Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq2852 188 1e-43 seq3842 156 8e-34 seq2657 105 1e-18 >seq2852 Length=1514 Score = 188 bits (208), Expect = 1e-43 Identities = 365/534 (68%), Gaps = 15/534 (3%) Strand=Plus/Plus Query 22349 TGTGTATCGCTCAAATGCTAGTGCTTCAGCTTTTCTTTCGAATTTCCTGCGGATGCGTTT 22408 |||||| |||||||| |||| ||||| | | || | || ||| || || ||||| || Sbjct 625 TGTGTAGCGCTCAAAGGCTACCGCTTCCGTTCTTTTCTCAAATCGCCGCCGAATGCGCTT 684 Query 22409 TCCGTCGCGACCGCGAGGTCTAATGTCCACTTCATAGCGACCATCATCGAGCTTCTTAAT 22468 ||| ||| ||| || | ||||||||||| || |||| |||| ||||||||||| Sbjct 685 CCCGCTGCGTCCGATCGGGCGTATGTCCACTTCGTATTGACCCCCATCAAGCTTCTTAAT 744 Query 22469 TGCCATAAGAAAGCCCTCCGGCGCTGTATTCACCATCTTGGTAGCAAATGGTGAAAATGT 22528 | ||||||||||||||||| | | | | ||| ||| | ||| |||| || Sbjct 745 CGACATAAGAAAGCCCTCCGAGGAAGCA---ATCATTTTGAAAATCAATATAAAAAAGGT 801 Query 22529 AATCTTTATATAGAGTTAGCCAATCCTTTTCGCGGAGTGGTTGGACTCTGTTGACTCTGG 22588 || || | | ||||||||| | | |||| |||| || |||| ||| | Sbjct 802 AAGTAAAGTAAACACTTAGCCAATTTTGTGATCGGATTGGTGAGATATTGTTTCTTCTAG 861 Query 22589 CCCAATGTGCGCGAGAGCCGGTGCGATTTGTCCTGCGTCCGGCGCGGTTTTATCTGTCAT 22648 ||||||||| ||||| |||||||| | || || || ||||| || || ||||||||||| Sbjct 862 CCCAATGTGTGCGAGGGCCGGTGCTACCTGACCAGCTTCCGGTGCTGTCTTATCTGTCAT 921 Query 22649 AAGCCATAGAGCATATTTTTGGAATGTGGGATGCATAGTGATTTTTAGCAAA----GCTG 22704 ||||||| | |||||||| || | | ||||| | || |||| | ||| Sbjct 922 TAGCCATAAGGTATATTTTTCAAA--TTGCTTGCAT-CTAGTTAGAAGCATAACCGACTG 978 Query 22705 T--GCCACCGGGTTCAAAGTTTCCTCCTTCATATTTTTTAAGTGTGCTTAGCGGTAACTC 22762 | |||| ||||| || |||||| || || ||||| | || |||| | | | | Sbjct 979 TAGGCCA---GGTTCTGCGTGTCCTCCCTCGTAATTTTTTAACGTACTTAATGCCATCCC 1035 Query 22763 TATGATTTCACAGAATTTTGATTGGCTTAGCCCTTCAGCCTCACGCAAGGCCTTAATCTT 22822 |||||||||||||||| ||||| ||| || ||||||| | | ||| || || || Sbjct 1036 GCTGATTTCACAGAATTTCGATTGAGTTAAACCCTCAGCCTTTCTAATGGCTTTGATTTT 1095 Query 22823 TTCGCTTAATTTCATTTGACATGGTGCCTATATAGGGACTAAATTCCCTCAAAA 22876 || | | | ||||||||| ||| || | || ||||| ||||| ||||| Sbjct 1096 TTGTCCCATATCCATTTGACAAGGTTCCAAGTCAGAGACTATATTCCTGCAAAA 1149 >seq3842 Length=22882 Score = 156 bits (172), Expect = 8e-34 Identities = 234/329 (71%), Gaps = 10/329 (3%) Strand=Plus/Plus Query 9395 TATCACCCTCGACACCCCGGAGGTGGTATGCACCAACAAACTGATGACGGCGACGCTTGA 9454 ||||| ||| || || ||||| ||| | || |||||||| |||| ||| | ||||| || Sbjct 19795 TATCATCCTAGATACGCCGGAAGTGATTTGTACCAACAAGCTGACGACAGGCACGCTGGA 19854 Query 9455 GGTGCAGAAAGGCGGCACCATGCGGGGAAACATCGAACATACCGGTGGCACGTTGAAATC 9514 ||||| |||||||| |||| || ||||| | ||| | ||| ||| |||| | || Sbjct 19855 AGTGCAAAAAGGCGGAGAAATGCACGGCAACATTGCACACAGCGGCGGCGCGTTCACCTC 19914 Query 9515 AAACGGCGTGCAGGTCGATAACCACGGTCACGGCGGCGTACAACGGGGCGGTAACTGGAC 9574 |||||||||||| | || || ||||| || |||| ||||| | || || | ||||| Sbjct 19915 CAACGGCGTGCAGATTGACAATCACGGCCATGGCGCAGTACAGCACGGTGGCAGTTGGAC 19974 Query 9575 GGAGGGCACAAAATGACAGCGCGTTATCTGGGGATGAACCGCAATACCGGCATAGGTATC 9634 ||||||||| || ||| ||||||||| || ||||||| | | |||| | || | Sbjct 19975 GGAGGGCACCAAGTGAGCGCGCGTTATACCGGCATGAACCCCGA---CGGCGTTGGCGT- 20030 Query 9635 AGTGACAGTGAGCATATCAGCCAGAGCA-----TGCGCGACATTCTGCTGACGCCGGTCG 9689 | |||| | | | ||||| | ||| |||||||||||||| || ||| | | Sbjct 20031 ACTGACGGATA-CCGATCAGTTATGGCATTCCGTGCGCGACATTCTGACCACACCGCTGG 20089 Query 9690 GCTCGCGGGTAATGCGTCGTGAATATGGC 9718 || || || ||||| |||||||| ||| Sbjct 20090 CGTCCCGCGTCATGCGCCGTGAATACGGC 20118 Score = 122 bits (134), Expect = 2e-23 Identities = 273/410 (67%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 11635 GGCGGCTTCTGGATGCGTGAGCTTGGCCTTTACGACGATGAAGGGACGCTGATTGCTGTT 11694 || || |||||||| ||||| | ||||| | || | |||||| | ||||||| ||| Sbjct 22085 GGGGGATTCTGGATACGTGAAATCGGCCTGTTTGATGCTGAAGGTAATTTGATTGCGGTT 22144 Query 11695 GCCAATATGGCCGAAAGCTACAAGCCAGAACTGGCTGAGGGCTCAGGGCGTGCGCAGACA 11754 ||||| ||||||| ||| ||||| || || || ||| || ||| ||||| Sbjct 22145 GCCAACTGCGCCGAAACCTATAAGCCGCAATTGCAGGAAGGCAGCGGACGTATTCAGACC 22204 Query 11755 TGCCGCATGGTCATTATTGTCAGCAGTGTCGAGTCTGTGGCGCTGTCCATTGACTCAACG 11814 |||||| | | |||||| ||| || | || |||| ||||| | || Sbjct 22205 GTGCGCATGATTTTGATTGTCTCCAGCACAGAAACAGTATCGCTTAAAATTGATCCGGCG 22264 Query 11815 ATGGTGATGGCGACGCAGGATTATGTCGACGACAGACTCGCCGAACATGAAAAATCCCGT 11874 ||||| |||| |||| | ||||| || || |||| ||||||||| |||| Sbjct 22265 GTGGTGCTGGCAACGCGTGGCTATGTGGATGATGCTATCGCTACGCATGAAAAAAGCCGT 22324 Query 11875 CGTCATCCTGATGCCACTCTTAAAGAAAAAGGGTTTACTCAGCTCAGTAACGCGACAGAC 11934 ||||| || || || ||| | | |||||| ||| || | || || || || ||| Sbjct 22325 AAACATCCAGACGCAACGCTTGAGGCAAAAGGCTTTGTGCAATTGAGCAATGCCACGGAC 22384 Query 11935 AGCGAGTCTGAAACGCTCGCAGCGACGCCGAAAGCTGTTAAGGCAGCATACGACCTTGCT 11994 || | |||| || | || || ||||||||||| || || || | || ||||| || Sbjct 22385 AGTGCCAGTGAAGCGATGGCGGCAACGCCGAAAGCAGTGAAAACAACCTATGACCTCGCC 22444 Query 11995 GACGGGAAATATACAGCGCAGGACGCCACCACAACGCGTAAAGGGATTGT 12044 ||||||||| |||| ||||| || | ||| | || || || ||||| Sbjct 22445 AGCGGGAAATACTCAGCACAGGATGCGAGCACTAGGCAAAAGGGCATTGT 22494 Score = 116 bits (128), Expect = 7e-22 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 21519 GGATTCAGAGCGACGGCATTTTGCAGATAGTCAGGCGCAAGGTGCGCATAGGCCATCGTC 21578 ||||| || || | ||||| |||||||||||| || || ||||| ||||||| ||| ||| Sbjct 174 GGATTGAGCGCTATGGCATCTTGCAGATAGTCTGGTGCGAGGTGTGCATAGGTCATGGTC 233 Query 21579 TGCTGAATGCTCGCATGTCCCAGAATCTGTTGCAGTGCGATTATATTGCCCCCATTCATC 21638 ||||||||| | || ||||||| |||| || || | | |||||||| ||||| ||| Sbjct 234 TGCTGAATGTTTGCGTGTCCCATTATCTTCTGTAGCGTCAAAATATTGCCTCCATTAATC 293 Query 21639 ATGAAATGGCTTGCGAATGTATGCCGCAGGATGTGGGTTGCCTG 21682 || || || || |||||||| || || | ||| | ||| || Sbjct 294 ATAAAGTGCGCCGCAAATGTATGACGTAGTACGTGTGCTGCTTG 337 Score = 87.8 bits (96), Expect = 3e-13 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 26336 GGGTATATCGCGAAATACATCTCAAAAAACATCGATGGCTATGCACTGGATGGTCAGCTC 26395 |||||| ||||||||||||| || ||||| || ||||||||||| || || ||| | | Sbjct 6868 GGGTATGTCGCGAAATACATTTCGAAAAATATTGATGGCTATGCCCTAGACGGTGAAACC 6927 Query 26396 GATAACGATACCGGCAGGCCGCTGAAAGATACTGCTGCGGC-TGTTACCGCATGGGCGTC 26454 || |||| | ||||| |||| | || ||| || || || || |||||| |||||||| Sbjct 6928 GACGACGAAAGCGGCAAGCCGTTAAAGGATCACGC-GCAGCGTGCTACCGCCTGGGCGTC 6986 Query 26455 AACGTGGCGCATTCCGCAATTT 26476 ||| |||||| || ||| Sbjct 6987 GCTCTGGGGCATTCGCCAGTTT 7008 >seq2657 Length=15264 Score = 105 bits (116), Expect = 1e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 21534 GCATTTTGCAGATAGTCAGGCGCAAGGTGCGCATAGGCCATCGTCTGCTGAATGCTCGCA 21593 |||| |||||| ||||| || |||||||| ||||| | ||| || || || ||||| || Sbjct 14972 GCATGTTGCAGGTAGTCCGGGGCAAGGTGAGCATACGTCATAGTTTGTTGTATGCTGGCG 15031 Query 21594 TGTCCCAGAATCTGTTGCAGTGCGATTATATTGCCCCCATTCATCATGAAATGGCTTGCG 21653 || || | ||||| || | || | || || || || ||||||| |||||||| ||| Sbjct 15032 TGCCCTAATATCTGCTGTAACGCCACTAAGTTTCCTCCGTTCATCACAAAATGGCTGGCG 15091 Query 21654 AATGTATGCCGCAGGATGTGGGTTGCCTGATTGGGTGGTATATCAGGTTTCAC 21706 |||||||| ||||| || || | | ||| |||||| |||||||| || Sbjct 15092 AATGTATGTCGCAGAATATGCGACGACTGGCCTTTTGGTATGTCAGGTTTAAC 15144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95048321112064