Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq3842 210 5e-50 seq2852 203 7e-48 seq2657 104 5e-18 >seq3842 Length=22882 Score = 210 bits (232), Expect = 5e-50 Identities = 208/269 (77%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 12462 TATGACCTTGCTAACGGGAAATATACCGCACAGGACGCCACCACCGCGCGAAAAGGCCTT 12521 |||||||| || | ||||||||| | |||||||| || | ||| || ||| ||| || Sbjct 22513 TATGACCTCGCCAGCGGGAAATACTCAGCACAGGATGCGAGCACTAGGCAAAAGGGCATT 22572 Query 12522 GTCCAGCTAAGTAGCGTCACCAACAGCGATTCTGAAACGCTTGCGGCAACGCCAAAGGCG 12581 ||| ||| ||||||| ||||||||| || ||||||| | ||||| |||||||| || Sbjct 22573 GTCAGGCTGAGTAGCGCGACCAACAGCAATGATGAAACGATGGCGGCGACGCCAAAAGCA 22632 Query 12582 GTTAAGACAGCGTATGACCTTGCTAACGGGAAATACACTGCACAGGATGCCACCACAGCG 12641 || || |||| |||||||| || | |||||||||| | ||||||||||| | ||| | Sbjct 22633 GTGAAAGCAGCCTATGACCTCGCCAGCGGGAAATACTCAGCACAGGATGCGAGCACCAGG 22692 Query 12642 CGAAAAGGTCTTGTCCAGCTCAGTAGCGCCACCAACAGCGATTCTGAAACGCTTGCGGCA 12701 | ||| || ||||| | | |||||||| ||||||||| || ||||||| | || || Sbjct 22693 CAAAAGGGCATTGTCAGGTTGAGTAGCGCGACCAACAGCAATGATGAAACGATGGCTGCC 22752 Query 12702 ACACCAAAAGCGGTGAAGTCTGCCTATGA 12730 ||||| |||||||||||| | |||||||| Sbjct 22753 ACACCCAAAGCGGTGAAGGCAGCCTATGA 22781 Score = 140 bits (154), Expect = 7e-29 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 12399 AGCAGTGCGACCAACAGCACGTCTGAAACACTGGCCGCAACGCCGAAAGCGGTAAAGGCC 12458 || || ||||||||||||| |||||| |||| || ||||| ||||| || || || Sbjct 22582 AGTAGCGCGACCAACAGCAATGATGAAACGATGGCGGCGACGCCAAAAGCAGTGAAAGCA 22641 Query 12459 GCGTATGACCTTGCTAACGGGAAATATACCGCACAGGACGCCACCACCGCGCGAAAAGGC 12518 || |||||||| || | ||||||||| | |||||||| || | |||| || ||| ||| Sbjct 22642 GCCTATGACCTCGCCAGCGGGAAATACTCAGCACAGGATGCGAGCACCAGGCAAAAGGGC 22701 Query 12519 CTTGTCCAGCTAAGTAGCGTCACCAACAGCGATTCTGAAACGCTTGCGGCAACGCCAAAG 12578 ||||| | | ||||||| ||||||||| || ||||||| | || || || || || Sbjct 22702 ATTGTCAGGTTGAGTAGCGCGACCAACAGCAATGATGAAACGATGGCTGCCACACCCAAA 22761 Query 12579 GCGGTTAAGACAGCGTATGA 12598 ||||| ||| |||| ||||| Sbjct 22762 GCGGTGAAGGCAGCCTATGA 22781 Score = 131 bits (144), Expect = 4e-26 Identities = 421/662 (64%), Gaps = 64/662 (10%) Strand=Plus/Plus Query 12076 ATTATATTATCGCAGAGCTGGTTATTCCGCCGGAGGTG--GGCGGTTTCTGGATGCGTGA 12133 || ||||||| || | || ||| || || || | || || || |||||||| ||||| Sbjct 22047 ATCATATTATTGCCGTGCAGGTGATCCC--CGAAAATGAAGGGGGATTCTGGATACGTGA 22104 Query 12134 GCTTGGCCTGTACGATGATGCGGGAACATTAATTGCCGTGGCGAACATGGCCGAAAGTTA 12193 | ||||||| |||| || || | || ||||| || || ||| ||||||| || Sbjct 22105 AATCGGCCTGTTTGATGCTGAAGGTAATTTGATTGCGGTTGCCAACTGCGCCGAAACCTA 22164 Query 12194 TAAGCCAGCTCTTGCCG-AAGGCTCAGGGCGTTCGCAGACCTGTCGCATGGTCATCATCG 12252 |||||| || |||| | ||||| || ||| |||||| |||||| | | || | Sbjct 22165 TAAGCC-GCAATTGCAGGAAGGCAGCGGACGTATTCAGACCGTGCGCATGATTTTGATTG 22223 Query 12253 TCAGCAGTGTGGCCTCAGTGGAGCTGACCATTGACACCACAACAGTGATGGCGACGCAGG 12312 || ||| | |||| ||| | ||||| | | ||| |||| |||| | Sbjct 22224 TCTCCAGCACAGAAACAGTATCGCTTAAAATTGATCCGGCGGTGGTGCTGGCAACGCGTG 22283 Query 12313 ATTACGTTGATGACAAAATTGCAGAGCACGAACAGTCACGACGT---CACCCGGACGCCT 12369 || || ||||| || || ||| ||| | | | ||| || || ||||| Sbjct 22284 GCTATGTGGATGATGCTATCGCTACGCATGAAAA---AAGCCGTAAACATCCAGACGCAA 22340 Query 12370 CGCTGACCGCCAAAGGTTTTACTCAGTTAAGCAGTGCGACCAACAGCACGTCTGAAACAC 12429 |||| || ||||| ||| || || |||| ||| || |||| | |||| | Sbjct 22341 CGCTTGAGGCAAAAGGCTTTGTGCAATTGAGCAATGCCACGGACAGTGCCAGTGAAGCGA 22400 Query 12430 TGGCCGCAACGCCGAAAGCGGTAAAGGCCGCGTATGACCTTGCTAACGGGAAATATACCG 12489 |||| |||||||||||||| || || | | |||||||| || | ||||||||| | | Sbjct 22401 TGGCGGCAACGCCGAAAGCAGTGAAAACAACCTATGACCTCGCCAGCGGGAAATACTCAG 22460 Query 12490 CACAGGACGCCACCACCGCGCGAAAAGGCCTTGTCCAGCTAAGTAGCGTCACCAACAGCG 12549 ||||||| || | ||| || ||| ||| ||||| ||| ||||||| Sbjct 22461 CACAGGATGCGAGCACTAGGCAAAAGGGCATTGTCAGGCTGAGTAGCG------------ 22508 Query 12550 ATTCTGAAACGCTTGCGGCAACGCCAAAGGCGGTTAAGACAGCGTATGACCTTGCTAACG 12609 | || |||||||| || | || Sbjct 22509 ---------------------CNCC-------------------TATGACCTCGCCAGCG 22528 Query 12610 GGAAATACACTGCACAGGATGCCACCACAGCGCGAAAAGGTCTTGTCCAGCTCAGTAGCG 12669 |||||||| | ||||||||||| | ||| || ||| || ||||| ||| ||||||| Sbjct 22529 GGAAATACTCAGCACAGGATGCGAGCACTAGGCAAAAGGGCATTGTCAGGCTGAGTAGCG 22588 Query 12670 CCACCAACAGCGATTCTGAAACGCTTGCGGCAACACCAAAAGCGGTGAAGTCTGCCTATG 12729 | ||||||||| || ||||||| | ||||| || |||||||| ||||| | ||||||| Sbjct 22589 CGACCAACAGCAATGATGAAACGATGGCGGCGACGCCAAAAGCAGTGAAAGCAGCCTATG 22648 Query 12730 AC 12731 || Sbjct 22649 AC 22650 Score = 116 bits (128), Expect = 8e-22 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22878 GGATTCAGCGCGACGGCATTTTGCAGGTAGTCAGGCGCAAGGTGCGCATAGGCCATCGTC 22937 ||||| ||||| | ||||| |||||| ||||| || || ||||| ||||||| ||| ||| Sbjct 174 GGATTGAGCGCTATGGCATCTTGCAGATAGTCTGGTGCGAGGTGTGCATAGGTCATGGTC 233 Query 22938 TGCTGAATGCTCGCATGTCCCAGAATCTGTTGCAGTGCGATTATATTGCCCCCATTCATC 22997 ||||||||| | || ||||||| |||| || || | | |||||||| ||||| ||| Sbjct 234 TGCTGAATGTTTGCGTGTCCCATTATCTTCTGTAGCGTCAAAATATTGCCTCCATTAATC 293 Query 22998 ATGAAATGGCTTGCGAATGTATGCCGCAGGATGTGGGTTGCCTG 23041 || || || || |||||||| || || | ||| | ||| || Sbjct 294 ATAAAGTGCGCCGCAAATGTATGACGTAGTACGTGTGCTGCTTG 337 Score = 98.7 bits (108), Expect = 2e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 9876 AACCCGCGTCACCCTGGACACACCGGAGGTGGTCTGCACCAACAGGCTGATTACCGGCAC 9935 ||||| ||| ||| || || ||||| ||| | || ||||||| ||||| || ||||| Sbjct 19789 AACCCATATCATCCTAGATACGCCGGAAGTGATTTGTACCAACAAGCTGACGACAGGCAC 19848 Query 9936 GCTGGAAGTGCAGAAGGGCGGGACGATGCGCGGCAACATTGAACACACCGGCGGTGAACT 9995 |||||||||||| || ||||| |||| ||||||||||| ||||| |||||| | | Sbjct 19849 GCTGGAAGTGCAAAAAGGCGGAGAAATGCACGGCAACATTGCACACAGCGGCGGCGCGTT 19908 Query 9996 CTCATCAAACGG 10007 | | || ||||| Sbjct 19909 CACCTCCAACGG 19920 Score = 93.3 bits (102), Expect = 9e-15 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 12512 AAAAGGCCTTGTCCAGCTAAGTAGCGTCACCAACAGCGATTCTGAAACGCTTGCGGCAAC 12571 ||||||| |||| || | || | | ||| |||| | |||| || | |||||||| Sbjct 22351 AAAAGGCTTTGTGCAATTGAGCAATGCCACGGACAGTGCCAGTGAAGCGATGGCGGCAAC 22410 Query 12572 GCCAAAGGCGGTTAAGACAGCGTATGACCTTGCTAACGGGAAATACACTGCACAGGATGC 12631 ||| || || || || ||| | |||||||| || | |||||||||| | ||||||||||| Sbjct 22411 GCCGAAAGCAGTGAAAACAACCTATGACCTCGCCAGCGGGAAATACTCAGCACAGGATGC 22470 Query 12632 CACCACAGCGCGAAAAGGTCTTGTCCAGCTCAGTAGCGC 12670 | ||| || ||| || ||||| ||| |||||||| Sbjct 22471 GAGCACTAGGCAAAAGGGCATTGTCAGGCTGAGTAGCGC 22509 Score = 82.4 bits (90), Expect = 2e-11 Identities = 223/340 (66%), Gaps = 1/340 (0%) Strand=Plus/Plus Query 11424 TGTGGAACCCGGATACCTGTCCGGCAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCGG 11483 ||||| | |||| | || ||| | | |||||||| | ||||| |||||||| || | Sbjct 21331 TGTGGGATGCGGAGAAATGCCCGCTAGACCTGCTGCCTTTTCTGGCCTGGGCGTTGTCCG 21390 Query 11484 TCGACAGGTGGGATGAAAAGTGGCCGGAAGCGACAAAACGCGCCGTTATCCGCGATGCCT 11543 | ||| | |||||| || ||| | ||| || || || || || |||| Sbjct 21391 TTGACCGCTGGGATAAACGCTGGTCAGAACAAACCAAGCGTCAGGTGATTAAATCAGCCT 21450 Query 11544 ATTTCATCCACTGTCATAAAGGCACTATCGGCGCAATCCGGCGTGTGGTGGAGCCGCTCG 11603 || || ||| | || |||||||| || | ||| | || || ||||| ||||| | | Sbjct 21451 GGTTGATACACCGCCAGAAAGGCACCATTGCCGCGCTGCGCCGGGTGGTTGAGCCATTTG 21510 Query 11604 GCTATCTCATCAACGTGACGGAGTGGTGGGAAAACAGTGACCCGCCCGGCACCTTCCGGC 11663 | || | | ||||| || |||||| ||| | | | ||| || ||||| | | Sbjct 21511 GTTACTTGCTGCGCGTGATCGAATGGTGGCAAACCGGCGGTGTGCCGGGAACCTTTCACC 21570 Query 11664 TCGATATTGGTGTACTGGAAAGTGGCATCACAGAGGCAATGTATCAGGAAATGGAACGGC 11723 | ||||| || || | ||| | || || || || | || | | || || || |||| Sbjct 21571 TGGATATCGGCGTGCAGGACAACGGTATTACTGAAGAAACCTTTTTAGAGATTGAGCGGC 21630 Query 11724 TGATTGCTGATGCCAAACCTGCAAGCCGCCACCTTATTGG 11763 |||||||||| ||||| || ||||| || ||| |||| Sbjct 21631 TGATTGCTGACGCCAAGCCGCTTAGCCGTCA-CTTGTTGG 21669 >seq2852 Length=1514 Score = 203 bits (224), Expect = 7e-48 Identities = 354/503 (70%), Gaps = 19/503 (4%) Strand=Plus/Plus Query 23708 TGTGTATCGCTCAAATGCTACAGCCTCAGCTTTTCTTTCAAATTTCCTGCGGATGCGTTT 23767 |||||| |||||||| ||||| || || | | || | |||||| || || ||||| || Sbjct 625 TGTGTAGCGCTCAAAGGCTACCGCTTCCGTTCTTTTCTCAAATCGCCGCCGAATGCGCTT 684 Query 23768 TCCGTCGCGACCGCGAGGTCTAATGTCCACTTCATAGCGTCCATCATCGAGCTTCTTAAT 23827 ||| ||| ||| || | ||||||||||| || | || |||| ||||||||||| Sbjct 685 CCCGCTGCGTCCGATCGGGCGTATGTCCACTTCGTATTGACCCCCATCAAGCTTCTTAAT 744 Query 23828 TGACATAAGAAAGCCCTCTGACGCTGTATTCACCATCTTGGTAACAAATGGTGAAAATAT 23887 ||||||||||||||||| || | | | ||| | ||| || ||| |||| | Sbjct 745 CGACATAAGAAAGCCCTCCGAGGAAGCAATCA---TTTTGAAAATCAATATAAAAAAGGT 801 Query 23888 AATGTTTA-TATAGTGTTAACCAGTCTGTTTTTCGGAGTGGTCTGATTCTGTTGGTTTTT 23946 || || | || | ||| ||| | | | ||||| |||| ||| |||| || | Sbjct 802 AA-GTAAAGTAAACACTTAGCCAATTTTGTGATCGGATTGGTGAGATATTGTTTCTTCTA 860 Query 23947 GCCCAATGTGTGCGAGAGCCGGCGCGATCTGACCAGCTTGTGGTGACGTATCACCAGTCA 24006 |||||||||||||||| ||||| || | ||||||||||| |||| || | | | |||| Sbjct 861 GCCCAATGTGTGCGAGGGCCGGTGCTACCTGACCAGCTTCCGGTGCTGTCTTATCTGTCA 920 Query 24007 TTAACCAGAGCGTATATTTTTTAAATAAAGGC--GTAT-TTGTGACTCGCATAA-CGATG 24062 ||| ||| | |||||||||| |||| || | || | || | |||||| ||| Sbjct 921 TTAGCCATAAGGTATATTTTTCAAAT---TGCTTGCATCTAGTTAGAAGCATAACCGA-- 975 Query 24063 CTG-AGACCAGGGTCTTTATGCCCACTTTCGTAATTTTTGACTGTTCCTAGAGCTATCCC 24121 ||| || ||||| ||| || || | ||||||||||| | || | || || ||||| Sbjct 976 CTGTAGGCCAGGTTCTGCGTGTCCTCCCTCGTAATTTTTTAACGTACTTAATGCCATCCC 1035 Query 24122 GCTAATTTCGCTGAATTTCGCCTGTGTTAAGCCTTCTGCTTTCCTAATCGCTTTCAGTTT 24181 ||| ||||| | |||||||| || ||||| || || || || ||||| ||||| | ||| Sbjct 1036 GCTGATTTCACAGAATTTCGATTGAGTTAAACCCTCAGCCTTTCTAATGGCTTTGATTTT 1095 Query 24182 T--TCGAATGTCTGCATTTGACA 24202 | || || || ||||||||| Sbjct 1096 TTGTCCCATATC--CATTTGACA 1116 >seq2657 Length=15264 Score = 104 bits (114), Expect = 5e-18 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22893 GCATTTTGCAGGTAGTCAGGCGCAAGGTGCGCATAGGCCATCGTCTGCTGAATGCTCGCA 22952 |||| |||||||||||| || |||||||| ||||| | ||| || || || ||||| || Sbjct 14972 GCATGTTGCAGGTAGTCCGGGGCAAGGTGAGCATACGTCATAGTTTGTTGTATGCTGGCG 15031 Query 22953 TGTCCCAGAATCTGTTGCAGTGCGATTATATTGCCCCCATTCATCATGAAATGGCTTGCG 23012 || || | ||||| || | || | || || || || ||||||| |||||||| ||| Sbjct 15032 TGCCCTAATATCTGCTGTAACGCCACTAAGTTTCCTCCGTTCATCACAAAATGGCTGGCG 15091 Query 23013 AATGTATGCCGCAGGATGTG 23032 |||||||| ||||| || || Sbjct 15092 AATGTATGTCGCAGAATATG 15111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107482935165440