Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq2351 154 2e-32 seq3764 91.5 2e-13 >seq2351 Length=10305 Score = 154 bits (170), Expect = 2e-32 Identities = 296/427 (69%), Gaps = 16/427 (4%) Strand=Plus/Minus Query 146553 CATGAGGTCGTTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACC 146612 ||| || | ||| | || || || ||||| ||||| || | ||||| | || || || Sbjct 2996 CATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCC 2937 Query 146613 TTTATTGTTCTTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAA 146672 ||||||||||| || |||||| |||| ||||| |||||||| | ||| ||| |||| Sbjct 2936 ACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAA 2877 Query 146673 AGTAGCTGCACCGCCACGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTG 146729 || || || ||||| || | ||||| || || || ||||| || | | || || || Sbjct 2876 CGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATG 2817 Query 146730 AGTTTTCCAGAATGGAATAACGCCTGTATGACGAA--CTTCACCAGCGCCAATCTTAGAA 146787 ||| |||| |||||| ||| ||||| ||| |||||||| ||| |||| | Sbjct 2816 ---TTTATAGAAAGGAATACAGCCAGTATG--GAATGCTTCACCACCGCGAATCGGGCTA 2762 Query 146788 CCTTCAGCACG-ATACATTCCAGCATTAACACCAATACCGGCACGTTTGCTGATA--TAT 146844 || ||||| |||| || || |||| || ||||||||||| | ||| | ||| Sbjct 2761 CCCAGCGCACGAATAC-GACCGGCGTTAATGCCGATACCGGCACGCT--GTGAAACGTAT 2705 Query 146845 TTGATGATTGCTTTGTTTACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACA 146904 || | ||| || || |||||||| || || || ||||| | ||||| | Sbjct 2704 TTCACGATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAAC 2645 Query 146905 ACGCAAGAACTGAACTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGA 146964 ||||| || |||||||| || || || ||||| || |||| ||| || || || |||| Sbjct 2644 ACGCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAAT 2585 Query 146965 GAAATCT 146971 ||||||| Sbjct 2584 GAAATCT 2578 >seq3764 Length=2321 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 74899 ATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTA 74958 || ||||||||| | ||| ||||||||| |||||| ||||||||||||| |||||||| Sbjct 2120 ATATGGTGGCCCCTGTTGGGTTTGAACCAACGACCAAGCGATTATGAGTCGCCTGCTCTA 2179 Query 74959 ACCATCTGAGCTAAAGGGCC 74978 |||| ||||||||| ||||| Sbjct 2180 ACCA-CTGAGCTAAGGGGCC 2198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540034012984320