Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3127 221 2e-52 >seq3127 Length=15394 Score = 221 bits (244), Expect = 2e-52 Identities = 527/791 (67%), Gaps = 37/791 (5%) Strand=Plus/Plus Query 47760 AACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCTTC 47819 |||||| | ||| |||||| ||| || || || ||||| |||||||| ||||| | || Sbjct 1503 AACAAATTCACGAACAGAAATTTGTTTGCCAGTAGCAATGACAAAATCTTCAGGCTGATC 1562 Query 47820 TTGTTGAAGCATTAACCACATAGCCT-CGA-CATAATCTCTGGCATGTCCCCAGTCACGA 47877 |||||| ||||| | ||| | || | ||| |||||||| | || || ||||| ||||| Sbjct 1563 TTGTTGGAGCATCATCCA--TTGCATGCGAACATAATCTTTTGCGTGGCCCCAATCACGT 1620 Query 47878 AGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTTAAT 47937 | | || | ||| |||| ||| | || | || | |||| || || | | Sbjct 1621 AAAGAGTCCATATTACCTAAATAAAGGCACTGTTCAATTCCTTGGGAAATATTAGCAATT 1680 Query 47938 GCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAA 47997 || | ||||| || || |||||||||||||||||||| | ||||||||||||||| ||| Sbjct 1681 GCGCGAGTAATTTTTCGTGTTACAAAAGTTTCACCACGACGTGGAGATTCATGATTGAAA 1740 Query 47998 AGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACT-ATCCAGTA 48056 || ||||| |||| ||||| ||||| ||||| ||||||||||| | | | ||||| || Sbjct 1741 AGTATACCGTTACAAGCATAGATTCCATATGACTCACGATAGTT-TACAGTAATCCAATA 1799 Query 48057 CCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTG 48116 |||| | ||||| || | || ||||| | || || || || || |||||| | || Sbjct 1800 TGCATATAACTTTGCGACCGCGTATGGAGATCTAGGGTAAAACGGAGTTGTCTCTCTTTG 1859 Query 48117 TGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCT 48176 ||| | ||||| || ||||| || ||| || || || ||||| ||| | Sbjct 1860 AGGAATTTCTTGTACTAAGCCATATAGCTCAGATGTTGAAGCCTGATA-----GAATTTT 1914 Query 48177 ATCTTCCATCTCAAGC-----AAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCA 48231 |||| || | || | | | ||||| | | ||| | || || || ||| Sbjct 1915 GTCTTATTACTAAGGCCATTAATTCTTATCGCCTCTAATAATCTTAATGTTCCCATCGCA 1974 Query 48232 TCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCA 48291 || | | | ||||| || || |||||| ||||| || || || || ||| Sbjct 1975 TCAACATCAGCTGTATATTCTGGGGACTCAAAAGAAACAGCAACGTGTGATTGAGCACCA 2034 Query 48292 AGATTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCT 48351 |||||||| || || |||||||| | | ||||| || || | | |||| ||| || Sbjct 2035 AGATTATATATTTCGTCTGGTTGTATTTTCTGAACAAGACTAATAAGGTTTGAAGAATCA 2094 Query 48352 GTTAAGTCTCCAT-------AATGCAATTTT---------AAT--TGATC---ATAAATG 48390 || | || |||| |||| |||||| ||| |||| ||||| Sbjct 2095 GTCAGATCACCATTGTGAAGAATGAAATTTTGTTTATCTGAATGGCGATCTTGGTAAATA 2154 Query 48391 TGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATAC 48450 || |||| | | ||||||| | || | || || | |||||||| |||||| Sbjct 2155 TGGTCAACACGGTTAGTATTAAATTGTGATGAACGGCGTTTCAAGCCATGAACTTCATAC 2214 Query 48451 CCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATT 48510 || ||||| | | || || || | ||||| |||||||| ||||||| ||||| | | Sbjct 2215 CCTTTTTCTAATAAAAACTCAGCCAGATATGATCCATCTTGCCCTGTAACTCCAGTAACT 2274 Query 48511 AAAGCAACTTT 48521 || || | ||| Sbjct 2275 AATGCTATTTT 2285 Score = 95.1 bits (104), Expect = 2e-14 Identities = 250/378 (66%), Gaps = 8/378 (2%) Strand=Plus/Plus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || |||| |||||| ||| ||| ||| || |||||||| ||||| ||||| || Sbjct 618 GCTGGAATAACATGAGAATTTTGCGGGTGGAAGTTATCATTCATCCCATAAAGGTTCGTC 677 Query 47046 GGCATCAAAGAGATAGCATTAAAT-CCATACTGCTGATGGTATGCCTGACACATCTTGAT 47104 ||||| | | | | | | | ||||| || ||| || | | ||||| || || Sbjct 678 GGCATTAC-GCTACGGTAATCACGACCATATTGTCGATTATAGGATTCACACAATTTCAT 736 Query 47105 ACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAG 47164 || ||||| || ||||||||||||| ||||| | | ||||||| ||| ||| || Sbjct 737 GCCGGCAATTTTCGCAATAGCATAAGGTTCATTTGTTGCTTCAAGAATCCCAGTCAACAG 796 Query 47165 AT---ATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAG 47221 |||||| ||||| |||| | ||| |||||||| ||| ||||| | Sbjct 797 TGCCGATTCTTGT---ATAGGCTGTTTTGCGAGTTTAGGATAAATACAGCTCGAACCTAA 853 Query 47222 AAATAAAAGTTTCTTAACACCAAACTTACGTGCAGAATGAATGATGTTTGATTGAATCAT 47281 || | | ||| | ||||| | | || || || ||||| || || ||||| Sbjct 854 GAAGAGTAATTTTTGCACACCCGCTAAATGCGCGGAGTGGATGATATTACTTTCGATCAT 913 Query 47282 CAAATTATCATAGATGAAGTGTCCGGGATAATCCTTATTAGCACCAATACCACCCACCTT 47341 | ||| ||||| ||||| | | ||||| ||||||||| ||| || || || || Sbjct 914 TAGATTCTCATAAATGAACTCAGCAGGATAGGTATTATTAGCATGAATTCCCCCGACTTT 973 Query 47342 TGCAGCAGCAAGATAAAC 47359 ||| || ||||||||||| Sbjct 974 TGCTGCTGCAAGATAAAC 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665461391477760