Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_020198.1 Length=36947 Score E Sequences producing significant alignments: (Bits) Value seq3688 340 4e-89 seq3855 134 3e-27 seq1892 122 2e-23 >seq3688 Length=22785 Score = 340 bits (376), Expect = 4e-89 Identities = 397/535 (74%), Gaps = 1/535 (0%) Strand=Plus/Plus Query 13982 CCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCACCCTGGTG 14041 ||| | ||| |||| || ||||| || ||||||||||| | |||||||| || ||||| Sbjct 6451 CCGAAAGGCGAGCAGGACGCCATCGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGTC 6510 Query 14042 AGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCATC 14101 |||||| | || ||| | ||||| | | |||| |||||| || ||||| | | Sbjct 6511 AGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCCCTGGTGGTG 6570 Query 14102 ATGGATGCCTTCGAACAGGCCGCCACGATGCTGGAAGCGATCAAGGCGGAGCTGGAGTTC 14161 |||||| || |||| |||||| | ||||||| ||||| |||||||| |||||||| ||| Sbjct 6571 ATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATTC 6630 Query 14162 AACCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAAGTC 14221 ||||| || ||| ||||||||| | | | ||||| ||| ||||||||||| | Sbjct 6631 AACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGCATGGGGCGCGTCTGGCAGATG 6690 Query 14222 GGCACCATCGTTACGGCGAACGATGCCAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGATG 14281 ||||||||| | ||| |||||| |||||| ||||| |||| ||| || | || Sbjct 6691 GGCACCATCCTGACGCGCAACGATATCAAGGTGCAGGTGGCCGGCAGCGGTAAAAAGCTG 6750 Query 14282 CGCGGTCTTCGACACGGCCCGCATCGTCCTGACCTGGTGATCGGCGACGACCTGGAGAAC 14341 ||||| || || ||||| ||| | || |||||||||||||| ||||| | |||||| Sbjct 6751 CGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGAAC 6810 Query 14342 GACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAGACC 14401 |||||| | || |||| |||||| |||||||||||||||||||||||||||| || ||| Sbjct 6811 GACGAGCAGGTACGCAACCCGGACCAGCGCGACAAGCTGGAAAACTGGCTGAGAAAAACC 6870 Query 14402 GTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTCATCATCATCGGCACCATCCTT 14461 || ||| | || || || | || | | || || || |||||||||||||| Sbjct 6871 GTGCTGCCGCTGGGTGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCCTG 6930 Query 14462 CACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCGCTGTGGAAGC-GGCGC 14515 || ||||||||||| | || ||| ||||| |||||||| ||| || ||||| Sbjct 6931 CATTACGACTCGGTGTTATCACGCACCCTGAATAACCCGCTATGGCGGCAGGCGC 6985 Score = 311 bits (344), Expect = 2e-80 Identities = 422/583 (72%), Gaps = 14/583 (2%) Strand=Plus/Plus Query 14705 CGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCTGTCCAGGGC 14764 || ||||| || || ||| | | || || | || | ||||| | ||| ||| || Sbjct 7165 CGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGCCCCGGTCAGCGGT 7224 Query 14765 GAAAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTGGCGCAATG 14820 ||| | || | || ||| |||||||| |||||||||||||| || | || Sbjct 7225 GAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTTAACGAGTG 7280 Query 14821 GATGTTCTACGGCGCGTGTGACCCGTCCCTGGGTAAGCAAGGTTCCAGCCGCGACCC--C 14878 | | |||||||| || || ||||| ||| || ||| || ||||||| ||||| | Sbjct 7281 GCTTTTCTACGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGACCCGTC 7340 Query 14879 AGCGCCATCCTGGTGGGTGGGTTCAACCGGGAGACAGGCGTCCTGGACGTGGTCGAGGCC 14938 ||||| | ||||| ||||| || || || | || ||||| ||||| ||||| || || Sbjct 7341 AGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTGGAAGCG 7398 Query 14939 GCCATCCGCAAACGCCTGCCGGACAAGATCATCGAGGACGTCATCGCCATGCAGCGGGCC 14998 || ||||| || ||||||||| || ||| | | || || |||| || Sbjct 7399 CAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAAAAGGAA 7458 Query 14999 TATCACTGCCTGGTGTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTCCTGCGCACCGAG 15058 || ||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||| Sbjct 7459 TACCACTGTCTGGTGTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGCACCGAG 7518 Query 15059 CTGGTGAAGCGCTCGGCCAAGGCTGGCT-GCCCAGTACCTGCCCGAGCGATCACGCCACA 15117 ||| | |||||| ||| || ||||| | ||| || || || || || || | || || Sbjct 7519 CTGATTAAGCGCGCGG-CACAGCTGGGTCACCCGGTGCCGGCGCGGGCTATTATCCCCCA 7577 Query 15118 TGCCGACAAGCTACTGCGCATCGAAAGCCTCCAGCCGCACATGGCCAACGGCCTCATCCG 15177 |||||||||||| |||| ||||| | ||| ||||| || |||| ||||| || ||||| Sbjct 7578 TGCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTTATCCG 7637 Query 15178 TCTGCATCCAAGCCAGACCGTCCTGGAACAACAGCTGCGGCACTTCCCGGCCGCAGACCA 15237 |||||| | ||||||||| ||| ||| |||||||| ||||| || ||| ||||| Sbjct 7638 TCTGCACGCCAGCCAGACCACACTGATACAGCAGCTGCGCCACTTTCCCCGCGCCGACCA 7697 Query 15238 CGACGATGGCCCCGACGCCCTACACATGCTCTGGATGCTAGCC 15280 ||||| ||||| ||||| || || |||||||||| ||| ||| Sbjct 7698 TGACGACGGCCCGGACGCGCTGCATATGCTCTGGACGCTGGCC 7740 Score = 120 bits (132), Expect = 7e-23 Identities = 399/608 (66%), Gaps = 21/608 (3%) Strand=Plus/Plus Query 15842 TGGATGCCGCTG-GCGTTCCACCACCGACCGCAGAGCTGGTTCCAG--CTCAACCCCGAA 15898 ||| |||| ||| || ||| || | || ||||| ||||||||||| | |||||| | Sbjct 8271 TGGCTGCC-CTGTGCCTTCTACAAGCGCCCGCAACGCTGGTTCCAGACCGCAACCC--AT 8327 Query 15899 GACCAGAACGAGCTGCGGCTGCGCGACAACAGCCCGGCCGGCGAAGCCTTGCAGCCCTTC 15958 |||| |||| | || ||| ||| ||||| | ||| | | | | ||||| Sbjct 8328 GACCGTAACGCTATCCGCCTGATTGACGGCAGCCTTGACGGTGCTGAGCTTAATCCCTTT 8387 Query 15959 GGCTGGATCATTCACCGGCCGCGTGCGCGCTCCGGCTATGTGGCCCGCAGCGGCCTGTTC 16018 |||||| | | || || | | || ||||| || ||| ||||| |||||| Sbjct 8388 GGCTGGCTGCTGCATCGCCATCAGGCCAAAAGCGGCTGGGTAGCCGAAAGCGGTCTGTTC 8447 Query 16019 CGCGTGCTGGCCTGGCCGTACCTGTTCCGTCACTACGCCACCTCCGACCTGGCGGAAATG 16078 || || |||| ||| | ||||||||| | || || |||||||||||| | Sbjct 8448 CGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCGTGACCTGGCGGAATTT 8507 Query 16079 CTGGAAATCTATGGCCTGCCGATCCGGCTGGGGAAATA-TCCGCCAGGTACTGCCGACGA 16137 ||||||||||| |||||||||| ||| |||| | || |||| | || | | || || Sbjct 8508 CTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGACGGGGCCAG-TGAAGA 8566 Query 16138 GGAAAAGGCAACCT--TGCTGCGGGCCGTTACCGGCCTGGGCCACGCTGCTGCCGGGATC 16195 |||||| ||| | ||||| |||| | || |||||| || || | ||| || Sbjct 8567 AGAAAAG--AACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCATAACGCCGGCGGCATT 8624 Query 16196 ATCCCCGAAACCATGGCCATCGACTTCCAGCAGGCGGCGCA-GGGCAGTAGCGATCCGTT 16254 |||| |||| || || ||| ||| || || || || |||||| ||| ||||| Sbjct 8625 ATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGGGCAG-GTCGACCCGTT 8683 Query 16255 CCTGGCGATGATGCGGCAAAGCGAAGACGCCATATCCAAGGCGGTCCTCGGCGGCACCCT 16314 || | ||||||| | ||||| | || ||||||| | || ||||||||||| Sbjct 8684 CCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCATTCTGGGCGGCACCCT 8743 Query 16315 GACCAGCACCACCAGCCAGTCAGGCGGTG--GTGCTTTTGCCCTGGGCCAGGTGCATAAC 16372 ||||| |||| | | | | | | | | ||||| ||| | ||||||||| Sbjct 8744 GACCA-----CCCAGGCGGACGGCAAGAGCAGCACCAACGCCCTAGGCAACGTGCATAAC 8798 Query 16373 GAGGTTCGGCACGACCTGCTGGCATCCGATGCCCGCCAGTTGGCGGCCACGTTGTCCCGC 16432 || || || ||||| ||| || |||||| ||| |||| | |||| || |||| Sbjct 8799 GAAGTGCGCCACGAGCTGACCGCCAGCGATGCGGTGCAGCTGGCCGGCACGCTGACCCGT 8858 Query 16433 GATCTGCT 16440 || ||||| Sbjct 8859 GACCTGCT 8866 Score = 118 bits (130), Expect = 3e-22 Identities = 164/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 17319 CCGCCTGGATACCATTTACCAGACCAACATGCAGTCGGCGTATATGGCAGGGCGTTAC-- 17376 ||| ||||| ||||||| | ||||| | || || || |||||||| ||||| || Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTATCA 9773 Query 17377 GCGGCTGCCTACGAGGCCAGGGAAACCCACCCTTACTGGATGTATGTAGCGGTGATGGAC 17436 |||||||| |||| | || | || |||||| |||||| |||||||||||| Sbjct 9774 GCGGCTGCG--CGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 17437 GGCGTTACCCGACCCAGCCATGCCGCCCTGCATGGGAAGGTCTTCCGCTGGGACGATCCA 17496 || ||||| |||||||||||||| |||||||| ||| ||||| | |||||| | Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 17497 ATCTGGCAGCACATCACCCCGCCCAATGGCTACAACTGCCGGTGCCGG 17544 |||| | | | ||||| || |||||||||||||| |||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCGG 9939 >seq3855 Length=27953 Score = 134 bits (148), Expect = 3e-27 Identities = 230/330 (70%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 20741 AACACCTATGGCTGGCTGGGGCAGTTCCCCAAGCTGCGCGAGTGGATCGGTCAGCGTGTC 20800 || ||||| ||||||||||||||||| ||| | | || |||||| |||| ||| Sbjct 12038 AATACCTACGGCTGGCTGGGGCAGTTTCCCGCGTTCCGGGAGTGGGTCGGCTCGCGCAGT 11979 Query 20801 ATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACAAGCTCTTCGAATCGACCGTG 20860 ||| || | ||| || | | |||||| |||| ||||||| || ||| || || Sbjct 11978 ATCCAGCAGATGAAGGTCTATGGCTACGCCATCAACAACAAGACCTATGAAGGCACGGTC 11919 Query 20861 GGCGTGAAACGTACCGACATCGAGGACGACAACCTCGGCGTCTACGGACCGCTCATGCAG 20920 | | | | || || | ||||| ||||| ||||||| || | ||||| | ||| Sbjct 11918 GCCATTACCCGCGATGATTTTGAGGATGACAATCTCGGCGCGTATAGCCCGCTGTTTCAG 11859 Query 20921 GAAATGGGGCGCGCTGCCGGCGCGCATCCCGACGAGCTGGTCTT---CGCCCTGCTCAAG 20977 |||||||| ||||| |||| ||| || || || |||||||| || |||| ||| | Sbjct 11858 GAAATGGGCCGCGCCGCCGCCGCACAACCGGATGAGCTGGTGTTTACCGCCTTGCGC--- 11802 Query 20978 GCCGGCAACGCCAATCTCTGCTACGACGGTCAAAAC-TTCTTCGACACCGATCACCCGGT 21036 | |||||| | |||||||||||| |||| | || || || | ||| || ||||| Sbjct 11801 GACGGCAATAAAACCGACTGCTACGACGG-CAAACCTTTTTTTGATAGCGAACATCCGGT 11743 Query 21037 CTATCCGAACGTGGATGGCACCGGCACGGC 21066 ||||| || || || |||| |||||| || Sbjct 11742 GTATCCCAAGGTCGACGGCAGCGGCACCGC 11713 >seq1892 Length=4253 Score = 122 bits (134), Expect = 2e-23 Identities = 180/255 (71%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 12704 GTCATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTACGTCCTCGACCGC 12763 || |||||||||||| |||||| ||||||| | ||||| || ||||| | ||| | Sbjct 394 GTAATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAG 335 Query 12764 CAGTCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTACGGCACCGCCCGCCGCTGG 12823 |||||| ||| | || ||||| | ||||| | | ||| || || || |||||| Sbjct 334 ATGTCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGG 275 Query 12824 AAACAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAAGGCGCAATCGGCGCAGTTGCTG 12883 ||| | | || | | || ||| || |||||||||||| || | ||||| || || Sbjct 274 AAAAAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATG 215 Query 12884 GCCGGTGGTGGGCTGGAGGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACCCAGTTC 12943 || || ||||| |||||||| | | ||| ||| | |||| ||||| || |||| | Sbjct 214 GCGGGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTAC 155 Query 12944 CAGGCCACGATGGAA 12958 ||| ||||| ||||| Sbjct 154 CAGACCACGCTGGAA 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118103234713344