Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2377 89.7 6e-13 seq110 87.8 2e-12 >seq2377 Length=23486 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 138201 CCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACA 138260 || || || || || || || ||||| ||||| || ||||||| || || || | ||| Sbjct 14883 CCCGGCCCGCCGCCACCGTGCGGAATGCAGAACGTTTTATGTAGGTTAAGGTGCGACACA 14942 Query 138261 TCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCG 138320 || || ||| || | || | | | |||||||||||| || | || || ||||| Sbjct 14943 TCCGCGCCAATGTAGCCCGGCGTGGTGATACCTACCTGTGCGTTCATGTTGGCGCCATCC 15002 Query 138321 AGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCA 138380 ||||| ||||| || || | | ||| || |||| ||| | | | ||| | |||| Sbjct 15003 AGATACACCTGTCCGCCGTGTTGATGGACAATCTGACACACTTCACGAATGGTCTCTTCA 15062 Query 138381 AATACACCATGAGTCGATGGATATGTAATCATAATACATGAGAG 138424 | ||||| || || || ||||| || | |||||| || ||||| Sbjct 15063 TAGACACCGTGCGTGGAAGGATAGGTCACCATAATGCAGGAGAG 15106 >seq110 Length=1639951 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 139296 GACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTA 139355 ||||| || || || | |||||| |||||||||||||| ||||| || ||||| ||||| Sbjct 787366 GACATGTTCGCCAGTAATGCTTGGGCTGTGCAGATGTTGCTGGTGGCCTTGTCCCTTCTG 787425 Query 139356 ATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGC 139393 || || ||||||| ||||| || || | |||||| || Sbjct 787426 ATGTGTTGCTCTCGCGTTTGGAGGGCCAGTCTGTACGC 787463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578969681679360