Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019720.1 Length=44120 Score E Sequences producing significant alignments: (Bits) Value seq3629 232 2e-56 seq3336 183 9e-42 seq3868 159 1e-34 seq3174 131 5e-26 seq3134 104 7e-18 seq2972 84.2 6e-12 seq2494 82.4 2e-11 seq3569 80.6 8e-11 seq3098 80.6 8e-11 >seq3629 Length=1790 Score = 232 bits (256), Expect = 2e-56 Identities = 221/283 (78%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 28291 ATCCATCCCTTTCTTGCTTTCTTCCTCTCGTGCAAGAGCGGTTGCCGTATGACTGTTTTC 28350 |||||| ||||||||||||||||| || | ||| | || ||||| | |||| | |||| Sbjct 59 ATCCATGCCTTTCTTGCTTTCTTCTTCCCTTGCCATTGCTGTTGCTGAATGAGTACTTTC 118 Query 28351 GCCATCGGTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTC 28410 |||||||||||||||||||||||||| |||||||| | || ||||||| || || || Sbjct 119 CCCATCGGTAATAGTTGCCGTGGCTTTGACGTAATATCTATTCCCAATCATTACGACATC 178 Query 28411 ATCGCTGATTGATAAAAACAGGCCATTCAGTAACGGCTTAACGCCTTCAAGAATGTCTTC 28470 ||| | || || | ||| || || |||| ||| ||||| || || || | || ||||| Sbjct 179 ATCACATATCGAAAGAAATAGACCTTTCAATAAAGGCTTTACTCCCTCCAATATATCTTC 238 Query 28471 GCAGCTTCTGTATTTATATTTTCCGAATGAGTTGTACTGATTCTTTGGCGCGTTCAGATT 28530 ||| ||||||||||||||||| || |||||||| | || || ||||| ||||| || || Sbjct 239 GCAACTTCTGTATTTATATTTACCAAATGAGTTAAATTGGTTTTTTGGGGCGTTAAGGTT 298 Query 28531 TTCCTGAATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCATA 28573 || ||| || |||| || || |||||||||||| |||||| Sbjct 299 TTTCTGGATTTCTGCTAGCCTCAGGTAAAATTCTTTACTCATA 341 >seq3336 Length=1822 Score = 183 bits (202), Expect = 9e-42 Identities = 299/431 (69%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 7974 AAAGGTGCCGGTACCACACTCTGGCTTTACACCGGAACGGGCAACGCTTTCGCTAACCCA 8033 |||||||| || ||||| || ||| ||| ||||| || ||| || ||| || |||||| Sbjct 1292 AAAGGTGCAGGAACCACGCTTTGGGTTTTTACCGGCACCGGCGACCCTTATGCAAACCCA 1351 Query 8034 CTCTCGGATATCGACTGGAACCGCCTGGCGAAAATTAAAGAGCTGACGCCGGGCGAAATG 8093 || | || |||| ||| |||||| | | |||||||||||||||||||| ||| Sbjct 1352 ACGGGCGACAGCGGTTGGACCCGTCTGGCGCAGGTCAAAGAGCTGACGCCGGGCGAGATG 1411 Query 8094 ACCGCAGAATCGTATGACGACACTTACCTCGACGACGAGGATGCCGACTGGAACGCGACG 8153 || || ||||| | || |||| || || |||| || | |||| |||| || ||| Sbjct 1412 ACGGCGGAATCCTTCGATAACACCTATCTGGACGGTGAAAACGCCGGGTGGAGCGATACG 1471 Query 8154 GCCCAGGGGGCAAAATCTGCTGGCGATACCTCGTTCACCCTCGCCTGGAAGCCGGGCGAA 8213 || ||||| ||||| || || || ||| |||||||| || ||||| | ||||| Sbjct 1472 GCACAGGGCATCAAATCCGCGGGGGACACCAGTTTCACCCTGGCATGGAAAGCCGGCGAT 1531 Query 8214 GAAGGGCAAAAAGACCTTGTCGCATGGTTTATTGATGGCTCAGTACGTTATTACAAAATC 8273 ||||| | || || || | ||||||| || | || || ||||||||| Sbjct 1532 CTGGGGCAGCAGGAACTGGTGGATTGGTTTACCTCCGGTGCCGTGCGCGGCTACAAAATC 1591 Query 8274 AAATACCCGAACGGTACCGTCGACGTTTTCTGTGGCTGGTGCAGCAGCCTGGGTAAAGCC 8333 || || | ||||| | || || || || |||||| ||| | || ||| | Sbjct 1592 AAGTATGCCAACGGCGCAGTTGATGTGTTTAAGGGCTGGGTCAGTGCGTTAGGAAAATCT 1651 Query 8334 ATTCCGGCAAAAGAGGTCATTACCCGTACAGCGAAAATCACCAATACCGGCAAGCCGGAA 8393 ||||| | || || || || ||||| || ||||| ||||||||||||||||||||| | Sbjct 1652 ATTCCTGTTAAGGAAGTGATCACCCGCACCGCGAAGGTCACCAATACCGGCAAGCCGGTA 1711 Query 8394 CTGGCAGAAGA 8404 |||| ||||| Sbjct 1712 TTGGCGGAAGA 1722 >seq3868 Length=9451 Score = 159 bits (176), Expect = 1e-34 Identities = 398/591 (67%), Gaps = 15/591 (3%) Strand=Plus/Minus Query 22042 CGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAAT-CAATGAGTTAC-CTCG 22099 || ||||| ||||||||| |||||| | |||||||||| ||||| |||| || Sbjct 1393 CGTAGGTCATAGGTTCGAATCCTATAGGGCGTACCATTTAAAAACAATGGGTTATGCTAA 1334 Query 22100 CATTTAAGTAAACCACGTTCTCCTCTTGTGCCGTATTTGTGCCATTGCGACTTATAATCG 22159 | || || ||| || || |||||| |||||||||| | || | || || || | Sbjct 1333 C-TTCAAACCTACCTGATTTTCACCTTGTGTCGTATTTGTGTCGTTACTACCTAAAAGTG 1275 Query 22160 CATCGATTTTGCTCGCGTGCTCGGTGAGATGCCCGGCTGAAAGGTGGGCGTATCTTTGAA 22219 | ||||| | ||| || ||||| || || | || ||||| || || || | | Sbjct 1274 AGCCAATTTTACGCGCATGTTCGGTCAGGTGGTTAGGTGCCAGGTGTGCATACCTACGGA 1215 Query 22220 CCATTTCGAGAGTTTCCCATCCTCCCATCTCTTTAAGTGCAAGAAGAGAGACACCGGACT 22279 ||||||||| || |||||| |||||||| || | | ||| ||| | || || |||| Sbjct 1214 CCATTTCGATAGATTCCCACCCTCCCATTTCCTGCAAAGCAGAAAGTGGAACGCCAGACT 1155 Query 22280 GAACCAGCCAGCTTGCCCAAGTATGCCTCAGGTCATGGAAGCGGAAGT-TGCTAATGCCT 22338 ||| || |||||| ||||| || |||| || || ||||||||||| | | || || || Sbjct 1154 GAATCAACCAGCTCGCCCATGTGTGCCGCAAATCGTGGAAGCGGAAATCTTCT-ATACCA 1096 Query 22339 GCCCGCTTTAA---CGCTCCCTTCCATGCCTTGTTGCTGTCGGTTCTCATCTTCCTTATC 22395 ||||| ||||| || ||| |||||| | || ||| | ||| || | ||| Sbjct 1095 GCCCG-TTTAAGTCCGATCC--GCCATGCGCTATTATCGTCACACCGCATTTTACGTATA 1039 Query 22396 GCTGCTGTTTTTGTTCCGTC-GCT-TCGGTAGGCAGGTTTGGTGTGGACAAACACCCATC 22453 | | || || || ||||| ||| ||| | || | |||||||||||||| |||||| | Sbjct 1038 TCAGGCGTCTTGGTGCCGTCTGCTCTCGTT--GCCGCTTTGGTGTGGACAAGCACCCAGC 981 Query 22454 TCTTATGGAGCCCCTGCTGTTTTCTTAATATCTGGCATGCGGTTTCGTTAAGAGGAACTC 22513 || || ||||| | | | || |||||| || || || |||| || | Sbjct 980 GAGAGTGCTTTCCAATCTGTTCCTTCAGCACCTTGCATGCCGTATCATTCAGAGCCACGC 921 Query 22514 CGATCGCATTGCCAGCTTTTGTTTCATCAGGGTGCATCCATGCCATTTTCTTATCCAGAT 22573 | || || || || ||||| | | || || | ||||| || | || | | || || Sbjct 920 CAATAGCCTTTCCCGCTTTGGCGTTCTCTGGATTTATCCAGGCAACCTTTCTCTGCATAT 861 Query 22574 CGACCTGTGACCACTCAAGGTCTGTAACGTTGGAACGGCGAAGGCCTGTCG 22624 | ||||| ||||||| || || ||| ||| |||||||| | || |||| Sbjct 860 CAACCTGCAACCACTCGAGATCGATAATGTTTGAACGGCGTAACCCAGTCG 810 Score = 93.3 bits (102), Expect = 1e-14 Identities = 167/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 23013 CTTGTCATCATCAA---TGGACTTCTTATCCGATTTCTCACGCAGCCACCGTATACAGGC 23069 |||||||||||||| || ||| | ||| |||||| |||||| || || || || Sbjct 418 CTTGTCATCATCAAGGCTGCGCTTGTGCTCC---TTCTCATCCAGCCATCGCATGCATGC 362 Query 23070 TTCCTTGAATAGCTTTTTCGGTGATTCCCCGAGATTTTTTACTCTCCACGCTTCTGCTTT 23129 || | ||| | || ||| | ||||| | | | | || ||| ||||| | ||| Sbjct 361 CTCTTCAAATGACCGTTGCGGCAAATCCCCTAATTCCTCAATTCGCCATGCTTCCGATTT 302 Query 23130 CAGACGATCGTGAAGTTCTTGCGCTTGCCTTTTGTCCGATGTTTCAAGAGAGCGTCTAAC 23189 || || ||||| || || || |||||| ||||||||| ||| | ||| || | ||||| Sbjct 301 CAATCGGTCGTGCAGCTCCTGTGCTTGCTTTTTGTCCGCTGTATTAAGCGATCTCCTAAC 242 Query 23190 TCTTGATCCATCTGGCGCGACGAAATCACAGTGCCACGTGCCACCGCGTAGTTTGATTGA 23249 |||| |||| || | | ||||| ||||||||| || || | || ||||||| Sbjct 241 TCTTTTGCCATTCGGGGTAAAGAAATGACAGTGCCATACCCCGCCTCTGAGGGTGATTGA 182 Query 23250 CAT 23252 ||| Sbjct 181 CAT 179 >seq3174 Length=2500 Score = 131 bits (144), Expect = 5e-26 Identities = 389/586 (66%), Gaps = 18/586 (3%) Strand=Plus/Minus Query 22046 GGTCGTAGGTTCGACTCCT--ATTATCGGCACCATTTAAATCAATGAGTTACCTCGCATT 22103 ||||| |||||||| ||| | | | ||||| | ||||| | |||| ||||||| Sbjct 685 GGTCGCAGGTTCGAACCCTGCACGACC--CACCAACAATATCAAGCATTTACATCGCATT 628 Query 22104 --TAAGTAAACCACGTTCTCCTCTTGTGCCGTATTTGTGCCATTGCGACTTATAATCGCA 22161 | | | ||| || ||| ||||||||||||||||||||| || | || || Sbjct 627 CTTTATTTCCCCAA-TTATCC-CTTGTGCCGTATTTGTGCCAT-GCTTGGCAAAAATGCT 571 Query 22162 -TCGATTTTGCTCGCGTGCTCGGTGAGATGCCCGGCTGAAAGGTGGGCGTATCTTTGAAC 22220 || |||| | |||| | || | ||| | || || || || ||||| | || Sbjct 570 GTCTATTTGTTTTGCGTATTGAGTTAAATGATTTGGCGACAGATGTGCATATCTGCGTAC 511 Query 22221 CATTTCGAGAGTTTCCCATCCTCCCATCTCTTTAAGTGCAAGAAGAGAGACACCGGACTG 22280 |||||| | | ||||| || ||||| |||| | |||| | || || ||||| || Sbjct 510 CATTTCTATTGACTCCCAACCGCCCATTTCTTGTAATGCAGATAAAGGAACGCCGGATTG 451 Query 22281 AACCAGCCAGCTTGCCCAAGTATGCCTCAGGTCATGGAAGCGGAAGTTGCTAATGCCTGC 22340 ||| ||||| || ||||| ||||| | || ||||| ||||| ||||| ||| || || Sbjct 450 AACTAGCCAACTCGCCCATGTATGTCGCAAATCATGAAAGCGAAAGTTTTCAATTCCGGC 391 Query 22341 CCGCTTTAACGCTCCCTTCCATGCCTTGTTGCTGTCGGTTCTCATCTTCC---TTATCGC 22397 || ||||| || | ||||| ||||| || | ||| ||| | ||| | || | | Sbjct 390 CCTTTTTAATGCAGCATTCCAAGCCTTATTTCCGTCAACTCTTAACTTTCGAATTTTAG- 332 Query 22398 TGCTGTTTTTGTTCCGTCGCTTCGGTAGGCAGGTTTGGTGTGGACAAACACCCATCTCTT 22457 || ||||| | | | || || | || | | ||| ||||| ||||| | || Sbjct 331 -GCATTTTTTCACCATTAGGTTTTGTCGT-AGATATTTCGTGAACAAATACCCAACGGTT 274 Query 22458 ATGGAGCCCCTGCTGTTTTCTTAATATCTGGCATGCGGTTTCGTTAAGAGGAACTCCGAT 22517 ||| || ||| | |||| ||| || || ||||| |||| ||| ||||| Sbjct 273 ATGTTTTCCTATCTGCCCGCGCAATACTCCGCACGCCGTATCGTTCAGAGCAACGCCGAT 214 Query 22518 CGCATTGCCAGCTTTTGTTTCATCAGGGTGCATCCATGCCAT-TTTCTTATCCAGATCGA 22576 ||| || ||| |||| | | || || | ||||| |||| |||||| | || || | Sbjct 213 CGCCTTTCCACCTTTGGCGTTTTCTGGATTAATCCACTCCATCTTTCTT-TGCATGTCCA 155 Query 22577 CCTGTGACCACTCAAGGTCTGTAACGTTGGAACGGCGAAGGCCTGT 22622 |||||||||| |||||||| || ||| || ||||| ||||| || Sbjct 154 CCTGTGACCATTCAAGGTCAAGAATGTTAGAGCGGCGCAGGCCGGT 109 >seq3134 Length=1003 Score = 104 bits (114), Expect = 7e-18 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 28178 TGCTGATGTTTATGCTCGTCTGTATCTGCATCTTTCGCATCATCAATGCCGAACAAACCA 28237 |||||||| || ||||| | |||||||| ||||| ||||||||||||||||| | ||| Sbjct 272 TGCTGATGCTTGTGCTCATTAGTATCTGCGTCTTTTGCATCATCAATGCCGAATAGCCCA 213 Query 28238 TTGAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCCGTAACTTG 28284 || ||||||||||| | || ||||||||||| || || || || || Sbjct 212 TTAAGGCAATACTTTCTGGCGTAAGAGCTTGTTGCCCCTGTCACCTG 166 >seq2972 Length=2207 Score = 84.2 bits (92), Expect = 6e-12 Identities = 134/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 16155 AAGTGGGCGCTGTATTCAATCGCCCAGTACTGTGACGAAATGGTTTCCGACGGG---GCC 16211 |||||| ||||||| ||||| ||||| || ||| | ||||| | || || | | Sbjct 1982 AAGTGGACGCTGTACCAGATCGCGCAGTATTGCGACCAGTTGGTTCCTGATGGACGTGGC 2041 Query 16212 GGT---GGCACCGAACCGCGTTTCACCTGCAACGTTTTCATTCAGAGCCAGGAGGACGCC 16268 ||| ||||| ||||| ||||| ||| | || | || ||| ||||| || ||| Sbjct 2042 GGTAATGGCACTGAACCACGTTTTTTATGCGATGTGTATATCCAGTCGCAGGAAGAAGCC 2101 Query 16269 TGGCAGGTACTTAACGATCTCGCCGCGGTATTTCGTGGAATAACGTTCTGGGGCAACGAT 16328 ||| || ||||||||||| ||||| | ||||| || |||||||||||||| | Sbjct 2102 TGGACCGTGCTTAACGATCTGGCCGCCATTTTTCGCGGTGCTACGTTCTGGGGCAATAAC 2161 Query 16329 CAGATTTATGT 16339 ||||| |||| Sbjct 2162 CAGATGAATGT 2172 >seq2494 Length=1509 Score = 82.4 bits (90), Expect = 2e-11 Identities = 243/370 (66%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 37929 ATGACTATCAAATCAAATACGCCAGCACACGACAAGGACTGCTGGCAAACGCCGCTTTGG 37988 ||||| | |||||| | || | || | |||||||| |||| ||| |||| | Sbjct 1313 ATGACACTAAAATCACACACCAGACCAGAGCACAAGGACACATGGCGAACACCGCCCGAG 1254 Query 37989 CTTTTTGATGCACTGGATATTGAGTTTGGATTCTGGCTGGATTCGGCAGCGAGCGACAAA 38048 | || | | |||||| ||||| || |||| || ||| | || || | || | Sbjct 1253 GTCTTCCAGACGCTGGATGCGGAGTTCGGCTTCTACCTCGATGCCGCCGCTGACCACGAC 1194 Query 38049 AATGCTCTGTGCGCTCACTGGTTAACTGAGGCC----GACGACGCGCTAAATTCTGAGTG 38104 ||| | |||||| || || || |||| || || || || || | ||| || Sbjct 1193 AATACCCTGTGCCGTC--TG--TATCTGACGCAAGAGGATGATGCCCTTGCCTGTGACTG 1138 Query 38105 GATAAGCCACGGTGCAATCTGGAATAACCCACCGTACAGCAATATCAGGCCGTGGGTGGA 38164 || ||| |||| || |||| || || ||||||||||||||| | |||||||| || Sbjct 1137 GAGCAGCAACGGAGCCATCTTCTGCAATCCCCCGTACAGCAATATCCGCCCGTGGGTTGA 1078 Query 38165 AAAAGCCGCTGAGCAGTGCATACAACAGCGACAGACGGTAGTGATGCTTGTGCCAGAGGA 38224 |||| |||||||| || | || | | ||||| || ||||| |||| | || Sbjct 1077 TAAAGATGCTGAGCAAAGCCGCAAGCAACATAAAACGGTCGTTATGCTGCTGCCTGCTGA 1018 Query 38225 TATGTCTGTCGGATGGTTCAGCA-AGGCTCTGGAGAGTGTTGACGAAGTTCGCATCATCA 38283 || || ||||||||| ||| |||| | | | | ||||| || || ||| |||||| Sbjct 1017 TACCTCGACGGGATGGTTC-GCACAGGCACAGAAAACGGTTGATGAGGTGCGCTTCATCA 959 Query 38284 CTGATGGACG 38293 | || || || Sbjct 958 CCGAGGGCCG 949 >seq3569 Length=9788 Score = 80.6 bits (88), Expect = 8e-11 Identities = 46/47 (98%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 22032 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAT 22078 |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 8161 ATTCGTAATGCGAAGGTCGTAGGTTCGATTCCTATTATCGGCACCAT 8207 >seq3098 Length=1355 Score = 80.6 bits (88), Expect = 8e-11 Identities = 133/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 16155 AAGTGGGCGCTGTATTCAATCGCCCAGTACTGTGACGAAATGGTTTCCGACGGG---GCC 16211 |||||| ||||||| ||||| ||||| || ||| | | || | || || | | Sbjct 226 AAGTGGACGCTGTACCAGATCGCGCAGTATTGCGACCAGTTAGTACCTGATGGCCGTGGC 167 Query 16212 GGTG---GCACCGAACCGCGTTTCACCTGCAACGTTTTCATTCAGAGCCAGGAGGACGCC 16268 |||| ||||||| || ||||| ||| | || | || ||| ||||| || ||| Sbjct 166 GGTGACGGCACCGAGCCACGTTTTTTGTGCGATGTGTATATCCAGTCGCAGGAAGAAGCC 107 Query 16269 TGGCAGGTACTTAACGATCTCGCCGCGGTATTTCGTGGAATAACGTTCTGGGGCAACGAT 16328 ||| || ||||||||||| ||||| | ||||| || ||||||||||||||| | Sbjct 106 TGGACCGTGCTTAACGATCTGGCCGCCATTTTTCGCGGCGCTACGTTCTGGGGCAACAAC 47 Query 16329 CAGATTTATGT 16339 ||||| |||| Sbjct 46 CAGATGAATGT 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141055753139712