Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq141 122 1e-21 seq696 120 5e-21 seq26 111 2e-18 seq3180 95.1 2e-13 >seq141 Length=1333187 Score = 122 bits (134), Expect = 1e-21 Identities = 184/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||| |||||||||||| ||||| ||| |||||| ||| || ||| || | | Sbjct 705300 TGTACTTGGAGACGGCCTTGGTCCCCTCGCTGACCGCGTGCTTGGACAATTCTCCCGGTA 705241 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | |||||||||||| ||||| ||||| | | | ||| |||| ||||||| |||| Sbjct 705240 AAAGCAGGCGCACGGCTGTCTGAATCTCCCTCGAGGTGATGGTGTGTCGCTTGTTGTAGT 705181 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | || || || || ||||||| |||| | |||| |||||||| || || || Sbjct 705180 GGACG--AGACGAGAGGACTCGGTGGCGATCCTCTCGAAGATGTCGTTCACGAAGCTATT 705123 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| || ||| | || | ||| || || |||||| ||| ||||| Sbjct 705122 CATGATGCTCATCGCCTTCGAGGACACACCGATGTCCGGCTGGACCTGCCGGAGGACCTT 705063 Query 1485708 GTAAACAAAGGACGAGTACG 1485727 | | | ||| ||||||| Sbjct 705062 GAAGATGTAGGTGGAGTACG 705043 >seq696 Length=528002 Score = 120 bits (132), Expect = 5e-21 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||| ||||| || ||||| ||| |||| ||| | |||||||||||||||||||| Sbjct 106275 AGGTTGACCAGGGTACACTCTTCGAGCTGATTCTCTCAGCCAACTACCTCGACATCAAAG 106216 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 |||||||| | |||||||| || |||||| | |||||||||||| | || |||| Sbjct 106215 GTCTCCTCGACGTCACCTGCAAGACAGTCGCCAACATGATCAAGGGCAAGACCCCAGAGG 106156 Query 2035732 ACATCCGCAAGACCTTTAACATCAAG 2035757 | || |||||||| || ||||||||| Sbjct 106155 AAATTCGCAAGACATTCAACATCAAG 106130 >seq26 Length=2876367 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || || ||||| ||||| | |||| || || | | Sbjct 1291197 TGTACTTGGTAACAGCCTTGGTGCCTTCAGAGACAGCGTGTTTAGCCAACTCTCCTGGAA 1291256 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| || || || ||||| ||||| || | | ||| || || ||||| | Sbjct 1291257 GGAGCAGACGAACAGCTGTCTGAATCTCCCGAGAGGTGATGGTTGAACGTTTGTTGTAGT 1291316 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| | ||| |||| | | || | |||| ||||||||||| || ||||||| Sbjct 1291317 GAGCCAATCTCGAGGCTTCGGCGGCAATTCTTTCGAAGATGTCGTTGACGAATGAGTTCA 1291376 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||| || ||||||||| || ||||| | || |||| Sbjct 1291377 TGATGCTCATGGCTTTGCTGGAGACTCCAGTGTCGGGGTGAACTTGCTTCAAAACTTTGT 1291436 Query 1485710 A 1485710 | Sbjct 1291437 A 1291437 Score = 96.9 bits (106), Expect = 5e-14 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || || ||||| || || || || |||||| | |||| || ||| | | Sbjct 1966569 TGTATTTAGTCACAGCTTTGGTGCCTTCAGACACAGCGTGCTTTGCCAACTCTCCGGGGA 1966628 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||||||| || | ||| ||| |||||||| | Sbjct 1966629 GAAGAAGACGAACAGCAGTCTGGATCTCTCGAGATGTGATGGTGGAACGCTTGTTGTAGT 1966688 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || || || | | | || | |||| ||||||||||| || ||||||| Sbjct 1966689 GAGCCAATCGTGAAGCTTCAGCGGCAATTCTCTCGAAGATGTCGTTGACGAAGGAGTTCA 1966748 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||| || |||||| || || || || | ||||||| Sbjct 1966749 TGATGCTCATGGCTTTGCTGGAGACTCCAGTGTCGGGATGAACTTGTTTCAAGACCTTGT 1966808 Query 1485710 AAA 1485712 ||| Sbjct 1966809 AAA 1966811 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| |||||||| || || ||||| ||||| | |||| || ||| | | Sbjct 565213 TGTATTTAGTGACAGCCTTGGTGCCTTCAGAGACAGCGTGTTTTGCCAACTCTCCGGGGA 565272 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||||||| || | ||| ||| |||||||| | Sbjct 565273 GAAGGAGACGAACAGCAGTCTGGATCTCCCGAGATGTGATGGTGGAACGCTTGTTGTAGT 565332 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || || || | | | || | |||| ||||||||||| || ||||||| Sbjct 565333 GAGCCAATCGTGAAGCTTCAGCGGCAATTCTCTCGAAGATGTCGTTGACGAATGAGTTCA 565392 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||| | || ||| ||||| || || || | || |||| Sbjct 565393 TGATGCTCATGGCTTTGCTGGAAACTCCAGTGTCAGGGTGAACTTGTTTCAAGACTTTGT 565452 Query 1485710 A 1485710 | Sbjct 565453 A 565453 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || || ||||| || || || || |||||| | |||| ||| ||| | | Sbjct 1960278 TGTATTTAGTCACAGCTTTGGTGCCTTCAGACACAGCGTGCTTTGCCAATTCTCCGGGGA 1960337 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||||||| || | || ||| |||||||| | Sbjct 1960338 GAAGAAGACGAACAGCAGTCTGGATCTCTCGAGATGTTATGGTGGAACGCTTGTTGTAGT 1960397 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || || || | | | || | |||| ||||||||||| || ||||||| Sbjct 1960398 GAGCCAATCGTGAAGCTTCAGCGGCAATTCTTTCGAAGATGTCGTTGACGAAGGAGTTCA 1960457 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||| || |||||| || || || || | ||||||| Sbjct 1960458 TGATGCTCATGGCTTTGCTGGAGACTCCAGTGTCGGGATGAACTTGTTTCAAGACCTTGT 1960517 Query 1485710 A 1485710 | Sbjct 1960518 A 1960518 Score = 87.8 bits (96), Expect = 3e-11 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| |||||||| || || || || |||||| | |||| || ||| | | Sbjct 550509 TGTATTTAGTGACAGCCTTGGTGCCTTCAGACACAGCGTGCTTTGCCAACTCTCCGGGGA 550450 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||| ||||| || | ||| ||| |||||||| | Sbjct 550449 GAAGGAGACGAACAGCCGTCTGAATCTCCCGAGATGTGATGGTGGAACGCTTGTTGTAGT 550390 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || || || | | | || | |||| ||||||||||| || ||||||| Sbjct 550389 GAGCCAATCGTGAAGCTTCAGCGGCAATTCTCTCGAAGATGTCGTTGACGAATGAGTTCA 550330 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||| | || ||| ||||| || || || | || |||| Sbjct 550329 TGATGCTCATGGCTTTGCTGGAAACTCCAGTGTCAGGGTGAACTTGTTTCAAGACTTTGT 550270 Query 1485710 A 1485710 | Sbjct 550269 A 550269 Score = 87.8 bits (96), Expect = 3e-11 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || |||||||| || || ||||||||||| | ||||| || || | | Sbjct 1872500 TGTATTTAGTAACAGCCTTGGTGCCTTCAGAGACGGCGTGTTTAGCCAGCTCTCCTGGAA 1872441 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | | || || || ||||| ||||| || | ||| || |||||||| Sbjct 1872440 GTAGTAAACGAACAGCAGTCTGAATCTCCCGAGAAGTGATGGTAGAACGCTTGTTGTAAT 1872381 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || || || | | | || | |||| ||||||||||| || ||||||| Sbjct 1872380 GAGCCAATCGTGAAGCTTCAGCGGCAATTCTTTCGAAAATGTCGTTGACGAATGAGTTCA 1872321 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || ||| ||||| |||||||| | ||||||| Sbjct 1872320 TGATGCTCATGGCCTTGCTGGAGACCCCAGTGTCCGGGTGAACCTGCTTCAAGACCTTGT 1872261 Query 1485710 A 1485710 | Sbjct 1872260 A 1872260 >seq3180 Length=22072 Score = 95.1 bits (104), Expect = 2e-13 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 2175076 TGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGT 2175135 ||||||||||||| ||||| || || ||||| | | || || || ||||||||||||| Sbjct 20472 TGCCGTCGGTGCCATTTTTGAAACCCACCGGGCAGGAGAGGGCGGAGGCCATTTCGCGGT 20531 Query 2175136 GCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCA 2175175 | | |||||| || ||||| |||||||| | ||||||||| Sbjct 20532 GAATCTGGCTTTCCGTGGTTCGCGCGCCAATGGCGCCCCA 20571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915824305741952