Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq2351 432 3e-116 seq2333 125 5e-24 >seq2351 Length=10305 Score = 432 bits (478), Expect = 3e-116 Identities = 1083/1627 (67%), Gaps = 34/1627 (2%) Strand=Plus/Plus Query 9254 CCGACACCAATCATGTCTGGTGTTCGTACACCGACCCGCCAATTCAGCTCATGCGTAAAA 9313 || || || |||||||| || || ||||| || ||||| || |||||||| ||||| Sbjct 2589 CCAACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTG 2648 Query 9314 ATCGAAAGCGGTGATAGCCTAAAATCAATCAATGCAACATCAGGCGCAATCGTGAGTTAC 9373 || || |||| || ||||| | || || || || || || | || ||||||| ||| Sbjct 2649 ATTGAGTGCGGCGACAGCCTGGATTCCATTAACGCCACCTCCAGTGCTATCGTGAAATAC 2708 Query 9374 GTTTCACAGCGTGCAGGTATTGGCATTAACGCGGGTCGTATCCGAGCATTAGGTTCTGAG 9433 |||||||||||||| ||||| ||||||||||| |||||||| || || | ||| | Sbjct 2709 GTTTCACAGCGTGCCGGTATCGGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGCCCG 2768 Query 9434 ATTCGTGGTGGTGAAGCGGTACATACTGGTTGTATCCCATTCTACAAACACTTCCAAACA 9493 ||||| ||||||||||| | |||||||| ||||| || ||||| ||||| ||||| || Sbjct 2769 ATTCGCGGTGGTGAAGCATTCCATACTGGCTGTATTCCTTTCTATAAACATTTCCAGACC 2828 Query 9494 GCAGTGAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGCGGCAACGGTATTCTACCCA 9553 |||||||||| || || |||||||| || ||||| ||||||||| | || ||||| Sbjct 2829 GCAGTGAAATCCTGCTCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTACCCG 2888 Query 9554 ATGTGGCACCTAG-AGTACAAATCACTAATCGTACTCAAGAACAACCGTGGTATCGAAGA 9612 ||||||| || | ||| ||| | || | || || |||||||||||||| | |||| Sbjct 2889 CTGTGGCATCTGGAAGTGGAAAGC-CTGCTGGTGCTGAAGAACAACCGTGGCGTGGAAGG 2947 Query 9613 AAACCGTGTACGTCATATGGACTACGGTGTACAAATTAATGGCCTGATGTATAAGCGTCT 9672 ||||| || ||||| | || ||||| || || | || ||||||||| |||| || Sbjct 2948 CAACCGCGTGCGTCACCTCGATTACGGCGTGCAGTTGAACAAGCTGATGTATCAGCGCCT 3007 Query 9673 GCTGTCTGGTCAGAACATCACTTTATTC-TCACCTCATAGTGTACCGGGTCTATACGATG 9731 | | || || | ||||| | ||| | |||| | ||||| || || || || | Sbjct 3008 GGTCAAAGGACAAGAAATCACCCTGTTCAGCCCCTC-TGACGTACCCGGCCTGTATGACG 3066 Query 9732 CATACTTCGAAGACCAAGATAAGTTCGAGCGACTGTA-CACCA--AAGCGGAATCTGATC 9788 ||| |||| || || ||| ||||||| || | || || || | | || || Sbjct 3067 CATTTTTCGCCGATCAGGATGAGTTCGAACGCTTATATCAGCAGTATGAAAAAGACGA-- 3124 Query 9789 CATCAATCGAAAAAGACACAATCTCTGCTAAGGAAGCATTCAGCATACTAATGCAAGAGC 9848 || || || || | | | || || || ||| | | |||||||| | Sbjct 3125 CAGCATCCGCAAGA-AATCCATGAAAGCGGTCGATCTGTTCTCGCTGATGATGCAAGAAC 3183 Query 9849 GTGCTTCTACAGGTCGCATCTACATTCAGCACGTAGATCACTGTAACATTAACGGTCCTT 9908 | || ||||| || || |||||||||||||| || ||||| || |||| || | || | Sbjct 3184 GCGCCTCTACCGGCCGTATCTACATTCAGCATGTCGATCATTGCAACACCCACAGCCCGT 3243 Query 9909 TCGATGAGCGCGTTGCACCAGTACGCCAATCAAACCTATGTATGGAAATCGCACTACCAA 9968 | || | | | |||||||| || || || ||||| || ||||||| || || |||| Sbjct 3244 TTGAACCGACCATCGCACCAGTGCGTCAGTCCAACCTGTGCCTGGAAATTGCGCTGCCAA 3303 Query 9969 CCAAACCGTTGAATAACGTCGATGATCCTGATGGTGAAGTTGCGCTATGTACTCTATCTG 10028 || | || | | ||||| | || | ||||| | ||||| || || || || | Sbjct 3304 CCCACCCTGAGGAAGACGTCAACGACGAAAAAGGTGAGATCGCGCTCTGCACCCTCTCCG 3363 Query 10029 CATTCAACTTGGGTAAGATTGAATCGGTTGG-TGATTTTGAGCGTCTGTCTCGTATCGTT 10087 | |||||| | || ||||||| | ||| |||||| || | || | ||| | | Sbjct 3364 CGTTCAACCTTGG-CGCATTGAATAGCCTGGATGATTTGGAAGATTTGGCGCGTCTGGCA 3422 Query 10088 GTGCGTGCATTGGATAATCTGTTAGACTACCAAAACTACCCATTACCTGCCGCAGAACGT 10147 || ||||| |||| ||||| ||||| ||| | ||||| | | ||||| |||| Sbjct 3423 GTACGTGCGCTGGACGCCCTGTTGGACTATCAAGATTACCCGATTCTGGCCGCCAAACGC 3482 Query 10148 TCGACAATGCGCAGACGTAGCCTTGGTGTAGGTATTATCAATTACGCCCACTGGGTGGCT 10207 | ||| || | || | || || | || ||||||| | ||| ||| |||| Sbjct 3483 GGTGCTATGGGCCGCCGCACGCTCGGCATCGGCGTTATCAACTTTGCCTACTATCTGGCG 3542 Query 10208 AAGAATGGCCTAAAATACAGTGACGGTAGCGCAAACAACAAGACGCATGAGCTGATTGAA 10267 || || ||| | ||| || || || || ||||| |||||| || ||||| Sbjct 3543 AAAAACGGCGTTCGCTACTCCGATGGCAGTGCCAACAATCTGACGCACAAGACCTTTGAA 3602 Query 10268 GCTATGCAGTTCTACTTGCTACAAGCATCAATGGAACTGGCTAAAGAGAAGGGTATGTGT 10327 || || |||| |||| |||| ||||| |||| || ||||| || ||||| || Sbjct 3603 GCCATTCAGTACTACCTGCTGCAAGCCTCAAACGAGCTGGCGCGCGAACAGGGTGCCTGC 3662 Query 10328 TCTGGATTCGAAGACACTAAGTATGCCAAAGGTGTTATGCCAGTTGATCGTTATAAGTCT 10387 | | || || | |||| |||||| || || |||| |||| || || Sbjct 3663 CCGTGGTTTGACCAAACTACCTATGCCCGTGGCGTGCTGCCTATTGACACCTACAAACGC 3722 Query 10388 GATGTCGACAACACCCACACAGCAGAACTACAGATGAATTGGAATTGG------TTGCGT 10441 ||| | ||| || |||| || || | || ||| ||||| |||| Sbjct 3723 GATCTGGACGGCA--TTTGCAGC-GA---ACCGTTGCATTACGATTGGGAAGCACTGCG- 3775 Query 10442 AATGAGATTGTCCATA---ATGGCCTACGTAACTCTACTCTATCTGCATTCATGCCTTCG 10498 || | | || | | | || ||||||||||| || || ||||| || ||||| ||| Sbjct 3776 --CGACAGTATCAAAACACACGGTCTACGTAACTCCACGCTCTCTGCGTTGATGCCGTCG 3833 Query 10499 GAAACATCTTCTCAGGTATCTAACGCAACAAACGGCATCGAACCACCTCGTGGCTACATG 10558 ||||| || || || | || ||||| || ||||| ||||||||||| || || ||| Sbjct 3834 GAAACCTCGTCACAAATTTCCAACGCCACCAACGGTATCGAACCACCACGCGGTCACA-- 3891 Query 10559 TCAG--TTAAGCAGTCGAAGGATGGCATCTTAAAACAAATCGTACCGGGTTATGATAAAT 10616 |||| | ||| ||| || || ||||| || || | || |||| ||| || | Sbjct 3892 TCAGTATCAAGGCGTCAAAAGACGGCATTTTGCGCCAGGTGGTGCCGGATTACGAAACCC 3951 Query 10617 ACAAAGACCAATACGAGTTACTATGGAATATCAAAGACAACACTGGTTACTTGGAATTGG 10676 || || ||||| ||||| ||| | || |||| || ||| || || ||| Sbjct 3952 TGAAGGATGCCTACGAATTACTGTGGGAAATGCCGAACAATGACGGCTACCTGCAACTGG 4011 Query 10677 TTGCCATCATGCAGAAGTTTGTGGATCAGGCTATTTCAGCAAACACTAACTACGACCCAG 10736 ||| | |||||||||||||| |||||||||||||| || ||||| |||||||| || | Sbjct 4012 TTGGGCTGATGCAGAAGTTTGTCGATCAGGCTATTTCTGCCAACACCAACTACGATCCGG 4071 Query 10737 AAAACTACCCAGAAAGTAAGGTTCCAATCAAAAAGTTATTGCAAGATTTGGTGACATGTT 10796 || ||| | | || || || || ||| |||| || || ||| | || | Sbjct 4072 CGCGCTTCCCGTCAGGAAAAGTGCCGATGAAACAGTTGCTGACTGACTTGCTTACCGCCT 4131 Query 10797 ATAGACTCGGCATCAAGACACTGTACTACCACAACACACGAGATGGTGCTAGTGATGAAC 10856 ||| |||| | || || ||||| || || ||||| || || ||||| || | || Sbjct 4132 ATAAGTTCGGGTTGAAAACGCTGTATTATCAAAACACCCGTGACGGTGCCGAAGACGCAC 4191 Query 10857 AGAAAGA 10863 || |||| Sbjct 4192 AGGAAGA 4198 Score = 349 bits (386), Expect = 2e-91 Identities = 733/1083 (68%), Gaps = 55/1083 (5%) Strand=Plus/Plus Query 10940 AAAAACGACCAACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCCGTTAC 10999 |||||||| || || ||| ||||||||||| || || || ||||||||| | |||||| Sbjct 4367 AAAAACGATCAGCTTCTGGAACCGATGTTCTTTGGTCAGTCCGTTAACGTAGCGCGTTAC 4426 Query 11000 GACCAACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTGG 11059 || || || ||| |||| | || ||||| || | |||| || || || || |||||| Sbjct 4427 GATCAGCAAAAATATGAAATATTCGAGAAGCTGATAGAGAAACAGCTCTCCTTTTTCTGG 4486 Query 11060 CGTCCCGAAGAAGTTGATGTGTCACAAGACCGAATCGACTA-CAG----TAAAATGACTG 11114 ||||| ||||| || |||||||| | || || |||||||| ||| || | || Sbjct 4487 CGTCCAGAAGAGGTGGATGTGTCTCGCGATCGCATCGACTATCAGGCGCTACCAGAAC-- 4544 Query 11115 ATGCGGAGAAACACATCTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGATCC 11174 ||| | || ||||||||||| || || ||||| ||||||||| | || ||||| || | Sbjct 4545 ATG---AAAAGCACATCTTCATCAGCAATCTGAAATACCAAACACTGCTGGACTCCATTC 4601 Query 11175 AAGGCCGTAGCCCGAATATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAACTT 11234 |||| || |||||||| | || || | || | | || | ||||| | ||||| | Sbjct 4602 AAGGACGCAGCCCGAACGTCGCATTGTTACCGCTGATCTCCATCCCAGAGTTGGAAACCT 4661 Query 11235 GGGTAGAAACGTGG--AGCTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCAT 11292 || ||||||| ||| | |||| ||||||||||| || ||||| || || || ||||| Sbjct 4662 GGATAGAAACCTGGGCATTTTCA--GAAACCATCCATTCCCGTTCCTATACCCATATCAT 4719 Query 11293 TCGCAATATTGTCAATGACCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACAT 11352 |||||||||||||| || || | |||||||||||| | ||| ||| | | || Sbjct 4720 CCGCAATATTGTCAACGATCCGGCACTGGTGTTCGATGATATCGTTACCAATGAAGAGAT 4779 Query 11353 CCTAGAGCGAGCTAAAGATAT-TGCTCGTTACTACGACGATCTCATC------------- 11398 || | || || ||||| || | ||| || ||| |||||||| ||| Sbjct 4780 TCTGAAACGTGCAAAAGACATCTCCTC-TTTCTATGACGATCTGATCGAACTGACCAGCT 4838 Query 11399 -TTGGCA--TGC-----AAAG---AGCATGAGCTAAACGGCAAA-----CAC----ACAA 11438 || || ||| ||| |||| || | ||||| ||| ||| | Sbjct 4839 ATTATCACCTGCTGGGTGAAGGCACGCATCAGGTGAACGGTAAAACGGTCACCGTTAATC 4898 Query 11439 TGCGCGACCTAAAGAAAAAGTTGTACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAG 11498 ||| | | | |||||| || | || ||||| ||||| || || | | ||||| Sbjct 4899 TGCATGCCTTGAAGAAACAGCTTTATCTGTGCCTGATGAGCGTCAACGCGCTGGAAGCCA 4958 Query 11499 TTCGTTTCTACGTTAGTTTCGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAG 11558 | ||||| || || |||||||| || ||||| || || || |||||||| | ||||| | Sbjct 4959 TCCGTTTTTATGTCAGTTTCGCCTGCTCATTCGCCTTTGCCGAACGCGAACTGATGGAGG 5018 Query 11559 GTAATGCTAAAATCATCAAGCTTATTGCTCGTGATGAAGCACTACACCAAAGCGGTACAC 11618 | || || ||||| ||||| || || || || |||||||| || |||| | |||||| | Sbjct 5019 GCAACGCCAAAATTATCAAACTGATCGCCCGCGATGAAGCGCTGCACCTGACCGGTACCC 5078 Query 11619 AGCACATGCTGAAGATGTGGAACAACGGCACCGATGATATGGAAATGGCTTCTATCGCAC 11678 |||| |||||||| || | |||| || ||| ||||||||| ||||| Sbjct 5079 AGCATATGCTGAATCTGATGCGTTCCGGCCAGGACGATCCGGAAATGGCACAAATCGCCG 5138 Query 11679 ATGAGTGTCGCGAAGAGTCAATCGAAATATTCAAGATGGCCGAAGAACAAGAGAAAGACT 11738 | | ||| | | || | ||| | || | |||| | | | || |||||||| | Sbjct 5139 AAGCGTGCCAACAGGAATGCTACGACCTGTTTGTGCTGGCTGCACAGCAGGAGAAAGAGT 5198 Query 11739 GGGCAAACTATCTATTCAAAGATGGTGGTATGATCGGACTAAACAAAGATATTCTATGTG 11798 |||| | || || ||| || ||| ||||| || || |||||||| ||||| || Sbjct 5199 GGGCGGAATACCTGTTCCGCGACGGTTCGATGATTGGCCTGAACAAAGACATTCTCTGCC 5258 Query 11799 AATATGTTGAGTACATCACAAGCCACCGAATGAAGTATGTCGGGCTACC---TCCGCTAC 11855 | || ||||| |||||||| | ||| ||| | || ||||| || ||| | | Sbjct 5259 AGTACGTTGAATACATCACCAATATCCGCATGCAAGCGGTAGGGCTGCCCTTGCCGTTCC 5318 Query 11856 ACCCGGAAGCAACTAACCCAATCCCATGGATCAACAACTGGTTGGTTAGTGATAATGTTC 11915 | || || |||||||| ||||| ||||| || |||| |||| ||| || || | Sbjct 5319 AAACG--CGC-ACTAACCCGATCCCGTGGATTAATGCCTGGCTGGTCTCTGACAACGTGC 5375 Query 11916 AAGTTGCTCCACAGGAAGCCGAGATTAGTTCATACCTAACCGCACAAGTTGACTCGGACA 11975 | |||||||| || |||| || | ||||| || || || ||| |||| || || | Sbjct 5376 AGGTTGCTCCGCAAGAAGTGGAAGTGAGTTCTTATCTGGTCGGCCAAATTGATTCTGAGA 5435 Query 11976 TCA 11978 ||| Sbjct 5436 TCA 5438 >seq2333 Length=8475 Score = 125 bits (138), Expect = 5e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 6177 AATTCATTTCCATGATATGGATGAGTCGCCGTTCTACCCGATGTTCAACTGCTGTTTGGT 6236 |||||| | ||| ||| |||| | || ||||||| ||||||||||||||| || | Sbjct 5495 AATTCACTACCACGATCTGGACTACTCCCCGTTCTTCCCGATGTTCAACTGTATGCTGAT 5436 Query 6237 CGATCTTAAAGGTATGTTGGCGAATGGGTTTATGATGGGTAACGCAGACATCGAAACCCC 6296 ||| ||| |||| |||||| | || ||||| | |||||||||||| || || || | || Sbjct 5435 CGACCTTGAAGGCATGTTGACCAAGGGGTTCAAGATGGGTAACGCGGAGATTGAGCCACC 5376 Query 6297 TAAGTCAATCTCAACTGCGTGTGCTATCACTGCACAAATTATCGCTCAGGTTGCGTGCCA 6356 || || |||||||| ||| || | || || ||||| ||||| ||||| || |||| Sbjct 5375 AAAATCCATCTCAACCGCGACAGCAGTGACGGCCCAAATCATCGCGCAGGTGGCAAGCCA 5316 Query 6357 CCAATACGGTGGGGTTAGCCTCAATCGTCTTGATGAGGTGTTGGCACCATACGT 6410 | ||||| || | | | || ||| | ||||| | ||||||| | ||| Sbjct 5315 CATCTACGGCGGCACCACCATTAACCGTATCGATGAAATTCTGGCACCGTTCGT 5262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342956213835392