Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq2562 165 2e-36 seq3413 163 9e-36 seq3690 102 2e-17 seq3702 98.7 3e-16 seq3193 80.6 8e-11 >seq2562 Length=1341 Score = 165 bits (182), Expect = 2e-36 Identities = 182/240 (76%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 38955 GGCATGATTCTGGTCGATTACCTGACACTAATGACCGCTGAAAAGGCCGATCGCAACGAC 39014 ||||||||| || ||||||||||| || ||||| | || || |||||| ||| | Sbjct 459 GGCATGATTGGCGTGGATTACCTGACGCTGATGACGACCGATAAAGCCGATACCAATGCG 400 Query 39015 CTTGCTTACGGCATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTT 39074 || || | |||| |||||||| | ||||||||||||||||||||||| ||| ||| Sbjct 399 CTGGCGTTTGGCAATATCACCAAGGCGCTGAAGAACCTTGCCAAAGAGCTGGATACCGTC 340 Query 39075 GTTGTGCTTCTGACGCAGCTTAACCGCGCATTGGAA-AGCAGAACCAATAAACGCCCATT 39133 || ||||| ||||| ||||| |||||| ||||| ||| | |||| |||||||| | Sbjct 339 GTGGTGCTACTGACCCAGCTAAACCGCAATCTGGAAGAGC-GCGCCAACAAACGCCCCAT 281 Query 39134 ACCAAGTGACTCACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 39193 || |||||| || || | || |||||||| |||||||| ||||||||| |||| || Sbjct 280 GCCCAGTGACAGCCGGGAAAGTGGTCAGATTGAGCAGGATTGTGATTATTGGTTGGGTAT 221 >seq3413 Length=1126 Score = 163 bits (180), Expect = 9e-36 Identities = 357/535 (67%), Gaps = 50/535 (9%) Strand=Plus/Plus Query 32082 TTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGAC 32141 |||||| || ||||| ||||| || |||| || || |||||||| || || |||| | Sbjct 626 TTTCGATGATCCGCTCTGCTTCGTCGCTGTCGTAAATGCCAGCAAACCCAAATGCCATGC 685 Query 32142 GGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGCC 32201 | ||||||||||||| | || || || | ||| || |||| || || ||||||||| Sbjct 686 GTGCACACTGAATCAGTGACTTGTGGCGCAGCATACGGGTGGGGTGTGATTGCCACGGCT 745 Query 32202 CCGTGATTTCTCTGCCTTCGCGAGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCATT 32261 || ||| | || | |||| |||| ||| Sbjct 746 GGGT-ATTGCGCTCACAC-----------------TCGC------------CCATGTATT 775 Query 32262 CGGTAACG-CAGATCGGATGATTACGGTCCTTGCGGTAAATCCGGCATGTACAGGATTCA 32320 |||| || ||| | || || || || || || |||||||||| ||| || | | | Sbjct 776 CGGTGACTACAG-TGGGGTGTTTGCGATCTTTACGGTAAATCCTGCAAGTCGATGCGCCC 834 Query 32321 TTGTCCTGCTCAAAG------TCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGG 32374 | ||||| || || ||||||||||| || ||| | | ||| || ||||| || Sbjct 835 TCGTCCTTATCGTAGCTGAATTCCATGCCATCGAATTGCGGATGTTCGTTAATGATCCGC 894 Query 32375 GACCAGCCATCAACGCCCACCACCGGAACGATGCCATTCTGCTTATCAGGAAAGGCGTAA 32434 | ||| ||||| || || || |||||||| || || || | ||||||||||||||| Sbjct 895 GCCCATCCATCGACACCGACAACCGGAACAATCCCGCCCT---TGTCAGGAAAGGCGTAA 951 Query 32435 ATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCAACGATCAGTAATGCGATGAAC 32494 |||||||| |||||||| || || |||||||||||||||||||| |||| ||| | || Sbjct 952 ATTTCTTTTGTCCACGGGTTGAGTCCGTACTGGTTGGCAACGATAAGTAGGGCGGTAAAT 1011 Query 32495 TGCGCATCGCTGGC---ATCACCTTTAAATGCCGTCTGGCGAAGAGTGGTGATCAGTTCC 32551 ||| | || || | | | || || || ||||| | || ||| | || | ||| Sbjct 1012 TGCTCGTCCGTGACGTTACCCCCCTTGAACGCCGTATTCTTCAGCGTGCTCATTAATTC- 1070 Query 32552 TGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAGCGTTG 32606 ||| | | | ||||||| | ||||||||||| || ||||||| |||| Sbjct 1071 ----GGT-GCCTGGTGCCATGCCAAGGCGTTCAGCCAGTTTTCCAGCCATTGTTG 1120 >seq3690 Length=4460 Score = 102 bits (112), Expect = 2e-17 Identities = 395/604 (65%), Gaps = 24/604 (4%) Strand=Plus/Plus Query 21756 GCATTTAACTATATTGTGAGGCTTGCATAATGGCATTCAGAATG---AGTGAACAACCAC 21812 || ||||| ||||| |||||||||||||||||| || ||| |||||| | | Sbjct 2830 GCTTTTAATTATATAGTGAGGCTTGCATAATGGATTTTGAAATATCCAGTGAAGCAAAA- 2888 Query 21813 GGACCATAAAAATTTATAATCTGCTGGCCGGAACTAATGAATTTATTGGTGAAGGTGACG 21872 ||||| || ||||||||||| | || | || || ||||||||||||| || || | Sbjct 2889 --ACCATTAAGATTTATAATCTCCACGCTGATACAAAGGAATTTATTGGTGCTGGAGATG 2946 Query 21873 CATATATTCCGCCTCATACCGGTCTGCCTGCAAACAGTACCGATATTGCACCGCCAGATA 21932 | |||||||| ||||| || || | || ||| | |||| | ||||| ||||| | Sbjct 2947 CTTATATTCCACCTCACACAGGGTTACCGGCACTCTGTACAACAACCGCACCACCAGAAA 3006 Query 21933 TTCCGGCTGGCTTTGTGGCTGTTTTCAACAGTG-ATGAGGCATCGTGGCATCTCGTTGAA 21991 | | || | | ||| |||||||| ||| ||| | || ||| | || ||| Sbjct 3007 TCCTGGTCGACCATGTTGCTGTTTTTAAC-GTGCAAGAACAGATTTGGGTACAGGTAGAA 3065 Query 21992 GACCATCGGGGTAAAACCGTCTATGACGTGGCTTCCGGCGACGCGTTATTTATTTCTGAA 22051 || ||||| || |||| ||||||||| | | || | || | | || | | Sbjct 3066 GATCATCGAGGAGAAACTGTCTATGACAAAACGACAGGGAATGCTATTCTAATCACAAAG 3125 Query 22052 CTCGGTCCGTTACC--GGAA--AATTTTACCTGGTTATCGCCGGGAGGGGAATATCAGAA 22107 | || ||||| | | || | | | | | | | || || ||||| | || Sbjct 3126 ATTGGATCGTTATCTAGCAACGAGGTGTGCATTG----CACCTAATGGAAAATATGAAAA 3181 Query 22108 GTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAAC-TGTTCCGGATCCGGG 22166 |||||||| | | |||||||| || | || || |||||| || || ||| | Sbjct 3182 ATGGAACGGTAAGGTTTGGGTGAAAGACAAGGTTGCGGAAAAAAATGCTCAT-ATCATAG 3240 Query 22167 AGGCGGAAGAAACaaaaaaa-aGCCTGATGCAGGTAGCCAGTGAGCATATT-GCGCCGCT 22224 | || || | || ||||| | || || | |||| | || || | || |||| Sbjct 3241 AAGCAAAA-ACTCAGAAAAATAATATGCTGATGATAGC-ACACAGTATGGTAGCTACGCT 3298 Query 22225 TCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAACCTCGTTGCTGGAAGCCTG 22284 ||||||||| ||| || ||||| ||||| || ||||||||||| || | ||| Sbjct 3299 AGAGGATGCTGTAGAACTTGAAATAGCAACTGACGAAGAAACCTCTAAACTCCCCGTCTG 3358 Query 22285 GAAGAAGTATCGGGTGTTGCTGAACCGTGTTGATA-CATCAACTGCACCTGATATTGAGT 22343 ||| || || || ||| || | |||||||| |||| || | ||||| || ||||| || | Sbjct 3359 GAAAAAATACCGCGTGCTGATTAACCGTGTCGATATCAGC-ACTGCGCCGGATATCGACT 3417 Query 22344 GGCC 22347 |||| Sbjct 3418 GGCC 3421 >seq3702 Length=11964 Score = 98.7 bits (108), Expect = 3e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38967 GTCGATTACCTGACACTAATGACCGCTGAAAAGGCCGATCGCAACGACCTTGCTTACGGC 39026 || ||||| || || || ||| || |||| ||| || ||| ||| | ||| ||| Sbjct 5906 GTTGATTATCTCACCCTGATGCGCGGTGAAGCGGCAGAGCGCCGCGATATCAGTTATGGC 5965 Query 39027 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTG 39086 |||||||| || || || || || || ||||| || |||||| | || |||| || Sbjct 5966 GCGATCACCACCGGGCTTAAAAATCTGGCGAAAGAACTGGATTGCATCGTGCTGCTGCTT 6025 Query 39087 ACGCAGCTTAACCGCGCATTGGAA-AGCAGAACCAATAAACGCCCATTACCAAGTGACTC 39145 || ||||| ||||| | |||||| ||| | || | |||||||| |||||| |||| Sbjct 6026 ACCCAGCTAAACCGTGGATTGGAGCAGC-GCGCCGACAAACGCCCTTTACCATCTGACAG 6084 Query 39146 ACGAGATACAGGGCAGATTGAACAGGATTGCGA 39178 ||||| ||||| || || ||||||||||| Sbjct 6085 TAAGGATACCGGGCAAATCGAGCAGGATTGCGA 6117 >seq3193 Length=7383 Score = 80.6 bits (88), Expect = 8e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 22190 CTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATT 22249 ||||||||| | ||||| ||| || || || |||||||| |||||||| || | Sbjct 623 CTGATGCAGATGGCCAGCATCGCTATCGCCCCACTACAGGATGCAGCAGATCTCGATCTG 682 Query 22250 GCAACGGAGGAAGAAACCTCGTTGCTGGAAGCCTGGAAGAAGTATCGGGTGTTGCTGAAC 22309 || ||||||| ||||| || ||| | || |||||||| || || |||||||||||| Sbjct 683 GCCACGGAGGCAGAAAGGGCGCAGCTTGTCGCGTGGAAGAAATACCGTGTGTTGCTGAAC 742 Query 22310 CG 22311 || Sbjct 743 CG 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150559305311232