Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq2351 168 7e-37 seq3532 125 8e-24 seq3176 109 6e-19 seq3516 89.7 6e-13 >seq2351 Length=10305 Score = 168 bits (186), Expect = 7e-37 Identities = 315/460 (68%), Gaps = 2/460 (0%) Strand=Plus/Minus Query 145894 GAACAGAGTGATGTAATCGTCTTTAATCAGACGTTCAAACATCAGGTCGTTGATTTGAAC 145953 |||||| ||||| | | |||| | ||| || | | ||||||| | ||| | || || Sbjct 3035 GAACAGGGTGATTTCTTGTCCTTTGACCAGGCGCTGATACATCAGCTTGTTCAACTGCAC 2976 Query 145954 ACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTGAGTACGAG 146013 |||||||| | |||||| | ||||| | || ||||| ||||||||| || || || Sbjct 2975 GCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTCTTCAGCACCAG 2916 Query 146014 GAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCGCCACCGCGAAC 146073 ||| |||| ||||||| ||||| | || || |||| || ||||| || ||||| || Sbjct 2915 CAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCTCCGCCGCGCAC 2856 Query 146074 TCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAATAACTCC 146133 || || || ||||| || || ||||| || |||| ||||| ||||||||||| || Sbjct 2855 ACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTTATAGAAAGGAATACAGCC 2796 Query 146134 AGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCATACCTGCGTT 146193 |||||| |||| || || || ||| |||||||| ||| ||||| Sbjct 2795 AGTATGGAATGCTTCACCACCGCGAATCGGGCTACCCAGCGCACGAATACGACCGGCGTT 2736 Query 146194 AATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCAGAT-TTGTTAA 146252 |||||||||||| ||||| | || | ||| | || || | | | || | ||||| Sbjct 2735 AATGCCGATACCGGCACGCTGTGAAACGTATTTCACGATAG-CACTGGAGGTGGCGTTAA 2677 Query 146253 TTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACGAGTAGGAG 146312 | || | ||| || || ||||| | ||||| || ||||| ||||| || || | Sbjct 2676 TGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACTGACGGGTTGGGG 2617 Query 146313 TACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTT 146352 |||| | || | ||| || || || |||| ||||| || Sbjct 2616 TACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCTT 2577 >seq3532 Length=11862 Score = 125 bits (138), Expect = 8e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 61347 TTAAGTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACG 61406 || ||||||||| || | ||| ||||| || || || ||||| || | | || ||||| Sbjct 11159 TTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACG 11218 Query 61407 AACGGCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGC 61466 || ||||| ||||||||||| || |||| ||| || |||||||| || |||| || || Sbjct 11219 CACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGC 11278 Query 61467 ATCTTCTAAAGTTTCTTTAGACAGCACGTTCACGTTCAAATGCTGTCCACCTTCAACTTT 61526 |||||| | ||||| ||| ||||||||||||| || || || ||||| || Sbjct 11279 ATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTCCACGCG 11338 Query 61527 AACTGTAGGCTTGGTTTCAATTCCAATTTCACGAGATTCAAA 61568 ||| || ||| |||| | || ||||||| ||||||| Sbjct 11339 CACTTCCGGTTTGATTTCCAACGGAACTTCACGATATTCAAA 11380 >seq3176 Length=18404 Score = 109 bits (120), Expect = 6e-19 Identities = 140/190 (74%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 61333 GACATTACATTTCCTTAAGTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTT 61392 || |||||||| || | |||||||| || | ||||||||| |||| || ||| || Sbjct 6311 GAAATTACATTGACTGA-GTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTC 6369 Query 61393 AGAGCATTAAAACGAACGGCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCT 61452 || | || || || |||||||| ||||||||||| || |||| ||| ||||||||||| Sbjct 6370 AGCGAGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCC 6429 Query 61453 GGATGTTGAACTGCATCTTCTAAAG--TTTCTTTAGACAGCACGTTCACGTTCAAATGCT 61510 || |||| | ||||| | | || |||| || |||||||||||||| || | Sbjct 6430 GGGTGTTCCATGGCATC--CAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTT 6487 Query 61511 GTCCACCTTC 61520 | |||||||| Sbjct 6488 GACCACCTTC 6497 >seq3516 Length=17139 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 76453 TTTGGCTGGGGTACCTGGACTCGAACCAGGGAATCGTAGAATCAAAATCTACTGCCTTAC 76512 |||||||||||||| ||| ||||||| ||||| || |||||| |||| |||||||||| Sbjct 8024 TTTGGCTGGGGTACGAGGATTCGAACCTCGGAATGGTGGAATCAGAATCCACTGCCTTAC 7965 Query 76513 CAACTTGGCTATACCCCAATTATTTGGAGGCGGGTGATGGACTCGAACC 76561 | |||||| ||||||||| || ||| ||| | ||| ||||||| Sbjct 7964 C-GCTTGGCGATACCCCAAAAATGTGGTGGCTACGGCGGGAATCGAACC 7917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554327703982080