Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq10 127 3e-24 >seq10 Length=2352850 Score = 127 bits (140), Expect = 3e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| ||||||||||| ||||| || || | |||||||||| || Sbjct 819890 AATGCAGATTTTTGTTAAGACATTGACTGGCAAAACCATCACCCTGGAAGTCGAAGCATC 819949 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | |||| ||| || ||| |||||| |||||||||||||| || || ||||| || Sbjct 819950 TGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCAGATCA 820009 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||| | || ||||| || | || || |||||| | ||||| || || Sbjct 820010 ACAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGACGGAAGAACTCTTTCAGACTACAA 820069 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || || ||| Sbjct 820070 CATTCAAAAAGAGTCCACCCTCCAT 820094 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| |||||||| || || ||||| || || || || | |||| Sbjct 818751 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACCATTACGTTGGAGGTTGAGGCTTCT 818810 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| || || || || ||||| || || |||||||| || Sbjct 818811 GACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 818870 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | || |||||||||||||| ||| |||||| | || ||||||||| Sbjct 818871 CAACGTCTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTATAAT 818930 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 818931 ATTCAGAAAGAGTCCACCCTTCA 818953 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| || || || | || ||||| | ||| Sbjct 818979 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCT 819038 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| || || || || ||||| || || |||||||| || Sbjct 819039 GACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 819098 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || |||||||||||||| ||| |||||| | || ||||||||| Sbjct 819099 CAACGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTATAAT 819158 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 819159 ATTCAGAAAGAGTCCACCCTTCA 819181 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| || || || | || ||||| | ||| Sbjct 819207 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCT 819266 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| || || || || ||||| || || |||||||| || Sbjct 819267 GACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 819326 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || |||||||||||||| ||| |||||| | || ||||||||| Sbjct 819327 CAACGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTATAAT 819386 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 819387 ATTCAGAAAGAGTCCACCCTTCA 819409 Score = 109 bits (120), Expect = 8e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| || || || | || ||||| | ||| Sbjct 819435 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCT 819494 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| || || || || ||||| || || |||||||| || Sbjct 819495 GACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 819554 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | || |||||||||||||| ||| |||||| | || ||||||||| Sbjct 819555 CAACGTCTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCAGAACCCTTTCTGATTATAAT 819614 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 819615 ATTCAGAAAGAGTCCACCCTTCA 819637 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| || || || ||| | ||||| || | ||| Sbjct 820803 ATGCAGATCTTTGTAAAGACATTGACTGGGAAGACCATCACACTGGAAGTAGAGGCCTCT 820862 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || ||| || || || || ||||| || || || ||||| || Sbjct 820863 GACACTATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCAG 820922 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | || ||||| || | || ||| ||||| | || ||||| ||| Sbjct 820923 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGGAGAACACTCTCTGATTACAAT 820982 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || || ||| Sbjct 820983 ATCCAGAAAGAGTCCACTCTCCAT 821006 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| || || || | || ||||| | ||| Sbjct 819663 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCT 819722 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| || || || || ||||| || || |||||||| || Sbjct 819723 GACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 819782 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | || ||||||||| | |||||| | |||| | ||||| || || Sbjct 819783 CAACGTCTGATCTTCGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCAGACTACAAC 819842 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 819843 AT-TCAAAAG 819851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731835699148800