Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq10 123 4e-23 seq29 98.7 2e-15 seq676 87.8 3e-12 >seq10 Length=2352850 Score = 123 bits (136), Expect = 4e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | || | |||||| ||| || ||||| || | ||||| Sbjct 820105 CGAAGAACGAGATGGAGGGTGGACTCTTTTTGAATGTTGTAGTCTGAAAGAGTTCTTCCG 820046 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||| || || || || || | ||||||||| || || || ||||||||| Sbjct 820045 TCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTA 819986 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||| | |||| |||||| || || | || ||||| || || || Sbjct 819985 TCTTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGCTTCGACTTCCAGGGTGATG 819926 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || | || || ||||| || |||||| Sbjct 819925 GTTTTGCCAGTCAATGTCTTAACAAAAATCTGCATT 819890 >seq29 Length=2726036 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||||||||||||| || || || || ||||| || || ||||| || || || || Sbjct 1034204 ATCCTCTAATTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTT 1034145 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| ||| | |||| || ||||| |||| |||||| || || || || Sbjct 1034144 ATCCTGAATCTTGGCTTTGACATTTTCGATCGTATCAGAAGCCTCAACCTCAAGGGTGAT 1034085 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || | || || || || || |||||| Sbjct 1034084 GGTCTTCCCCGTCAATGTCTTGACGAAAATCTGCATT 1034048 >seq676 Length=265522 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| || || || | |||||| || || || || ||||| || ||| Sbjct 178400 TCTTCCAATTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATTCCCTCCTTA 178459 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | || || ||||| || | ||| || || || || || Sbjct 178460 TCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCAGAGGCCTCGACCTCGAGGGTGATG 178519 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || |||||||| || ||||| |||||||| Sbjct 178520 GTCTTGCCCGTCAGCGTTTTCACGAATATCTGCATTTT 178557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899609777141760