTGACCGGGAGC 16102 ||||| || | || ||||| || ||||| || || |||||||| || ||| |||| Sbjct 4348 TTCCCTGCTGACACAGACGATACCCTGAAAACCGAGATTCAGTATTCCCCGAC---GAGC 4292 Query 16103 GAAG---ATGATGCCATTCTTCTGAGCGATGTTCCCTATCCGCAGCGCAAGTATCAGCAG 16159 || | | ||| | || |||| |||||| | || || |||| |||||| || Sbjct 4291 GACGGCCAGAATGTGTTGCTGCTGACCGATGTGGCTTACCCCACTCGCACGTATCAACAA 4232 Query 16160 ATGGGCCTGAAGGCGGGGCAAATTTTCTGGTACCGGGCGCAGCTGGTGGACAGGACAGGC 16219 ||||| || | | || || |||| ||||| || | | || |||| | ||||| Sbjct 4231 ATGGGGCTCAGTGTCGGCCAGGCGTTCTTTTACCGTGCCCGCATTGTTGACAAGTCAGGC 4172 Query 16220 AATGAG 16225 ||| || Sbjct 4171 AATCAG 4166 >seq2734 Length=2210 Score = 114 bits (126), Expect = 3e-21 Identities = 708/1117 (63%), Gaps = 32/1117 (3%) Strand=Plus/Minus Query 11298 CAGAAGCTCGAACCTGGCGATGTGGTCAGGCTTTTCGAAGTGGATGGCACGGCATTTGGT 11357 || || || || || |||||| || | || || ||||||||| |||| ||||||| | Sbjct 1423 CAAAAACTGGAGCCGGGCGATCGCGTGCGCCTGTTTGAAGTGGATTGCACTGCATTTGAT 1364 Query 11358 ACAGGTGATGTGCTGCGATTTCACAGCTACAGTCTTGCGCACTCTGAAGCCGAAATTATC 11417 || | || ||||| || | | | || ||| || || |||||| Sbjct 1363 ---GGCCCGGAATTGTATTTTCATAGTCATCCTATCGCCCACACTTCAGAGGAAATTGAG 1307 Query 11418 GCTGCTGGCGGTGATGAAAATAAACTGCCAGCAAAATCTATCTGGTGGCAGGGTGAGGAG 11477 || || || | |||||| || | | || ||||| ||||||||||||||| | || Sbjct 1306 GCGGCGGGTGACGATGAAGCAAAGATACTCGCCAAATCGATCTGGTGGCAGGGTAAAGAA 1247 Query 11478 TATAAAGCGTGGCCATGCCAGATTGAGGGGATCGAAGCTTCAACCTCGGGAAGTAGTGCC 11537 || ||||| ||||| ||| |||| ||| | ||| | | | || || | || Sbjct 1246 TACAAAGCCTGGCCCACGCAGGTTGAAGGGTTGGAAATGACCAGCGATGGCAGC-GCCCC 1188 Query 11538 CA-GCCAAAACTTTCGGTTGCTAACCTCGACAGTTCGATCACCGCGCTTTGCCTGGCTTA 11596 || ||| | ||| |||| | ||| |||| | | || || | ||| || |||||||| Sbjct 1187 CACGCCCACACTGGCGGTGGGTAATATCGATGGCACCATTACGGTGCTCTGTCTGGCTTA 1128 Query 11597 CGACGATATGCTGCAGGCGAAGGTGACGATACATGACACCCTTGGTAAGTATCTCGATGC 11656 | || || || || | |||| | || ||| ||| | ||||| ||||| Sbjct 1127 TCAGAATCTGGCACAAGCCACGGTGCGCGTTCACACCACGTTTGCCCACTATCTTGATGC 1068 Query 11657 GAGAAACTTCACCGGAGGCAAT-CCGACAGCCGATCCGACCCAGGAGAAGCTGAAGGTTT 11715 | | || ||| ||| ||| ||| ||||| |||||||| || |||||| | | |||| | Sbjct 1067 GCGTAATTTCCCCGAAGGTAATGCCGAC-GCCGATCCAACGCAGGAGCGGTTAGAGGTCT 1009 Query 11716 TCTACATCGAT-GCAAAGAGCAGTGAAAACAATGAAGTTGTTGAGTTCACACTATCCAGC 11774 || ||||| ||||| | || ||| | | ||| ||| |||| | | || | Sbjct 1008 GGTATATCGACAGCAAA-ACCACAGAAGATGACGAATCAGTTACCTTCAAATTGTCATCC 950 Query 11775 CCTATGGATCTGCAGGGGCTGATGATACCTACCCGCCAGCTTCATTCTCTGTGCACATGG 11834 || || ||||| || | ||||| || || | ||| | || |||||||| ||| Sbjct 949 CCGGCAGACCTGCAAGGCATCATGATCCCCACAAGGCAGATACACAGCCTGTGCACCTGG 890 Query 11835 TGCATCCGGAACAAGTACCGAACCGGCGACGGCTGCGACTATGCAGGTACGCGCTATTTC 11894 || || || |||| || ||| | ||| | |||| | || ||| |||||| Sbjct 889 TGTATGCGTGGTCAGTATCGGGG-GGCATC--CTGTGGCTATACCGGCACGAACTATTTT 833 Query 11895 GACAAAAACAACAACCAGGTAAGCGATCCGTCACTGGATGAATGCAACGGAACGCT---G 11951 || | | || | || ||||||| | |||||||||||| || ||| | Sbjct 832 GATGCAGAGGGTAATCCTGTTGACGATCCGGCGCTGGATGAATGCTCGGGGCTGCTATCG 773 Query 11952 ACGGCCTGCAAACTTCGGTTCGGTGAAAACAACGAACTCTCGTTTGGTGGGTTCCCGGGT 12011 || | ||| || || || || |||||| | ||| | |||| || || ||||| || Sbjct 772 ACCGGCTGTAAGCTGCGATTTGGTGAAGAGGCTGAATTGCCGTTCGGCGGTTTCCCCGGC 713 Query 12012 ACGTCGCTGATCAGGAGTTGATATGCG----TCAGAAAAC----CATCGATGCGATTATG 12063 | ||||||| | ||| ||| | | |||| ||| ||| || || || Sbjct 712 TCCGCGCTGATTAAGAGGTGAATAGTGAAACTCAGCAAATTAATCATTACTGAAATACTG 653 Query 12064 GCGCATGCTGCAGCT-GAATATCCTCGTGAGTGTTGCGGCGTGGTGGCGCAAAAGAGCCG 12122 || || || | ||| | ||||| || || || || | | ||| | |||| Sbjct 652 GCCCACGCCG-AGCACGTCTATCCGTACGAAGCATGTGGACTGATTGTGCAGAGCGGCCG 594 Query 12123 GGTAGAGAAATATTTTCCATGTAGTAACCTCGCTACCGAGCCGACAGAACATTTTCACC- 12181 | || || | | ||| | || | || |||||| ||||||||| ||| Sbjct 593 CAAACAGCGCTACGTGCGCTGTCGCAATCAGGCGCTGGAGCCGGAAGAACATTT-CACGA 535 Query 12182 TGTCGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACGGTGATCGCCATCGTTCACA 12241 || || || || || || | || ||||| | || || | || ||||| || |||| Sbjct 534 TGAACCCGGAGGATTACGCGGAAGCAGAGGATAGCGGGACCATCATTGCCATTGTCCACA 475 Query 12242 GTCACCCTGACGCCACTACGCAGCCGAGCGAACTGGATAAAGCGCAATGCGACGCAACGC 12301 |||| ||||| ||||| ||||| || || | | ||| | || |||| || | ||| Sbjct 474 GTCATCCTGATGCCACCACGCAACCCAGTCATGTTGATCAGGCCGAATGTGATGTGTCGC 415 Query 12302 TTTTACCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTTACGCACCATCCAGCCGCGCG 12361 |||| ||| ||| | || ||||||||||||||| | |||||||| ||| ||| Sbjct 414 AACTACCGTGGATTATCGCCAGTTGGCCGGAGGGGGATATTCGCACCATTATGCC-TGCG 356 Query 12362 GAG---AAC-TGCCACTGCTGGAGCGTCCGTTTGTGC 12394 ||| | | ||| || ||||||||||| ||||||| Sbjct 355 GAGGGTATCAAGCCGCTTCTGGAGCGTCCTTTTGTGC 319 >seq2972 Length=2207 Score = 113 bits (124), Expect = 1e-20 Identities = 280/424 (66%), Gaps = 12/424 (3%) Strand=Plus/Plus Query 14549 ATTTCATGCGAACCGCGCGGCCGCGTTATCCGCGTTCCAGATACCTACGACCCTGAAACC 14608 ||||| || || || ||| ||| ||||||| ||||| | || || || | | || Sbjct 1784 ATTTCCTGTGAGCCAGACGGGCGCATTATCCGTGTTCCCTCAAATTATGATCCGGTAGCC 1843 Query 14609 CGCACTTATAGCGGTACATGGACCGGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCG 14668 || ||||| ||||| |||||| ||| | ||||| ||||||| || |||| || || Sbjct 1844 CGTACTTACAGCGGGGCATGGAACGGCACCTTTAAATGGGCATTCACCAATAATCCGGCC 1903 Query 14669 TGGATTTTTTACGACCTGGTTGTTTCTGACCGGTTCGGCCTTGGGCACCGTTTGACCGCT 14728 ||| | | ||||||| | | || || || |||||||| |||| | | ||| Sbjct 1904 TGGGTGTATTACGACATCCAGATCAGCGATCGCTTTGGCCTTGGCAACCGCATCAAAGCT 1963 Query 14729 GCGAATATTGAT------AAATGGACGCTTTATCAGGTTGCTCAGTATTGTGATCAGATG 14782 | || || || |||||||| || ||| | || |||||||| || ||| || Sbjct 1964 GAAAACCTTTCCGTCTCGAAGTGGACGCTGTACCAGATCGCGCAGTATTGCGACCAGTTG 2023 Query 14783 GTACCAGACGGCAAAGGGGGCAATGGTACAGAACCACGTTATACCTGCAACGTGTACATT 14842 || || || || || || ||||| || |||||||||| | ||| | ||||| || Sbjct 2024 GTTCCTGATGGACGTGGCGGTAATGGCACTGAACCACGTTTTTTATGCGATGTGTATATC 2083 Query 14843 CAGGACCGGAACGACGCCTACACAGTCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATG 14902 ||| | | | || |||| || || || ||| | ||||| || || || || Sbjct 2084 CAGTCGCAGGAAGAAGCCTGGACCGTGCTTAACGATCTGGCCGCCATTTTTCGCGGTGCT 2143 Query 14903 ACCTACTGGGGCGGGGATCAGAT---TGTGGCCCTGGCTGACATGCCGCGCGATGTTGAT 14959 || | ||||||| | ||||| |||| | || ||||||||||| || ||||| Sbjct 2144 ACGTTCTGGGGCAATAACCAGATGAATGTGATC---GCCGACATGCCGCGTGACATTGAT 2200 Query 14960 TACA 14963 |||| Sbjct 2201 TACA 2204 >seq2902 Length=7946 Score = 91.5 bits (100), Expect = 4e-14 Identities = 232/348 (67%), Gaps = 4/348 (1%) Strand=Plus/Minus Query 22182 TATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTCCTCGAAAAGGCCATGACAACGTA 22241 |||| | || ||||||||||| || || || || | || |||| | ||| | || Sbjct 394 TATCAGGCGACCAATCTTCGACCAGATAAAACCAATTCTGGAAAGGTTGATGGATGCCTA 335 Query 22242 CAATGATGTTCTTTTCCCTGGAGAA-GACATAAACAAACCGATCAGCATCGCTGCAGCCA 22300 | ||||| |||||||| || || ||| | | || || | ||||| || || | Sbjct 334 CGGGGATGTCCTTTTCCCCGGCCAACGACTTTCTGAG-CCAATGACAATCGCAGCCGCAA 276 Query 22301 ACCGATTCGTAAATAGAATAAGGGGAGGGATGGATCTAGGTTACTGGCGAACACACGATT 22360 || ||||| | | | | | | ||| |||||| | || |||||| || | ||||||| Sbjct 275 ACAGATTCATTATCCGGCTGCGTGAAGGCATGGATTTGGGGTACTGGAGAGCGCACGATT 216 Query 22361 TCAGAAGAACGCTTGTTACACGTCTGTCCGA-GATGAATGTCGAGCCTCATGTTACTGAG 22419 |||| | |||| || | || || || || | | || ||| || || |||||| Sbjct 215 TCAGGCGTTCGCTATCAACCAGACTATCAGAGGAAGGA-GTTCCGCCGCACGTCACTGAG 157 Query 22420 CGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTGTACAATAAACACGACTGGATA 22479 ||||| |||||||| |||||||| ||||| | |||||||| || || || ||| | Sbjct 156 AAGATGCTGGGTCATGAGCTTGGCGGTGTAATGGCGGTGTACAACAAGCATGATTGGCTG 97 Query 22480 GAGGCTCAGCGCAAAGCGTATGAGCTTCACGCTGATAAATTGTTCTGG 22527 | | || |||| || || || | ||||||||| | |||||| Sbjct 96 AAAGAGCAAAAAGAAGCATACGAACTGTATGCTGATAAAATTTTCTGG 49 >seq3877 Length=2667 Score = 87.8 bits (96), Expect = 5e-13 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 10361 GACATGCTCAACGGCAATAAAGCGAGCTGGAAAGACTGGGGTGTCAGTGTTCTGAAAATC 10420 || |||||||| || ||| || ||||||||||||||||| || ||||| |||||| Sbjct 171 GAAATGCTCAATGGTAATGTTAATAGTTGGAAAGACTGGGGTGTTAGCGTTCTTAAAATC 112 Query 10421 ATCGAACAGGTGATGGTTAACATGATGATCGCCAATGCAGCCAGCTCGATAGG 10473 || || | || ||||| || |||||| ||||||| || ||||| || || || Sbjct 111 ATTGAGAACGTCATGGTAAATATGATGGTCGCCAACGCTGCCAGTTCAATCGG 59 >seq3821 Length=1769 Score = 80.6 bits (88), Expect = 7e-11 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 35659 TTCGAAGGCGAACAAGGTAAGCGAGATAGTATTGTTGTTGTTGCCCAGTTGTCGCCAGAG 35718 || || |||||||| |||||||| ||||| ||| | || || || || | | || ||| Sbjct 1315 TTTGAGGGCGAACAGGGTAAGCGCGATAGCATTATCGTCGTCGCTCAACTCTGCCCTGAG 1374 Query 35719 TTCACCGCTCGCCTTGTTGACCGCTGGCGAGATCTTGAAGAA 35760 |||||||| || || ||||||||||||| ||| || ||| || Sbjct 1375 TTCACCGCCCGTCTGGTTGACCGCTGGCAAGAGCTGGAAAAA 1416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130144267313152