Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq3888 176 1e-39 seq3336 174 5e-39 seq2376 102 2e-17 seq2972 80.6 8e-11 >seq3888 Length=1800 Score = 176 bits (194), Expect = 1e-39 Identities = 269/381 (71%), Gaps = 17/381 (4%) Strand=Plus/Plus Query 34676 TCACGATTAATGCTTCTGATTAGAATTTTTCCGCCTGGTTTGCGATAAAGTTGCTTGATG 34735 || || |||| ||| | |||| | |||||||| || | || |||||||| || || Sbjct 441 TCGCGGTTAAAGCTACGAATTATCAGCTTTCCGCCGGGCTGACGGTAAAGTTGTTTTATA 500 Query 34736 CGCTTCAG------ATCTCC-----CTGGTTGA----TGGCGTAGAGTTCGCCGTCAATA 34780 || ||||| |||||| |||||||| ||||||| | || ||||||| | Sbjct 501 CGTTTCAGTTGTTCATCTCCTGCTCCTGGTTGACCTATGGCGTAAATTTTACCGTCAACA 560 Query 34781 ACTCGCTTATTACCAGTATCAACAGCTACAGTTGCACCATCAGGAATGACTGGCTCCATA 34840 | ||||| || || |||| || || || | || ||||| || ||||| |||||| Sbjct 561 ATCCGCTTGTTGTTCGTGTCAATGGCCACTGTAGTGCCGTCAGGGATAACTGGTTCCATA 620 Query 34841 CTGTCTCCTGATGCAGGAAAACACAGGACACCAGAACCATCACTATTGGCTCCAACTCGA 34900 |||| ||| ||| || || || | || |||||||||||| ||| || || | || Sbjct 621 CTGTTTCCCCTTGCTGGGAAGCAGATAACGCCAGAACCATCAGAATTAGCGCCGATTCTT 680 Query 34901 CGGAGCGTTGCTTTTGAAAAGCGCAATTTAAAACCGTTGTGATCCTCA-TCGTGTACTCG 34959 || || || | ||| || || |||| |||| ||||||||||| ||| || || | ||| Sbjct 681 CGAAGGGTAGATTTAGAGAATCGCAGCATAAAGCCGTTGTGATCTTCACTCATG-ATTCG 739 Query 34960 TCCATCACCACACGCAAACTCGATATCCTTCAGAAACGGTACTTCCACCTCATCGTCAGG 35019 ||| | ||||| ||||| || ||||| |||||||| | |||||||| ||||| || | Sbjct 740 TCCGTTCCCACAAGCAAATTCAATATCTTTCAGAAAATGCACTTCCACTTCATCATCGTG 799 Query 35020 TAGGGGGGTATTTTTGTCCCA 35040 || ||||| || ||||||| Sbjct 800 CAGTGGGGTTTTGCTGTCCCA 820 >seq3336 Length=1822 Score = 174 bits (192), Expect = 5e-39 Identities = 297/431 (69%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 9040 AAAGGTGCCGGTACCACGCTCTGGCTGTACACCGGAACGGGTAACGCTTTCGCCAACCCA 9099 |||||||| || |||||||| ||| | | ||||| || || || ||| || |||||| Sbjct 1292 AAAGGTGCAGGAACCACGCTTTGGGTTTTTACCGGCACCGGCGACCCTTATGCAAACCCA 1351 Query 9100 CTCTCTGATATCGACTGGAATCGCCTGGCGAAAATCAAAGAACTCACGCCGGGCGAAATG 9159 || | || |||| || |||||| | ||||||| || ||||||||||| ||| Sbjct 1352 ACGGGCGACAGCGGTTGGACCCGTCTGGCGCAGGTCAAAGAGCTGACGCCGGGCGAGATG 1411 Query 9160 ACCGCAGAATCGTATGACGACACCTACCTCGACGACGAGGACGCCGACTGGAACGCGACC 9219 || || ||||| | || ||||||| || |||| || |||||| |||| || || Sbjct 1412 ACGGCGGAATCCTTCGATAACACCTATCTGGACGGTGAAAACGCCGGGTGGAGCGATACG 1471 Query 9220 GCTCAGGGGGCAAAATCTGCTGGCGACACCTCTTTCACCCTCGCCTGGAAGCCGGGTGAA 9279 || ||||| ||||| || || |||||| ||||||||| || ||||| | || || Sbjct 1472 GCACAGGGCATCAAATCCGCGGGGGACACCAGTTTCACCCTGGCATGGAAAGCCGGCGAT 1531 Query 9280 GAAGGGCAAAAAGACCTGGTCGCATGGTTTATTGATGGCTCAGTACGCTATTACAAAATC 9339 ||||| | || ||||| | ||||||| || | || ||| ||||||||| Sbjct 1532 CTGGGGCAGCAGGAACTGGTGGATTGGTTTACCTCCGGTGCCGTGCGCGGCTACAAAATC 1591 Query 9340 AAATATCCGAATGGTACCGTCGACGTTTTCCGCGGTTGGTGCAGCAGCCTGGGTAAAGCC 9399 || ||| | || || | || || || || || ||| ||| | || ||| | Sbjct 1592 AAGTATGCCAACGGCGCAGTTGATGTGTTTAAGGGCTGGGTCAGTGCGTTAGGAAAATCT 1651 Query 9400 ATCCCGGCAAAAGAGGTTATTACCCGCACAGCGAAAATCACCAACACCGGCAAGCCGGAG 9459 || || | || || || || |||||||| ||||| ||||||| ||||||||||||| Sbjct 1652 ATTCCTGTTAAGGAAGTGATCACCCGCACCGCGAAGGTCACCAATACCGGCAAGCCGGTA 1711 Query 9460 CTGGCTGAAGA 9470 |||| ||||| Sbjct 1712 TTGGCGGAAGA 1722 >seq2376 Length=5660 Score = 102 bits (112), Expect = 2e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 25810 TGGTCGCTTCATGATATGAGGCGGACGATAGCCACAAATCTCTCTGAGTTAGGTTGCCCG 25869 ||||| |||||||| || | | ||| | || ||| || ||||| | || ||| Sbjct 4909 TGGTCACTTCATGACTTGCGAAGAACGGTTGCGACACGCCTTTCTGAACTTGGCGCGCCG 4968 Query 25870 CCGCACGTAATTGAAAAGCTGCTCGGGCATCAGATGGTGGGGGTTATGGCGCATTACAAC 25929 || ||||| |||||||| ||||| ||||||||||||| || |||||||| | |||||| Sbjct 4969 CCTCACGTTATTGAAAAACTGCTTGGGCATCAGATGGGTGGCGTTATGGCCCGTTACAAT 5028 Query 25930 CTTCATGACTATATCGATGATCAGAAACACTGGCTCCGCGTTTGGCAGAGCCATCTTGA 25988 || ||||||||| | | ||||| | || ||| | |||||||| |||||||| Sbjct 5029 CTGCATGACTATCTGGCAGATCAACACCAGTGGTTGAAAATTTGGCAGGAACATCTTGA 5087 >seq2972 Length=2207 Score = 80.6 bits (88), Expect = 8e-11 Identities = 133/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 17665 AAGTGGGCTCTGTATTCAATCGCCCAGTACTGTGACGAAATGGTTTCCGACGGG---GCC 17721 |||||| | ||||| ||||| ||||| || ||| | ||||| | || || | | Sbjct 1982 AAGTGGACGCTGTACCAGATCGCGCAGTATTGCGACCAGTTGGTTCCTGATGGACGTGGC 2041 Query 17722 GGT---GGCACCGAACCGCGTTTCACCTGCAACGTTTTCATTCAGAGCCAGGAGGACGCC 17778 ||| ||||| ||||| ||||| ||| | || | || ||| ||||| || ||| Sbjct 2042 GGTAATGGCACTGAACCACGTTTTTTATGCGATGTGTATATCCAGTCGCAGGAAGAAGCC 2101 Query 17779 TGGCAGGTACTTAACGATCTCGCCGCGGTATTTCGTGGAATAACGTTCTGGGGCAACGAT 17838 ||| || ||||||||||| ||||| | ||||| || |||||||||||||| | Sbjct 2102 TGGACCGTGCTTAACGATCTGGCCGCCATTTTTCGCGGTGCTACGTTCTGGGGCAATAAC 2161 Query 17839 CAGATTTATGT 17849 ||||| |||| Sbjct 2162 CAGATGAATGT 2172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147551447048192