Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq2639 324 4e-84 seq2494 199 1e-46 seq2562 168 2e-37 seq2992 113 1e-20 seq3821 107 6e-19 seq3556 105 2e-18 seq3690 102 2e-17 seq3702 89.7 2e-13 seq3193 80.6 8e-11 >seq2639 Length=1078 Score = 324 bits (358), Expect = 4e-84 Identities = 387/518 (75%), Gaps = 7/518 (1%) Strand=Plus/Plus Query 42079 GAACTAAACCTCACCAAAGAACAGCAGGAGTGGCTGAATGGCTGGCTTGAACTGTGGGGC 42138 ||||| || ||||| | || ||||| ||| | | || ||| | ||| | |||||| Sbjct 429 GAACTTAAACTCACGGATGACCAGCATCGATGGATTGAAGGGTGGTTAGAATTATGGGGC 488 Query 42139 GCATGGGTTTATTCAGGTCGTCTTGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATG 42198 || |||||||||||||| | || || ||||| ||||||||||| ||| |||||||| Sbjct 489 GCGTGGGTTTATTCAGGGAGGCTAGAGAAGCGGCAAAGCAGCGTAATTGCGCAGTTCATG 548 Query 42199 GAGAGCGTAGAGCCGGGAAGAGTTATGACAAGGCCAATGTGCAACGATGATGATGGAATG 42258 ||||| |||||||| || || || |||| ||||| ||||||||||||||||| || ||| Sbjct 549 GAGAGAGTAGAGCCAGGCAGGGTGATGAGTAGGCCCATGTGCAACGATGATGACGGGATG 608 Query 42259 TTGATTTCTCAGGTCGTCGATTCCGTCATGTACATTGACAAGAAAGCCTTTGGCATCCTC 42318 |||||||||||||||||||||||||||||| |||||||| | | | || || || Sbjct 609 TTGATTTCTCAGGTCGTCGATTCCGTCATGCGCATTGACACAAGGTCGCTCGGTATTCTT 668 Query 42319 CTCAGCTACTACGCTCATGGTTCATCTAAGCGAGCAATTGCATCCTACTATCACGCGACT 42378 ||||||||||||||||| || ||||||||||||||||||||||| ||||||||| | Sbjct 669 CTCAGCTACTACGCTCACGGATCATCTAAGCGAGCAATTGCATCGTACTATCACAAAGCC 728 Query 42379 GCAAAGCCACGCAAGAT-GTGTGGACGTGGT--GGCGAGGGATGGAGAAAACCTTCACTG 42435 |||| ||||||||| || | || | | | || ||||| ||| | || || ||| | Sbjct 729 GCAAGGCCACGCAAAATCGACAGGGGGAGATTGGGTGAGGGGTGGCGTAAGCCGTCAGAG 788 Query 42436 GCAAC-CTGTAGAAACGAAATTGACGACATCCTGAAAGCGTCGTTATTTGTTTTGTACCA 42494 | | | ||| || || || ||| | || ||| | || || | | | || | ||| Sbjct 789 GAAGCGCTG-AGGAAAGAGATTTCACAGATACTGGAGGCTACGCTGTATATTCTCTACAC 847 Query 42495 GCCAATGCAAAATGCTTTCAAAATGCGTAAACGTGTTGAGAAAGTTAAGCATGTTGCTGT 42554 || ||| |||||| || |||| |||||| |||| | |||| |||| |||||||| | Sbjct 848 TCCGCTGCGAAATGCGTTTAAAAGTCGTAAAAGTGTGGCGAAAATTAAACATGTTGC-AT 906 Query 42555 TAAAATCCTTGACATGCAATTATCCATTTAGCCATAAT 42592 ||| |||||||| | ||| ||||||| ||||||| Sbjct 907 GAAAGGACTTGACAT-CTTTTACCCATTTACCCATAAT 943 >seq2494 Length=1509 Score = 199 bits (220), Expect = 1e-46 Identities = 281/395 (71%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 41236 ATGGCTAACCTACGCAAAGAAGCACGCGGCAGAGAATGTCAGGTACGTATTTACGGCGTA 41295 ||||| || || | ||||| || | || |||| |||||||| | | | || | Sbjct 795 ATGGCGAATCTTAGAAAAGAGGCCAGAGGTCGAGAGTGTCAGGTGAGGCTCTCGGGTATC 736 Query 41296 TGCAATGGCAATCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGGA 41355 || || ||||| ||||||| ||| ||||| |||||||| ||| | || |||||||| Sbjct 735 TGTAACGGCAACGCTGAAACCGTAGTGCTGGCCCATTACCGAATGTCGGGCATTTGCGGC 676 Query 41356 ACGGGAATGAAACCTGACGACCTGATCGGCGCATGGGCTTGTAGTGACTGCCACGCGGAG 41415 || |||||||| ||||||||||| | ||||||||||| ||| || ||| |||| || Sbjct 675 ACAGGAATGAAGCCTGACGACCTTTTTGGCGCATGGGCCTGTTCTGCCTGTCACGACGAA 616 Query 41416 ATCGACCGGCGCACCCATAACCTCGACAACAAAGACGCCAGACTTTACCACCTCGAAGGC 41475 || ||||| ||||| | || | ||| | | | ||| | || | || || |||||| Sbjct 615 ATAGACCGCCGCACGCGTATCACCGATGCCGACTATGCCCGGCTGCATCATCTGGAAGGC 556 Query 41476 GTGATCAGGACGCAGGCGATACTGCTGAAGGAGGGGAAGATTAAGTCATGAACGAATATC 41535 || ||| | || |||||||| | ||| | |||||||||||||| ||||||||||||| Sbjct 555 GTCATCCGCACACAGGCGATTTTACTGGCGCAGGGGAAGATTAAGCGATGAACGAATATC 496 Query 41536 AGTTTGTGCTTCCGTACCCACCGTCGCTGAATACCTACTGGCGAAGAAGGGGAAGCCAAT 41595 | | || || || ||||| ||| | || |||||||||||| || | Sbjct 495 ACCTGAAACTGCCATATCCACCATCGTTAAACACCTACTGGCGACACGCACGACATCGGC 436 Query 41596 ACTACATCAGCGATAAAGGCCAGAAATACCGAAAA 41630 ||||||||||||| |||||| | ||||||| || Sbjct 435 ACTACATCAGCGAGAAAGGCAAAGCATACCGACAA 401 >seq2562 Length=1341 Score = 168 bits (186), Expect = 2e-37 Identities = 183/240 (76%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 38638 GGCATGATTCTGGTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGAC 38697 ||||||||| || ||||||||||| || ||||| | || || |||||| ||| | Sbjct 459 GGCATGATTGGCGTGGATTACCTGACGCTGATGACGACCGATAAAGCCGATACCAATGCG 400 Query 38698 CTTGCTTACGGCATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTT 38757 || || | |||| |||||||| | ||||||||||||||||||||||| ||| ||| Sbjct 399 CTGGCGTTTGGCAATATCACCAAGGCGCTGAAGAACCTTGCCAAAGAGCTGGATACCGTC 340 Query 38758 GTTGTGCTTCTGACGCAGCTTAACCGCGCACTGGAA-AGCAGAACCAATAAACGCCCATT 38816 || ||||| ||||| ||||| |||||| |||||| ||| | |||| |||||||| | Sbjct 339 GTGGTGCTACTGACCCAGCTAAACCGCAATCTGGAAGAGC-GCGCCAACAAACGCCCCAT 281 Query 38817 ACCAAGTGACTCACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 38876 || |||||| || || | || |||||||| |||||||| ||||||||| |||| || Sbjct 280 GCCCAGTGACAGCCGGGAAAGTGGTCAGATTGAGCAGGATTGTGATTATTGGTTGGGTAT 221 >seq2992 Length=1942 Score = 113 bits (124), Expect = 1e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 41235 AATGGCTAACCTACGCAAAGAAGCACGCGGCAGAGAATGTCAGGTACGTATTTACGGCGT 41294 |||||| || | | ||||| || | ||| | || || ||||| | || || | Sbjct 1722 AATGGCGAATATCAGGAAAGAGGCTAGAGGCCGTGAGTGCCAGGTTAGGCTTCCGGGTAT 1781 Query 41295 ATGCAATGGCAATCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGG 41354 || || ||||| ||||||| ||| ||||| |||||||| ||| | || |||||||| Sbjct 1782 CTGTAACGGCAACGCTGAAACCGTAGTGCTGGCCCATTACCGAATGTCCGGCATTTGCGG 1841 Query 41355 AACGGGAATGAAACCTGACGACCTGATCGGCGCATGGGCTTGTAGTGACTGCCACGCGGA 41414 || |||||||| ||||||||||| ||||||||||||||||| | || || | || Sbjct 1842 CACAGGAATGAAGCCTGACGACCTTTTCGGCGCATGGGCTTGTTCAGGGTGTCATGACGA 1901 Query 41415 GATCGACCGGCGCACCC 41431 |||||||| || |||| Sbjct 1902 AATCGACCGTCGAACCC 1918 >seq3821 Length=1769 Score = 107 bits (118), Expect = 6e-19 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 40709 TTTGAGGGCGAACAAGGTAAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCGCCGGAA 40768 |||||||||||||| |||||||| || |||||||| ||||||||||| | | || || Sbjct 1315 TTTGAGGGCGAACAGGGTAAGCGCGATAGCATTATCGTCGTCGCTCAACTCTGCCCTGAG 1374 Query 40769 TTCACCGCTCGTCTTGTTGACCGTTGGCGAGAGCTTGAA 40807 |||||||| ||||| |||||||| |||| |||||| ||| Sbjct 1375 TTCACCGCCCGTCTGGTTGACCGCTGGCAAGAGCTGGAA 1413 >seq3556 Length=1052 Score = 105 bits (116), Expect = 2e-18 Identities = 182/261 (70%), Gaps = 15/261 (6%) Strand=Plus/Minus Query 40547 ATGACAAGCATTGAAATCGCTGAGTTGGTGGGAAGTCGTCATGACAAGGTGAAACAATCT 40606 ||| | |||||||||||||| ||| |||| || || |||||||| || || ||||| Sbjct 365 ATGTCCAGCATTGAAATCGCGGAGCTGGTTAAGAGCCGCCATGACAAAGTAAAGCAATCG 306 Query 40607 ATTGAACGACTGGCGGCTCGAGGTGTGATCCGAAATCCCCCAATGGTGGTTTTCGAAAAA 40666 || ||||| || || | || ||||| ||| |||||||||| || |||| Sbjct 305 ATAGAACGCCTTGCTGAACGCGGTGTTATCACTTTACCCCCAATGGGGG-------AAAA 253 Query 40667 ATCAATAACTTAGGATTACTTCGTGGCGTAGAGGCTTACGTTTTTGAGGGCGAACAAGGT 40726 | | | ||| | | || | || ||| | |||||||| ||||| || Sbjct 252 GCCCACGGC--AGG----CCGCCCAACG-ACAGT-TTATATGTTTGAGGGAGAACAGGGG 201 Query 40727 AAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCGCCGGAATTCACCGCTCGTCTTGTT 40786 ||||| || |||||||| ||||||||||| | | || || |||||||| ||||| ||| Sbjct 200 AAGCGCGATAGCATTATCGTCGTCGCTCAACTCTGCCCTGAGTTCACCGCCCGTCTGGTT 141 Query 40787 GACCGTTGGCGAGAGCTTGAA 40807 ||||| |||| |||||| ||| Sbjct 140 GACCGCTGGCAAGAGCTGGAA 120 >seq3690 Length=4460 Score = 102 bits (112), Expect = 2e-17 Identities = 395/604 (65%), Gaps = 24/604 (4%) Strand=Plus/Plus Query 21756 GCATTTAACTATATTGTGAGGCTTGCATAATGGCATTCAGAATG---AGTGAACAACCAC 21812 || ||||| ||||| |||||||||||||||||| || ||| |||||| | | Sbjct 2830 GCTTTTAATTATATAGTGAGGCTTGCATAATGGATTTTGAAATATCCAGTGAAGCAAAA- 2888 Query 21813 GGACCATAAAAATTTATAATCTGCTGGCCGGAACTAATGAATTTATTGGTGAAGGTGACG 21872 ||||| || ||||||||||| | || | || || ||||||||||||| || || | Sbjct 2889 --ACCATTAAGATTTATAATCTCCACGCTGATACAAAGGAATTTATTGGTGCTGGAGATG 2946 Query 21873 CATATATTCCGCCTCATACCGGTCTGCCTGCAAACAGTACCGATATTGCACCGCCAGATA 21932 | |||||||| ||||| || || | || ||| | |||| | ||||| ||||| | Sbjct 2947 CTTATATTCCACCTCACACAGGGTTACCGGCACTCTGTACAACAACCGCACCACCAGAAA 3006 Query 21933 TTCCGGCTGGCTTTGTGGCTGTTTTCAACAGTG-ATGAGGCATCGTGGCATCTCGTTGAA 21991 | | || | | ||| |||||||| ||| ||| | || ||| | || ||| Sbjct 3007 TCCTGGTCGACCATGTTGCTGTTTTTAAC-GTGCAAGAACAGATTTGGGTACAGGTAGAA 3065 Query 21992 GACCATCGGGGTAAAACCGTCTATGACGTGGCTTCCGGCGACGCGTTATTTATTTCTGAA 22051 || ||||| || |||| ||||||||| | | || | || | | || | | Sbjct 3066 GATCATCGAGGAGAAACTGTCTATGACAAAACGACAGGGAATGCTATTCTAATCACAAAG 3125 Query 22052 CTCGGTCCGTTACC--GGAA--AATTTTACCTGGTTATCGCCGGGAGGGGAATATCAGAA 22107 | || ||||| | | || | | | | | | | || || ||||| | || Sbjct 3126 ATTGGATCGTTATCTAGCAACGAGGTGTGCATTG----CACCTAATGGAAAATATGAAAA 3181 Query 22108 GTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAAC-TGTTCCGGATCCGGG 22166 |||||||| | | |||||||| || | || || |||||| || || ||| | Sbjct 3182 ATGGAACGGTAAGGTTTGGGTGAAAGACAAGGTTGCGGAAAAAAATGCTCAT-ATCATAG 3240 Query 22167 AGGCGGAAGAAACaaaaaaa-aGCCTGATGCAGGTAGCCAGTGAGCATATT-GCGCCGCT 22224 | || || | || ||||| | || || | |||| | || || | || |||| Sbjct 3241 AAGCAAAA-ACTCAGAAAAATAATATGCTGATGATAGC-ACACAGTATGGTAGCTACGCT 3298 Query 22225 TCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAACCTCGTTGCTGGAAGCCTG 22284 ||||||||| ||| || ||||| ||||| || ||||||||||| || | ||| Sbjct 3299 AGAGGATGCTGTAGAACTTGAAATAGCAACTGACGAAGAAACCTCTAAACTCCCCGTCTG 3358 Query 22285 GAAGAAGTATCGGGTGTTGCTGAACCGTGTTGATA-CATCAACTGCACCTGATATTGAGT 22343 ||| || || || ||| || | |||||||| |||| || | ||||| || ||||| || | Sbjct 3359 GAAAAAATACCGCGTGCTGATTAACCGTGTCGATATCAGC-ACTGCGCCGGATATCGACT 3417 Query 22344 GGCC 22347 |||| Sbjct 3418 GGCC 3421 >seq3702 Length=11964 Score = 89.7 bits (98), Expect = 2e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38650 GTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGC 38709 || ||||| || || || ||| || ||| ||| || ||| ||| | ||| ||| Sbjct 5906 GTTGATTATCTCACCCTGATGCGCGGTGAAGCGGCAGAGCGCCGCGATATCAGTTATGGC 5965 Query 38710 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTG 38769 |||||||| || || || || || || ||||| || |||||| | || |||| || Sbjct 5966 GCGATCACCACCGGGCTTAAAAATCTGGCGAAAGAACTGGATTGCATCGTGCTGCTGCTT 6025 Query 38770 ACGCAGCTTAACCGCGCACTGGAA-AGCAGAACCAATAAACGCCCATTACCAAGTGACTC 38828 || ||||| ||||| | | |||| ||| | || | |||||||| |||||| |||| Sbjct 6026 ACCCAGCTAAACCGTGGATTGGAGCAGC-GCGCCGACAAACGCCCTTTACCATCTGACAG 6084 Query 38829 ACGAGATACAGGGCAGATTGAACAGGATTGCGA 38861 ||||| ||||| || || ||||||||||| Sbjct 6085 TAAGGATACCGGGCAAATCGAGCAGGATTGCGA 6117 >seq3193 Length=7383 Score = 80.6 bits (88), Expect = 8e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 22190 CTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATT 22249 ||||||||| | ||||| ||| || || || |||||||| |||||||| || | Sbjct 623 CTGATGCAGATGGCCAGCATCGCTATCGCCCCACTACAGGATGCAGCAGATCTCGATCTG 682 Query 22250 GCAACGGAGGAAGAAACCTCGTTGCTGGAAGCCTGGAAGAAGTATCGGGTGTTGCTGAAC 22309 || ||||||| ||||| || ||| | || |||||||| || || |||||||||||| Sbjct 683 GCCACGGAGGCAGAAAGGGCGCAGCTTGTCGCGTGGAAGAAATACCGTGTGTTGCTGAAC 742 Query 22310 CG 22311 || Sbjct 743 CG 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151192875456000