Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq3839 235 8e-57 >seq3839 Length=10135 Score = 235 bits (260), Expect = 8e-57 Identities = 236/304 (78%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 98895 ATGAAACAGTATCAAGATTTAATGGCTGAAG-TCTTTGCGAAAGGTACGCCGAAGAAAGA 98953 ||||||||||||| || || ||| | |||| | ||| | || ||||||||| ||| Sbjct 1882 ATGAAACAGTATCTGGAATTGATG-CAGAAGGTGCTTGATGAGGGAACGCCGAAGGGAGA 1824 Query 98954 CCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAAGA 99013 | | ||||| || || || | || || ||||||||||||||||||||||| ||||||| Sbjct 1823 CAGAACCGGCACCGGAACCTTATCGATTTTCGGCCACCAGATGCGTTTCAATCTGCAAGA 1764 Query 99014 AGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTGCT 99073 ||||| |||||||| || |||||||| ||||| |||||||| || || || || ||| | Sbjct 1763 CGGTTTTCCGCTGGTGACCACCAAGCGCTGCCATCTGCGCTCAATCATTCACGAGCTGTT 1704 Query 99074 GTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATTTG 99133 ||||||||| || || |||||||| | || ||| | || ||| || | |||||| Sbjct 1703 GTGGTTCCTCAACGGTGACACCAACGTTGGCTATCTGCACGACAATAAAGTTAGCATTTG 1644 Query 99134 GGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGGGC 99193 ||| |||||||| || | |||||||| || || ||||||||||||||||||||||| || Sbjct 1643 GGATGAATGGGCCGATGAGAATGGCGATCTTGGGCCGGTATACGGTAAGCAGTGGCGCGC 1584 Query 99194 ATGG 99197 ||| Sbjct 1583 TTGG 1580 Score = 136 bits (150), Expect = 6e-27 Identities = 223/316 (71%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 99591 TCTTGTCAGCTCTATCAGCG-TAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAACATCGC 99649 || |||||||| || ||||| | ||| || |||||| | ||| ||||||| || || || Sbjct 1405 TCCTGTCAGCTTTACCAGCGCTCGTGT-GATGTGTTCCTCGGTCTGCCGTTCAATATTGC 1347 Query 99650 GTCGTATGCTCTACTGATTCACATGTTTGCACAGCAG-GCGAATATGGCGGTGGGCGATT 99708 ||||| || ||| | || ||| | || |||||| |||| || | | ||||| | Sbjct 1346 CAGTTATGCACTGCTGGTGCATATGATGGCGCAGCAGTGCGACCTTGAAG-TCGGCGACT 1288 Query 99709 TCGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCACGTACTC 99768 | ||||||||||| ||||| |||||||| |||||| |||| ||| | | | | Sbjct 1287 TTGTCTGGACCGGTGGTGACACCCATCTGTACAACAACCATATGGAGCAGACGCATTTGC 1228 Query 99769 AGTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGACTCTA 99828 | | | ||| || ||| |||| || |||| || ||||| || | ||| Sbjct 1227 AACTGAGCCGTGAGCCAAAAGCGCTGCCGAAATTGATCATTAAACGCCGTCCTGCCTCGC 1168 Query 99829 TCTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGCTATTA 99888 | || |||||| ||||||| ||||| || || ||||||||||| || || || || || | Sbjct 1167 TGTTTGACTATCAGTTCGATGATTTCGAAATAGAAGGCTACGATCCGCATCCTGCCATCA 1108 Query 99889 AAGCACCGGTGGCGAT 99904 | |||||||||||||| Sbjct 1107 AGGCACCGGTGGCGAT 1092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716601254814720