Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_020202.1 Length=37740 Score E Sequences producing significant alignments: (Bits) Value seq3688 134 3e-27 seq1892 111 4e-20 >seq3688 Length=22785 Score = 134 bits (148), Expect = 3e-27 Identities = 167/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 16868 CCGGCTGGAAACGATCTACCAGACCAACATGCAGTCGGCCTACATGGCCGGGCGCTAT-- 16925 ||||||||| || || | | ||||| | || || ||||| ||||||||||||||| Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTATCA 9773 Query 16926 GCCGCCGCATACGAGGCCAGGGAAACTCACCCTTACTGGATGTATGTGGCCGTCATGGAC 16985 || || || |||| | || | || |||||| ||||||||| || |||||| Sbjct 9774 GCGGCTGCG--CGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 16986 AGCGTCACCCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCG 17045 ||| |||||| ||||||||||| ||||| |||||| ||||||||| | ||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 17046 ATCTGGCAGCACATCATGCCGCCGAATGGCTACAACTGCCGGTGCCG 17092 |||| | | | | |||||||| |||||||||||||| ||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCG 9938 >seq1892 Length=4253 Score = 111 bits (122), Expect = 4e-20 Identities = 175/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 12660 ATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTACGTCCTCGACCGCCAG 12719 |||||||||||| |||||| ||||||| | ||||| || ||||| | ||| | | Sbjct 391 ATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAGATG 332 Query 12720 TCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTACGGCACCGCCCGCCGCTGGAAA 12779 ||||| ||| | || ||||| | ||||| | | ||| || || || ||||||||| Sbjct 331 TCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGGAAA 272 Query 12780 CAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAAGGCACAATCGGCGCAGTTGCTGGCC 12839 | | || | | || ||| || |||||||||||| | | ||||| || |||| Sbjct 271 AAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATGGCG 212 Query 12840 GGTGGTGGGCTGGAGGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACCCAGTTCCAG 12899 || ||||| |||||||| | | ||| ||| | |||| ||||| || |||| |||| Sbjct 211 GGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTACCAG 152 Query 12900 GCCACCATGGA 12910 |||| |||| Sbjct 151 ACCACGCTGGA 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120640715141632