Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_023555.1 Length=43017 Score E Sequences producing significant alignments: (Bits) Value seq3098 122 2e-23 seq2972 102 2e-17 seq2728 91.5 4e-14 >seq3098 Length=1355 Score = 122 bits (134), Expect = 2e-23 Identities = 343/515 (67%), Gaps = 19/515 (4%) Strand=Plus/Minus Query 6027 ATTCAGGCCATCACGGAGGTTATCGACGCACGTTTTCGATACCCGCATACCGCCTTGTTG 6086 ||| | ||||||||||| | || || || || || |||||| | |||||| || || Sbjct 526 ATTGATGCCATCACGGAAATCATTGATGCGAAATTGCGTTACCCGGAAACCGCCCTGCTG 467 Query 6087 TTTATCGAGTTCAACGCAAAATCATTCCAGAATATCCCGAAAATATCGTGCCTGGCCAAA 6146 ||| || |||| | || || ||||||||||||||| || || || | | | Sbjct 466 TTTGTCCAGTTTGATGCGAAGCAGTTCCAGAATATCCCGGTTATTTCCTGTGAGCCGGAT 407 Query 6147 GGGCGTATTATCCGAGTACCAAGTAACTATGACCCAGACACCCGCACCTATTCCGGCAAT 6206 ||||| |||||||| || || || ||||| || | |||| ||||| ||| Sbjct 406 GGGCGCATTATCCGCGTTCCCTCAAATTATGATCCGGTAGCCCGTACCTACGGCGGGGCA 347 Query 6207 TGGGATGGGTCGTTTAAATGGGCCTACACCAACAATCCGGCGTGGGTATGGTACGACGTA 6266 ||||| || | ||||||||||| | | ||||||| ||||| ||| | | |||||| | Sbjct 346 TGGGACGGCACCTTTAAATGGGCGTTCTCCAACAACCCGGCCTGGATTTACTACGACATC 287 Query 6267 TTGACTCAAC-CGCGGTTCGGGCTTGGTAAGCGCGTTACGGCGGCCA--TGCTAGAT--- 6320 || ||| | || || || ||||| || ||| | | ||| | | || | | Sbjct 286 CAGA-TCAGCGATCGCTTTGGTCTTGGCAACCGCATCAAGGCTGAAAATCTCTCGGTTTC 228 Query 6321 -AAATGGGAGTTGTACCGCATCGCACAGCGCTGCGATCAGATGGTGCCGGATG---GTGC 6376 || ||| | |||||| ||||| ||| ||||| ||| | || || |||| ||| Sbjct 227 GAAGTGGACGCTGTACCAGATCGCGCAGTATTGCGACCAGTTAGTACCTGATGGCCGTGG 168 Query 6377 CGGT---GGTGTTGAGCCGCGTTTCGAGTTCAACTGT-TATTTGCAGGCGCAGGCCGATG 6432 |||| || ||||| ||||| || | | ||| ||| | ||| |||||| || | Sbjct 167 CGGTGACGGCACCGAGCCACGTTTTTTGTGCGA-TGTGTATATCCAGTCGCAGGAAGAAG 109 Query 6433 CCTGGACGGTGATCCGTGATATCGCGGCGGGATTTAACGG-GCTGACGTATTGGGGAAAC 6491 ||||||| ||| | ||| | || || ||| ||| ||| |||| ||||| ||| Sbjct 108 CCTGGACCGTGCTTAACGATCTGGCCGCCATTTTTCGCGGCGCT-ACGTTCTGGGGCAAC 50 Query 6492 AACATGTTCAATGTGGTTTCCGATATGCCG-GTGA 6525 ||| | | |||||| | |||| |||||| |||| Sbjct 49 AACCAGATGAATGTGATCGCCGACATGCCGCGTGA 15 >seq2972 Length=2207 Score = 102 bits (112), Expect = 2e-17 Identities = 342/517 (66%), Gaps = 23/517 (4%) Strand=Plus/Plus Query 6027 ATTCAGGCCATCACGGAGGTTATCGACGCACGTTTTCGATACCCGCATACCGCCTTGTTG 6086 ||| | ||||| ||||| | || || || || || || ||| | ||||| |||||| Sbjct 1682 ATTGATGCCATAACGGAAATCATTGATGCGAAATTACGTTATCCGGAAACCGCATTGTTG 1741 Query 6087 TTTATCGAGTTCAACGCAAAATCATTCCAGAATATCCCGAAAATATCGTGCCTG-GCCA- 6144 ||| | |||| | || || || |||||||||||| || || || || |||| Sbjct 1742 TTTGTTCAGTTTGATGCGAAGCAGTTTCAGAATATCCCGGTGATTTCCTG--TGAGCCAG 1799 Query 6145 AAGGGCGTATTATCCGAGTACCAAGTAACTATGACCCAGACACCCGCACCTATTCCGGCA 6204 | ||||| |||||||| || || || ||||| || | |||| || || ||| Sbjct 1800 ACGGGCGCATTATCCGTGTTCCCTCAAATTATGATCCGGTAGCCCGTACTTACAGCGGGG 1859 Query 6205 ATTGGGATGGGTCGTTTAAATGGGCCTACACCAACAATCCGGCGTGGGTATGGTACGACG 6264 ||| | || | ||||||||||| | |||||| |||||||| ||||| | |||||| Sbjct 1860 CATGGAACGGCACCTTTAAATGGGCATTCACCAATAATCCGGCCTGGGTGTATTACGACA 1919 Query 6265 TATTGACTCAAC-CGCGGTTCGGGCTTGGTAAGCGCGTTACGGCGG----CCATGC--TA 6317 | || ||| | || || || ||||| || ||| | | || | || | | | Sbjct 1920 TCCAGA-TCAGCGATCGCTTTGGCCTTGGCAACCGCATCAAAGCTGAAAACCTTTCCGTC 1978 Query 6318 GATAAATGGGAGTTGTACCGCATCGCACAGCGCTGCGATCAGATGGTGCCGGATG---GT 6374 || ||| | |||||| ||||| ||| ||||| ||| |||| || |||| || Sbjct 1979 TCGAAGTGGACGCTGTACCAGATCGCGCAGTATTGCGACCAGTTGGTTCCTGATGGACGT 2038 Query 6375 GCCGG---TGGTGTTGAGCCGCGTTTCGAGTTCAACTGT-TATTTGCAGGCGCAGGCCGA 6430 | ||| ||| ||| || ||||| | | | ||| ||| | ||| |||||| || Sbjct 2039 GGCGGTAATGGCACTGAACCACGTTTTTTATGCGA-TGTGTATATCCAGTCGCAGGAAGA 2097 Query 6431 TGCCTGGACGGTGATCCGTGATATCGCGGCGGGATTTAACGG-GCTGACGTATTGGGGAA 6489 |||||||| ||| | ||| | || || ||| ||| ||| |||| ||||| | Sbjct 2098 AGCCTGGACCGTGCTTAACGATCTGGCCGCCATTTTTCGCGGTGCT-ACGTTCTGGGGCA 2156 Query 6490 ACAACATGTTCAATGTGGTTTCCGATATGCCG-GTGA 6525 | ||| | | |||||| | |||| |||||| |||| Sbjct 2157 ATAACCAGATGAATGTGATCGCCGACATGCCGCGTGA 2193 >seq2728 Length=1005 Score = 91.5 bits (100), Expect = 4e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 16260 CCAAGGCGCTCGCCCGCATCGAGAAACCACATCTGCCCCCACACGTCCTTTAAGCCGTTC 16319 || || |||| ||| ||||| |||||| ||| ||||||| ||| | | ||||||| Sbjct 172 CCGAGACGCTGGCCATGATCGACAAACCATGACTGGCCCCACAGGTCGATCAGGCCGTTC 113 Query 16320 GGCGCTGGCGTACCGGTCAGATTGATAAACCTGCGGATTTTCTTATGCGCCACTTTCGCC 16379 ||||| ||||||||||| ||||| || | | | | | | ||||||||| ||||||||| Sbjct 112 GGCGCAGGCGTACCGGTGAGATTCATCCAGCGGTGTACGTGCTTATGCGCGACTTTCGCC 53 Query 16380 AATGC 16384 | ||| Sbjct 52 AGTGC 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137526319454464