Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq3839 168 1e-36 >seq3839 Length=10135 Score = 168 bits (186), Expect = 1e-36 Identities = 217/297 (73%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGC-AGA 122421 |||||||| |||||||| || ||| | || | ||| | ||| ||| ||| ||| Sbjct 1882 ATGAAACAGTATCTGGAATTGATGCAGAAGGTGCTTGATGA-GGGAACGCCGAAGGGAGA 1824 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 | | || ||||| || ||| | ||| | |||||| || ||||| || | |||||| | Sbjct 1823 CAGAACCGGCACCGGAACCTTATCGATTTTCGGCCACCAGATGCGTTTCAATCTGCAAGA 1764 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 ||||| |||||||| || ||||| || || ||||| ||||| || ||||| | Sbjct 1763 CGGTTTTCCGCTGGTGACCACCAAGCGCTGCCATCTGCGCTCAATCATTCACGAGCTGTT 1704 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 ||||||||||| || || |||||| | |||||| | ||||| || || || || || Sbjct 1703 GTGGTTCCTCAACGGTGACACCAACGTTGGCTATCTGCACGACAATAAAGTTAGCATTTG 1644 Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 |||||||||||| ||||| |||| |||| || ||||| ||||||||||| ||||| Sbjct 1643 GGATGAATGGGCCGATGAGAATGGCGATCTTGGGCCGGTATACGGTAAGCAGTGGCG 1587 Score = 156 bits (172), Expect = 7e-33 Identities = 225/315 (71%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 123074 TCCTGTCAGCTGTATCAGCGCA-GTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGC 123132 ||||||||||| || |||||| ||| ||| ||||||| || | ||||| || ||||| Sbjct 1405 TCCTGTCAGCTTTACCAGCGCTCGTG-TGATGTGTTCCTCGGTCTGCCGTTCAATATTGC 1347 Query 123133 CTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACTT 123192 | ||| || || ||| | || ||| | || |||||| | | | | ||| || ||||| Sbjct 1346 CAGTTATGCACTGCTGGTGCATATGATGGCGCAGCAGTGCGACCTTGAAGTCGGCGACTT 1287 Query 123193 CGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTTGCA 123252 || ||||| ||||| || ||||||||| |||||| |||||||| | ||||||| Sbjct 1286 TGTCTGGACCGGTGGTGACACCCATCTGTACAACAACCATATGGAGCAGACGCATTTGCA 1227 Query 123253 GTTAACTCGCGAACCTCATCCGTTACCACAACTGCGGATTAAACGTCGTCCGGATTCTAT 123312 | | || || || | || | || || || |||||||| ||||| | || | Sbjct 1226 ACTGAGCCGTGAGCCAAAAGCGCTGCCGAAATTGATCATTAAACGCCGTCCTGCCTCGCT 1167 Query 123313 CTTCGACTATAAGTTTGAAGATTTCGAAGTGGTCGGATACGAATCGCATGACGCTATTAA 123372 || |||||| |||| || ||||||||| | | || ||||| ||||| || || || Sbjct 1166 GTTTGACTATCAGTTCGATGATTTCGAAATAGAAGGCTACGATCCGCATCCTGCCATCAA 1107 Query 123373 GGCACCGGTGGCGAT 123387 ||||||||||||||| Sbjct 1106 GGCACCGGTGGCGAT 1092 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 122840 CGCCGTATCATCGTCAGTGCCTGGAACGTGGCTGACCTGGATGAAATGGCGTTAGCACCA 122899 ||||||||||| || |||||||||||||| ||| | ||| |||||||| | ||||| Sbjct 1507 CGCCGTATCATTGTTTCTGCCTGGAACGTGGGTGAGTTAGATCAAATGGCGCTGGCACCG 1448 Query 122900 TGCCATGCCTTCTTCCAGTTCTAC 122923 |||||||| || ||||| |||||| Sbjct 1447 TGCCATGCGTTTTTCCAATTCTAC 1424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777593429452800