Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq2351 244 1e-59 seq3532 167 3e-36 seq2333 161 1e-34 seq3176 131 2e-25 >seq2351 Length=10305 Score = 244 bits (270), Expect = 1e-59 Identities = 309/421 (73%), Gaps = 8/421 (2%) Strand=Plus/Plus Query 40460 CCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTA 40519 || || || || ||| | || || ||||| || || || |||||| | || || | Sbjct 2589 CCAACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTG 2648 Query 40520 ATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTC---TGCGATCGTGAAG 40576 ||||| | || || || | ||| ||||||| ||||| ||| |||||||| Sbjct 2649 ATTGAGTGCGGCGACAGCCTGGATTCCATTAACGCC---ACCTCCAGTGCTATCGTGAAA 2705 Query 40577 TATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCT 40636 || ||||||| ||||| ||||| || ||||||| || | |||||| || ||||| Sbjct 2706 TACGTTTCACAGCGTGCCGGTATCGGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGC 2765 Query 40637 AAAATCCGTGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCTGGAAACATATTCA 40695 || || ||||||||||| | |||||||| ||| |||||||||| |||||| | || Sbjct 2766 CCGATTCGCGGTGGTGAAGCATTCCATACTGGCTGT-ATTCCTTTCTATAAACATTTCCA 2824 Query 40696 AACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTA 40755 ||||| || |||||||| |||||||| || || || || || || ||||| ||| ||| Sbjct 2825 GACCGCAGTGAAATCCTGCTCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTA 2884 Query 40756 TCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGA 40815 || | |||||||||||||| |||| ||| |||||| ||||||||||| ||||| || Sbjct 2885 CCCGCTGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGA 2944 Query 40816 AGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATGTATAAACG 40875 || |||||||| ||||| || ||||| || || ||| | ||| || |||||||| | || Sbjct 2945 AGGCAACCGCGTGCGTCACCTCGATTACGGCGTGCAGTTGAACAAGCTGATGTATCAGCG 3004 Query 40876 C 40876 | Sbjct 3005 C 3005 Score = 118 bits (130), Expect = 1e-21 Identities = 255/379 (67%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 42206 GTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTT 42265 || || ||||| || ||| ||| | || | ||||| | |||| | |||||||| Sbjct 4415 GTAGCGCGTTACGATCAGCAAAAATATGAAATATTCGAGAAGCTGATAGAGAAACAGCTC 4474 Query 42266 TCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAA 42325 || || ||||||||||| ||||| || ||| ||||| || || || | ||| Sbjct 4475 TCCTTTTTCTGGCGTCCAGAAGAGGTGGATGTGTCTCGCGATCGCATCGACTATCAGGCG 4534 Query 42326 CTTCCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGAT 42385 || || ||||||||||| ||| ||| || || | || ||||| ||| | || Sbjct 4535 CTACCAGAACATGAAAAGCACATCTTCATCAGCAATCTGAAATACCAAACACTGCTGGAC 4594 Query 42386 ACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCC----AATTGCATCCGATGTGAG 42441 ||||||| ||||| | || ||| ||||||| || || | | ||||| | ||| Sbjct 4595 TCCATTCAAGGACGCAGCCCGAACGTCGCATTGTTACCGCTGATCTCCATCCCA---GAG 4651 Query 42442 CATGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACAC 42501 ||||||||||||| ||||| ||||| ||| ||||||||||| |||| || || Sbjct 4652 -TTGGAAACCTGGATAGAAACCTGGGCATTTTCAGAAACCATCCATTCCCGTTCCTATAC 4710 Query 42502 GCATATTCAACGTAACTTGCACATTGATCCTTCTGTACAGTTCGACCAAATCCTTCGCAA 42561 ||||| || || | || ||||| | | |||||| | ||| || ||| Sbjct 4711 CCATATCATCCGCAATATTGTCAACGATCCGGCACTGGTGTTCGATGATATCGTTACCAA 4770 Query 42562 TGAAGCGATTATGAAACGT 42580 ||||| |||| |||||||| Sbjct 4771 TGAAGAGATTCTGAAACGT 4789 Score = 91.5 bits (100), Expect = 2e-13 Identities = 338/511 (66%), Gaps = 24/511 (5%) Strand=Plus/Plus Query 42767 GTGAACGCTCTGGAAGCGATCCGTTTCTATGTGTCGTTTAGTTT-CACCTTTAACTTTGC 42825 || ||||| |||||||| |||||||| ||||| |||| | | | | || |||||| Sbjct 4940 GTCAACGCGCTGGAAGCCATCCGTTTTTATGTCA-GTTTCGCCTGCTCATTCGCCTTTGC 4998 Query 42826 TGAACAAGGCAAGATGGAAGGCAACGCGAAAATTATGCGCCTGATTGCGCGTGATGAAGC 42885 |||| | |||||| |||||||| |||||||| ||||| || || |||||||| Sbjct 4999 CGAACGCGAACTGATGGAGGGCAACGCCAAAATTATCAAACTGATCGCCCGCGATGAAGC 5058 Query 42886 ATTGCATCAGAAAGGTACTCAGAGTAAAATCCGTTTGTGGCAAATGGGTAAAGATGATCC 42945 |||| | || ||||| ||| || | | || || || | || ||||| Sbjct 5059 GCTGCACCTGACCGGTACCCAGCATATGCTGAATCTGATGCGTTCCGGCCAGGACGATCC 5118 Query 42946 AGAAATGGTTGAAATCTCCCGTAGGCTGAAAAAAGAA--GCAACGGC-TATCT-TCCTGG 43001 ||||||| ||||| || | || || || || | || ||| | | | | | |||| Sbjct 5119 GGAAATGGCACAAATCGCC-GAAGCGTGCCAACAGGAATGCTACGACCTGTTTGTGCTGG 5177 Query 43002 AAGTATATGAACAGGAAAAAGAATGGGCTGAACATTTATTCTCTGTTGGTGATGTAGAAG 43061 | | | ||||| ||||| ||||| ||| | | ||| | ||| | || | Sbjct 5178 CTGCACAG---CAGGAGAAAGAGTGGGCGGAATACCTGTTCCGCGACGGT----TCGATG 5230 Query 43062 GTGTATCGCTGAA--AAG-CACTATC-GCTTATA--TTGAACACCTTACAGATCAGCGTA 43115 | | | ||||| ||| || | || || || ||||| || | || || || | Sbjct 5231 AT-TGGC-CTGAACAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGCA 5288 Query 43116 TGCGAGCGGTAGGGCTTGATTCGCCATTCACCCCGATCCCTAACCCGTATCCGTGGATGA 43175 ||| |||||||||||| | ||| ||| || | |||||||| |||||||| | Sbjct 5289 TGCAAGCGGTAGGGCTGCCCTTGCCGTTCCAAACGCGCACTAACCCGATCCCGTGGATTA 5348 Query 43176 ATAAATGGCTCAAAAGTGATAACGTACAGGTTGCCCCGCAAGAGGTTGAAGTAAGTTCTT 43235 || ||||| ||| ||||| |||||||| |||||||| || ||||| ||||||| Sbjct 5349 ATGCCTGGCTGGTCTCTGACAACGTGCAGGTTGCTCCGCAAGAAGTGGAAGTGAGTTCTT 5408 Query 43236 ACCTCGTCGG-AAACTTGAATACTGAAATCA 43265 | || ||||| || ||| || |||| |||| Sbjct 5409 ATCTGGTCGGCCAAATTG-ATTCTGAGATCA 5438 >seq3532 Length=11862 Score = 167 bits (184), Expect = 3e-36 Identities = 149/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 50851 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 50910 |||||||| || || || | ||||| ||||| ||||||| ||||| || |||||| Sbjct 11335 GTGGAAGGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCG 11276 Query 50911 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 50970 || |||| || ||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 11275 GTAAAACACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGT 11216 Query 50971 TTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACCTTTACAGAGAGT 51030 || |||||| ||||||| ||||||||||| ||||| || | | || || || || || Sbjct 11215 TTCAACTCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGC 11156 Query 51031 CTATAAT 51037 || |||| Sbjct 11155 CTGTAAT 11149 >seq2333 Length=8475 Score = 161 bits (178), Expect = 1e-34 Identities = 784/1229 (64%), Gaps = 56/1229 (5%) Strand=Plus/Minus Query 152044 TTGCCCGTGCATATATCGAATATCGTCATGATCGTGATATCGCCCGTGAACAAAACGGAA 152103 |||| ||| | || || || || ||||| ||||||||| ||||||| |||||| ||| Sbjct 5739 TTGCACGTACCTACATTGAGTACCGTCACGATCGTGATGTCGCCCGCGAACAACGCGGCC 5680 Query 152104 AATT-ATTCCGTGATATCAAGGGTTTGATGACTCTTAGTAACAAAGAATTAACCAACGAA 152162 || | || | | || || | | ||| | || |||| | | |||||| Sbjct 5679 GTTTGAATCAGGAAATTCGTGGTCTGGTTGAA-CAGAGCAACATGGCCCTGCTCAACGAG 5621 Query 152163 AACGCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCGGGTATCGTT 152222 ||||| |||||||| | ||| |||| || | ||||| || ||||| ||||||||| Sbjct 5620 AACGCCAACAAAGACAGTAAAGTAATCCCTACCCAGCGCGACCTGCTGGCCGGTATCGTT 5561 Query 152223 TCTAAACA-TATGGCGCGTAACCATATTCTACCGAAACATATTGTAGAGGCGCATGATTC 152281 | || || || | | | ||| |||| || ||| | | || || ||||| Sbjct 5560 GCCAAGCACTACGCCAAGCAAC-ATATCCTGCCGCGCGACGTGGTGCTTGCTCATGAACG 5502 Query 152282 CGGTGATATTCATTATCACGATCTGGATTACAGCCCGTTCACCCC-ATACACTAACTGCT 152340 |||||| ||||| || ||||||||||| ||| ||||||| ||| || | ||||| Sbjct 5501 CGGTGAAATTCACTACCACGATCTGGACTACTCCCCGTTCTTCCCGATGTTC-AACTGTA 5443 Query 152341 GTCTTGTTGACCTAAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCTGATATCG 152400 || | ||||| |||||||||| || |||||| ||||||||||| || || | Sbjct 5442 TGCTGATCGACCTTGAAGGCATGTTGACCAAGGGGTTCAAGATGGGTAACGCGGAGATTG 5383 Query 152401 AACCGCCTAAATCAATCGGTGTTGCTACTGCTCTTATGGCTCAGATCACCGCACAGATTG 152460 | || || ||||| ||| || || || | | ||| || |||| ||| ||| | | Sbjct 5382 AGCCACCAAAATCCATCTCAACCGCGACAGCAGTGACGGCCCAAATCATCGCGCAGGTGG 5323 Query 152461 CTTCTCACCAGTACGGCGGGACAACCTTTGCAAATGTCGATCAGGTGCTGGCCCCTTACG 152520 | ||| |||||||| || ||| || | ||||| | | ||||| || | || Sbjct 5322 CAAGCCACATCTACGGCGGCACCACCATTAACCGTATCGATGAAATTCTGGCACCGTTCG 5263 Query 152521 TTGAAATGACGTAC--AACAAACACTTTAAAGATGCTGTT---TGGTACGGGGTTCCTAA 152575 | | | | | || || ||| || ||||| | ||| || |||| | Sbjct 5262 T--CACCGCCAGCCTTAAAAAGCACCGGGAAACTGCTGATGAGTGGCAC---ATTCCCGA 5208 Query 152576 ATCAAAACAGTATGCGATGGAAAAAACAGAAAAGGATGTATTCGATGCGTTCCAGTCATA 152635 | | ||||| || || ||||| || | ||| || |||||||| Sbjct 5207 TGCGGACGCCTATGCACTGTCTCGTACCGAAAAAGAGTGCTACGACGCCTTCCAGTCGCT 5148 Query 152636 CGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGACGCCTTTTGTCACAATCAC 152695 |||||||||||||| || | || || || ||||| ||||| || |||||||| | Sbjct 5147 GGAATATGAAGTAAATACGCTGCACACCGCCAATGGTCAGACACCGTTTGTCACCTTTGG 5088 Query 152696 TTTCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCAGAAAGCGATTCTGAAAAA 152752 ||||||| | || || ||||| ||| ||| |||| ||| || | || ||| || Sbjct 5087 TTTCGGTCTCGGCACCCGTTGG---GAATCGCGCCTGATTCAGCAATCCATCCTGCGCAA 5031 Query 152753 CCGTATTCGTGGACTGGGTAAAAAAGGCATTACCCCTGTATTCCCAAAACTGGTTATGTT 152812 ||| ||| || ||||| ||||| | | ||| | || ||||| |||||||| | Sbjct 5030 CCGCATTGCCGGTCTGGGCAAAAACCGTAAAACCGCGGTGTTCCCCAAACTGGTGTTCGC 4971 Query 152813 TATGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAACTATGATATTAAGAAATTGGC 152872 ||| | || | || | || | | || |||||||| || ||| || |||| Sbjct 4970 TATCCGCGACGGTGTCAATCACAAGGCTGCCGATCCGAACTATGACATCAAGCAACTGGC 4911 Query 152873 CCTGGAATGTGCTTCAAAGCGTATGTATCCGGATATT----ATTA-GCGCGGCTAATAAC 152927 ||||| || || ||||| ||||| ||||||||| |||| | | | | | | Sbjct 4910 ACTGGATTGCGCCAGCAAGCGGATGTACCCGGATATTCTCAATTACGATCAGGTGGTTAA 4851 Query 152928 CGTCGTATTACTGGCTCTAGCATTCCTGTATCTCCTATGGGTTGTCGTAGTTTCCTTAGC 152987 | |||| |||| | || | | |||||||| || || ||||||||| || Sbjct 4850 GG-----TTACCGGCT----CGTT--TAAGACGCCTATGGGCTGCCGCAGTTTCCTTGGC 4802 Query 152988 GTGTGGAATGATGAGCACGGTAATGAAATTCTTGATGGACGTAATAACCTGGGCGTTGTG 153047 |||| |||| || | || || | || | ||||| || || ||||| || || | Sbjct 4801 GTGT---ATGAGGAAGAGGGCAAGCAGATCCACGATGGTCGCAACAACCTCGGGGTAATC 4745 Query 153048 ACAATCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCACAGGAAGATGAAGACGCGCAT 153107 | ||||||| || || || ||| | ||||| ||| || | | ||||| ||| Sbjct 4744 AGCCTCAACCTGCCGCGCATCGCGCTGGAAGCAGAA-CATA-----ACGAAGA-GCG--- 4695 Query 153108 GATGCATTTTGGCGTATCCTTGATGAACGTCTGGAACTGTGCTTTGAAGCCCTGATGACT 153167 || ||| | | ||| | |||||| ||||| |||| ||||||| Sbjct 4694 -----TTTCTGGAACCTGTTGGATAATCGTCTGCAACTGGCGAAAAAAGCGTTGATGACG 4640 Query 153168 CGTATTGATAGTCTCAGAGGTGTTAAAGCCAGTGTAGCCCCGATCCTTTATACAGAAGGT 153227 || || || || | | || |||||| |||| || || ||||| |||| ||||| Sbjct 4639 CGCATCGAGCGTTTGGAAAACGTCAAAGCCCGTGTCGCTCCAATCCTGTATATGGAAGGC 4580 Query 153228 GCGTTTGGTGTACGGTTGAAACCCGATGA 153256 || | ||||||||| ||||| | || || Sbjct 4579 GCCTGTGGTGTACGCCTGAAAGCGGACGA 4551 >seq3176 Length=18404 Score = 131 bits (144), Expect = 2e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 50854 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 50913 |||||||| || || | ||||| |||||| || ||| |||| || ||||||| | Sbjct 6497 GAAGGTGGTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATGCCATG 6438 Query 50914 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 50973 ||||| || |||||||| || ||||| || |||||||||||||||||||| ||||| || Sbjct 6437 GAACACCCGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGCGCTTC 6378 Query 50974 AACTCACTGACCCCTGAACAGCAACGCGACGTTAT 51008 ||||| |||||| |||||||| | |||||||| Sbjct 6377 AACTCGCTGACCAAAGAACAGCAGCAAGACGTTAT 6343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557965923517440