Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10 159 6e-34 seq676 109 1e-18 seq14 87.8 3e-12 >seq10 Length=2352850 Score = 159 bits (176), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||| || | || | ||| | || | |||||| ||| || || ||| Sbjct 820120 ATTCCTCCTCGAAGACGAAGAACGAGATGGAGGGTGGACTCTTTTTGAATGTTGTAGTCT 820061 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | |||| ||||||||||||||||| || || || | |||||| || ||| Sbjct 820060 GAAAGAGTTCTTCCGTCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGATCTGGT 820001 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| ||| ||||| ||||| || || | ||| Sbjct 820000 GGGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGCTTCG 819941 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || |||||||| ||||| ||||| |||| || ||||||||| Sbjct 819940 ACTTCCAGGGTGATGGTTTTGCCAGTCAATGTCTTAACAAAAATCTGCATT 819890 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||| || | || | ||| | ||| | |||||| ||||| ||||| Sbjct 821032 ATTCCTCCTCGAAGACGAAGAACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCA 820973 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || ||||||||||||||||| || || || | ||| ||||| || Sbjct 820972 GAGAGTGTTCTCCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGG 820913 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || || || ||| ||||| ||||| || || | ||| Sbjct 820912 GGAATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCAGAGGCCTCT 820853 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| || ||||| ||||| || | || |||||||| Sbjct 820852 ACTTCCAGTGTGATGGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 820803 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| || || | || || || | |||| ||||| || || || || || Sbjct 821257 CCACCTCTGAGACGAAGAACCAAGTGGAGTGTAGATTCTTTCTGGATGTTGTAGTCGGAC 821198 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | || |||| ||||||||||||||| || || | |||||| || || || Sbjct 821197 AAAGTTCTACCATCTTCCAGTTGTTTACCAGCAAAGATCAAACGCTGTTGATCTGGAGGA 821138 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || || || || ||||| || || || || || || || | |||||| Sbjct 821137 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGAGGCCTCTACT 821078 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| || ||||||| ||||| | ||| ||||||||| Sbjct 821077 TCGAGTGTGATGGTCTTGCCAGTTAGGGTTTTGACGAAAATCTGCATT 821030 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||| || | || | ||| | ||| | |||||| ||||| ||||| Sbjct 820576 ATTCCTCCTCGAAGACGAAGAACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCA 820517 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || ||||| ||||||||||| || || || | ||| ||||| || Sbjct 820516 GAGAGTGTTCTCCCATCCTCCAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGG 820457 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || || || ||||| || || || || | ||| Sbjct 820456 GGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGCTTCG 820397 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||||||| || || || || || || | || || | ||||||||||||| Sbjct 820396 ACTTCTAGGGTGATCGTCTTTCCCGTGAGGGTCTTCACGAATATCTGCATT 820346 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| |||| || || || | ||| | || || || || || ||| Sbjct 820804 ATGCCACCTCGAAGACGTAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCT 820745 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || | | || ||||||||||||||||| || || | | |||||||| || Sbjct 820744 GAGAGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGTTGGTCTGGA 820685 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| |||||||| || || || || || || || || || || | ||| Sbjct 820684 GGAATTCCCTCTTTATCCTGGATCTTCGCCTTGACGTTTTCAATTGTGTCAGAGGCCTCT 820625 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || ||||| || ||||| | || || | || ||||||||| Sbjct 820624 ACTTCGAGTGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAAATCTGCATT 820574 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| || | || | || | || | |||||| |||||||||||| Sbjct 818980 ATGCCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCA 818921 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | || |||||||| || || | | || ||||| || Sbjct 818920 GAAAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGCTGGTCTGGA 818861 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || || || ||| ||||| || || || || | || Sbjct 818860 GGGATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGCCTCA 818801 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||| || ||||| || ||||| | ||| |||||||| Sbjct 818800 ACCTCCAACGTAATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 818751 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| || | || | || | || | |||||| |||||||||||| Sbjct 819208 ATGCCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCA 819149 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | || |||||||| || || || | || ||||| || Sbjct 819148 GAAAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGCTGGTCTGGA 819089 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || || || ||| ||||| || || || || | || Sbjct 819088 GGGATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCG 819029 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| || || || | ||| |||||||| Sbjct 819028 ACCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCAT 818979 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| || | || | || | || | |||||| |||||||||||| Sbjct 819436 ATGCCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCA 819377 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | || |||||||| || || || | || ||||| || Sbjct 819376 GAAAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGCTGGTCTGGA 819317 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || || || ||| ||||| || || || || | || Sbjct 819316 GGGATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCG 819257 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| || || || | ||| |||||||| Sbjct 819256 ACCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCAT 819207 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || || || | || | ||||| || || || ||| Sbjct 820348 ATTCCTCCTCTCAGACGCAGGACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAGTCT 820289 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||| |||||||||||| || || || | ||| ||||| || Sbjct 820288 GACAGAGTTCTGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGG 820229 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || || || || || || || | || Sbjct 820228 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATCGTGTCAGATGCCTCC 820169 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || || || |||||||| || ||||| | ||| ||||||||| Sbjct 820168 ACTTCAAGTGTGATAGTCTTACCAGTCAAAGTTTTCACGAAAATCTGCATT 820118 >seq676 Length=265522 Score = 109 bits (120), Expect = 1e-18 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | |||||| | || || || | ||||| || || || || ||||| Sbjct 178325 ATACCTCCACGAAGTCGAAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCA 178384 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| ||||||||||| ||||| || || | |||||| ||||| || Sbjct 178385 GAAAGAGTGCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGG 178444 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || ||||| || || || || || || || ||||| || | || Sbjct 178445 GGAATTCCCTCCTTATCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCAGAGGCCTCG 178504 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || ||||| || || || | ||||| | ||||||||||||||| Sbjct 178505 ACCTCGAGGGTGATGGTCTTGCCCGTCAGCGTTTTCACGAATATCTGCATTTT 178557 >seq14 Length=2234412 Score = 87.8 bits (96), Expect = 3e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || | | ||| | || || | ||||||||||| ||||| | || Sbjct 1933580 AATGTTGTAATCAGACAGGGTGCGTCCATCCTCGAGCTGTTTACCAGCGAAAATCAGCCT 1933521 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| || || || || || || || || ||||| ||| ||||| || || Sbjct 1933520 CTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATTGT 1933461 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | || || || || || ||||| || ||||||| ||||| | ||| ||||| Sbjct 1933460 GTCAGAAGCCTCCACCTCGAGGGTGATGGTCTTCCCAGTTAGGGTTTTTACGAAGATCTG 1933401 Query 172067 CATTTT 172072 ||| || Sbjct 1933400 CATGTT 1933395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905091105254400